mRNA_F-serratus_M_contig764.18905.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig764.18905.1
Unique NamemRNA_F-serratus_M_contig764.18905.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A5Q4ET32_9BACT (NADAR family protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A5Q4ET32_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.100e-41
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1
Query:   10 SQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGR-------ELWKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREILR 414
            SQW   PF +D + YNC EQFMM+ KAR+FGD  AL+ I+A+ +PR+QK  GR       +LW + C+ +V +G LAKF Q +E+R  LL TGDR +AE SP D++WGIGL A  P A  P+ W G N LG AL   R+ L+
Sbjct:   19 SQWHPSPFVLDAISYNCCEQFMMSEKARMFGDLDALNRIMATRNPRKQKAFGRSVKPFDADLWAAECQQVVFRGNLAKFEQNDELRELLLATGDRLIAEASPEDEVWGIGLPAEHPDALIPEKWRGTNWLGIALMRVRDHLK 160          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A1I0JJ35_9BACL (NADAR domain-containing protein n=1 Tax=Paenibacillus sp. NFR01 TaxID=1566279 RepID=A0A1I0JJ35_9BACL)

HSP 1 Score: 145 bits (365), Expect = 2.430e-41
Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    1 SAFSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGR-------ELWKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREIL 411
            S FSQW    FT++  EY+CAEQFMMA KARLFGD+T L AIL ++DP+  K  GR       E+W S C  IV +G++AKFSQ   +   L  TG+R L E SP D++WGIG+   +P A +P  W G NLLG AL  AR+IL
Sbjct:   37 SCFSQWWPSRFTVEGTEYSCAEQFMMAEKARLFGDETMLEAILKTHDPKAMKAFGRAVSRFDKEVWDSQCYDIVKRGSVAKFSQNPALGEYLRSTGNRILVEASPRDRIWGIGMGESNPDAENPMKWRGKNLLGFALTEARDIL 180          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: UPI001CCB45E4 (NADAR family protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB45E4)

HSP 1 Score: 144 bits (363), Expect = 3.630e-41
Identity = 73/143 (51.05%), Postives = 90/143 (62.94%), Query Frame = 1
Query:    7 FSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGREL-------WKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREILR 414
            F QWT   F +D V Y CAEQFMMA KARLFGD+   + ILA++ PR+ K LGRE+       W+  C  IV++G  AKF Q  ++R ALL TGD+ L E SP D++WG+GL A DPR      W G NLLG+AL   R  LR
Sbjct:   27 FGQWTSSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILATDSPRQHKALGREVAGFVQAVWERECLEIVVRGNRAKFGQDPDLRAALLATGDKLLVEASPLDRIWGVGLRADDPRIHDTSRWRGKNLLGEALMRVRAELR 169          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A5S5BRJ3_9BACL (NADAR domain-containing protein n=1 Tax=Paenibacillus methanolicus TaxID=582686 RepID=A0A5S5BRJ3_9BACL)

HSP 1 Score: 144 bits (363), Expect = 4.590e-41
Identity = 75/146 (51.37%), Postives = 93/146 (63.70%), Query Frame = 1
Query:    1 SAFSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGR-------ELWKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAR-EILR 414
            S FSQW   PFT+ + EY+CAEQFMMA KARLFGDD  L AIL S  P+E K  GR       ++W   C  IVL+G+LAKF+Q   +   L  TG+R L E SP D++WGIG+   +P  ++P  W G NLLG AL  AR E+LR
Sbjct:   37 SCFSQWWMSPFTVGVTEYSCAEQFMMAEKARLFGDDDMLEAILKSKHPKEMKAYGRAVRNFDKDVWDRECYGIVLRGSLAKFAQNPALGVYLKSTGNRILVEASPQDRIWGIGMGQSNPDVNNPLKWQGSNLLGFALTEARDELLR 182          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: UPI00048F1B33 (NADAR family protein n=1 Tax=Paenibacillus sp. UNC451MF TaxID=1449063 RepID=UPI00048F1B33)

HSP 1 Score: 143 bits (360), Expect = 1.430e-40
Identity = 76/144 (52.78%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 SAFSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGR-------ELWKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREIL 411
            S FSQW   PF  D  EY CAEQ+MMA KARLF DD  LSAIL +  P+E K LGR       E+W+S C  IV +GTLAKFSQ  E+   L  T +R L E SP D++WGIG+   DP A +P  W G NLLG AL   R+ L
Sbjct:   37 SCFSQWWMSPFVADGTEYTCAEQYMMAEKARLFKDDDMLSAILKAKHPKEMKALGRAVRNFDNEVWESQCYGIVKRGTLAKFSQNPELGDYLRSTKNRILVEASPLDRIWGIGMGKADPDAENPMKWRGKNLLGFALTEVRDEL 180          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A1I2I2Z7_9DELT (NADAR domain-containing protein n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2I2Z7_9DELT)

HSP 1 Score: 142 bits (359), Expect = 1.600e-40
Identity = 73/144 (50.69%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 SAFSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGREL-------WKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREIL 411
            + F QWT   F +D V Y CAEQFMMA KARLFGD+   + ILA++ PR  K LGR++       W   C  IV++G  AKF+Q  +MR ALL TG + L E SP D+LWG+GL A DPR   P+ W G NLLG+AL   R  L
Sbjct:   25 AVFGQWTPSRFVVDGVTYGCAEQFMMAEKARLFGDEATRAKILAADSPRTHKALGRQVAGFSQDVWDRECLGIVVRGNRAKFAQNPDMRAALLATGGKLLVEASPLDRLWGVGLRADDPRIHDPNQWRGKNLLGEALMRVRAEL 168          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A231QYY5_9BACL (NADAR domain-containing protein n=3 Tax=Cohnella TaxID=329857 RepID=A0A231QYY5_9BACL)

HSP 1 Score: 140 bits (354), Expect = 1.500e-39
Identity = 74/151 (49.01%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 SAFSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGR-------ELWKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAR-EILRQDFNT 429
            S  SQW   PF ID  EY+C EQ+MMA KARLFGD   L+AI+ +  P+E K  GR       ++W S C  IV +GTLAKFSQ  ++   L  T +R L E SP D++WGIG+   +P A +P  W G NLLG AL  AR E+LR++ NT
Sbjct:   37 SCLSQWWMTPFEIDGTEYSCTEQYMMAEKARLFGDGEMLNAIMQAKHPKEMKAFGRSVGNFDKDVWGSRCYEIVKRGTLAKFSQNPQLWDYLKSTKNRILVEASPRDRIWGIGMGKSNPNAENPLQWRGTNLLGFALTEARDELLRKEGNT 187          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: UPI0011EDB535 (NADAR family protein n=2 Tax=unclassified Actinomadura TaxID=2626254 RepID=UPI0011EDB535)

HSP 1 Score: 140 bits (352), Expect = 1.680e-39
Identity = 74/141 (52.48%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   10 SQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGREL-------WKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREIL 411
            SQW   PFT+  V Y  AE +MMA KARLFGD+   +AI+A++ PR+ K LGR +       W+    TIV +G+ AKF+Q  E+R  LL TGDR L E SP D++WGIGL+A DPRA +P +W G NLLG AL +ARE L
Sbjct:   33 SQWWPSPFTLGGVAYATAEHYMMAEKARLFGDEETAAAIVAASHPRDAKELGRRVRDFDEQTWRDNRVTIVTKGSEAKFAQNEELRDYLLGTGDRILVEASPLDRVWGIGLAADDPRAETPAAWRGENLLGFALMTAREAL 173          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A4R4SH62_9ACTN (NADAR family protein n=1 Tax=Actinomadura sp. GC306 TaxID=2530367 RepID=A0A4R4SH62_9ACTN)

HSP 1 Score: 140 bits (352), Expect = 1.730e-39
Identity = 76/141 (53.90%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   10 SQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGREL-------WKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREIL 411
            SQW   PFT+D V Y  AE +MMA KARLFGDD   +AIL S DPR  K LGR +       WK     IV +G  AKF+Q  +MR  LL T  R L E SP D++WGIGL A DPRA +PDSW G NLLG AL + R+ L
Sbjct:   33 SQWCPSPFTVDGVTYATAEHYMMAEKARLFGDDQRAAAILTSPDPRRAKDLGRRVRNFDERTWKEHRVAIVTRGNEAKFAQHPDMRDYLLSTHPRVLVEASPRDRIWGIGLRADDPRAKTPDSWQGENLLGFALMTTRDAL 173          
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Match: A0A840FMM8_9BURK (NADAR domain-containing protein n=1 Tax=Variovorax guangxiensis TaxID=1775474 RepID=A0A840FMM8_9BURK)

HSP 1 Score: 140 bits (352), Expect = 2.460e-39
Identity = 77/146 (52.74%), Postives = 89/146 (60.96%), Query Frame = 1
Query:    1 SAFSQWTQLPFTIDLVEYNCAEQFMMASKARLFGDDTALSAILASNDPREQKRLGREL-------WKSLCETIVLQGTLAKFSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*NLLGQALESAREILRQ 417
            S FSQW +  FT+D V Y  AE FMMA KARLFGD+     ILA+  P E K+LGRE+       W +    IV QG +AKFSQ  E+   LL TG   L E SP D +WGIGL+A DP A  P  W G NLLG AL +ARE LRQ
Sbjct:   41 SCFSQWFEAAFTVDGVRYRTAEHFMMAGKARLFGDEEICVRILAARTPGEAKKLGREIRGFDEAAWAAARLDIVTQGNIAKFSQNAELGAFLLGTGHHVLVEASPVDPIWGIGLAANDPLAQDPREWKGLNLLGFALMAAREALRQ 186          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig764.18905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q4ET32_9BACT1.100e-4150.00NADAR family protein n=1 Tax=Phycisphaeraceae bact... [more]
A0A1I0JJ35_9BACL2.430e-4151.39NADAR domain-containing protein n=1 Tax=Paenibacil... [more]
UPI001CCB45E43.630e-4151.05NADAR family protein n=1 Tax=Nannocystis pusilla T... [more]
A0A5S5BRJ3_9BACL4.590e-4151.37NADAR domain-containing protein n=1 Tax=Paenibacil... [more]
UPI00048F1B331.430e-4052.78NADAR family protein n=1 Tax=Paenibacillus sp. UNC... [more]
A0A1I2I2Z7_9DELT1.600e-4050.69NADAR domain-containing protein n=2 Tax=Nannocysti... [more]
A0A231QYY5_9BACL1.500e-3949.01NADAR domain-containing protein n=3 Tax=Cohnella T... [more]
UPI0011EDB5351.680e-3952.48NADAR family protein n=2 Tax=unclassified Actinoma... [more]
A0A4R4SH62_9ACTN1.730e-3953.90NADAR family protein n=1 Tax=Actinomadura sp. GC30... [more]
A0A840FMM8_9BURK2.460e-3952.74NADAR domain-containing protein n=1 Tax=Variovorax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig764contigF-serratus_M_contig764:333887..334324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue3.7e-21
Seed eggNOG ortholog529818.AMSG_00950T0
KEGG koko:K09935
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF1768)
EggNOG OGs2S4FY@2759,COG3236@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size438
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig764.18905.1prot_F-serratus_M_contig764.18905.1Fucus serratus malepolypeptideF-serratus_M_contig764 333956..334252 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932294.3987203-UTR-F-serratus_M_contig764:333886..3339551622932294.3987203-UTR-F-serratus_M_contig764:333886..333955Fucus serratus maleUTRF-serratus_M_contig764 333887..333955 -
1690964239.274345-UTR-F-serratus_M_contig764:333886..3339551690964239.274345-UTR-F-serratus_M_contig764:333886..333955Fucus serratus maleUTRF-serratus_M_contig764 333887..333955 -
1622932294.4357297-UTR-F-serratus_M_contig764:334252..3343241622932294.4357297-UTR-F-serratus_M_contig764:334252..334324Fucus serratus maleUTRF-serratus_M_contig764 334253..334324 -
1690964239.29826-UTR-F-serratus_M_contig764:334252..3343241690964239.29826-UTR-F-serratus_M_contig764:334252..334324Fucus serratus maleUTRF-serratus_M_contig764 334253..334324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932294.4183884-CDS-F-serratus_M_contig764:333955..3342521622932294.4183884-CDS-F-serratus_M_contig764:333955..334252Fucus serratus maleCDSF-serratus_M_contig764 333956..334252 -
1690964239.288358-CDS-F-serratus_M_contig764:333955..3342521690964239.288358-CDS-F-serratus_M_contig764:333955..334252Fucus serratus maleCDSF-serratus_M_contig764 333956..334252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig764.18905.1

>prot_F-serratus_M_contig764.18905.1 ID=prot_F-serratus_M_contig764.18905.1|Name=mRNA_F-serratus_M_contig764.18905.1|organism=Fucus serratus male|type=polypeptide|length=99bp
MMASKARLFGDDTALSAILASNDPREQKRLGRELWKSLCETIVLQGTLAK
FSQTNEMRFALLQTGDRRLAEPSPHDKLWGIGLSACDPRASSPDSWCG*
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mRNA from alignment at F-serratus_M_contig764:333887..334324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig764.18905.1 ID=mRNA_F-serratus_M_contig764.18905.1|Name=mRNA_F-serratus_M_contig764.18905.1|organism=Fucus serratus male|type=mRNA|length=438bp|location=Sequence derived from alignment at F-serratus_M_contig764:333887..334324- (Fucus serratus male)
TCGGCCTTCTCACAATGGACGCAATTACCGTTCACCATAGACCTCGTCGA ATATAATTGCGCTGAACAGTTCATGATGGCCTCGAAAGCACGCCTATTCG GCGATGATACGGCACTCTCAGCCATCCTTGCCTCCAACGACCCCCGAGAG CAAAAACGCCTCGGCCGTGAGCTATGGAAATCTCTCTGCGAGACCATTGT ACTACAGGGGACCCTAGCAAAATTCTCCCAAACCAACGAGATGCGCTTCG CCCTCCTCCAAACCGGCGACCGCCGCCTCGCCGAACCAAGCCCTCACGAT AAACTGTGGGGCATCGGCCTGAGCGCCTGCGACCCGCGCGCCTCCTCCCC TGATTCCTGGTGCGGTTGAAATCTGCTCGGTCAGGCCTTAGAGAGCGCCC GCGAAATTCTTCGCCAAGATTTTAACACACCGCCCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig764:333887..334324-

>mRNA_F-serratus_M_contig764.18905.1 ID=mRNA_F-serratus_M_contig764.18905.1|Name=mRNA_F-serratus_M_contig764.18905.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig764:333887..334324- (Fucus serratus male)
ATGATGGCCTCGAAAGCACGCCTATTCGGCGATGATACGGCACTCTCAGC
CATCCTTGCCTCCAACGACCCCCGAGAGCAAAAACGCCTCGGCCGTGAGC
TATGGAAATCTCTCTGCGAGACCATTGTACTACAGGGGACCCTAGCAAAA
TTCTCCCAAACCAACGAGATGCGCTTCGCCCTCCTCCAAACCGGCGACCG
CCGCCTCGCCGAACCAAGCCCTCACGATAAACTGTGGGGCATCGGCCTGA
GCGCCTGCGACCCGCGCGCCTCCTCCCCTGATTCCTGGTGCGGTTGAATG
ATGGCCTCGAAAGCACGCCTATTCGGCGATGATACGGCACTCTCAGCCAT
CCTTGCCTCCAACGACCCCCGAGAGCAAAAACGCCTCGGCCGTGAGCTAT
GGAAATCTCTCTGCGAGACCATTGTACTACAGGGGACCCTAGCAAAATTC
TCCCAAACCAACGAGATGCGCTTCGCCCTCCTCCAAACCGGCGACCGCCG
CCTCGCCGAACCAAGCCCTCACGATAAACTGTGGGGCATCGGCCTGAGCG
CCTGCGACCCGCGCGCCTCCTCCCCTGATTCCTGGTGCGGTTGA
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