mRNA_F-serratus_M_contig764.18902.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig764.18902.1
Unique NamemRNA_F-serratus_M_contig764.18902.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig764.18902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig764contigF-serratus_M_contig764:22424..23595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size682
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig764.18902.1prot_F-serratus_M_contig764.18902.1Fucus serratus malepolypeptideF-serratus_M_contig764 22424..23443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932293.5511405-CDS-F-serratus_M_contig764:22423..227691622932293.5511405-CDS-F-serratus_M_contig764:22423..22769Fucus serratus maleCDSF-serratus_M_contig764 22424..22769 -
1690964238.753068-CDS-F-serratus_M_contig764:22423..227691690964238.753068-CDS-F-serratus_M_contig764:22423..22769Fucus serratus maleCDSF-serratus_M_contig764 22424..22769 -
1622932293.573654-CDS-F-serratus_M_contig764:23009..231761622932293.573654-CDS-F-serratus_M_contig764:23009..23176Fucus serratus maleCDSF-serratus_M_contig764 23010..23176 -
1690964238.7650511-CDS-F-serratus_M_contig764:23009..231761690964238.7650511-CDS-F-serratus_M_contig764:23009..23176Fucus serratus maleCDSF-serratus_M_contig764 23010..23176 -
1622932293.5876696-CDS-F-serratus_M_contig764:23428..234431622932293.5876696-CDS-F-serratus_M_contig764:23428..23443Fucus serratus maleCDSF-serratus_M_contig764 23429..23443 -
1690964238.7770872-CDS-F-serratus_M_contig764:23428..234431690964238.7770872-CDS-F-serratus_M_contig764:23428..23443Fucus serratus maleCDSF-serratus_M_contig764 23429..23443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932293.60439-UTR-F-serratus_M_contig764:23443..235951622932293.60439-UTR-F-serratus_M_contig764:23443..23595Fucus serratus maleUTRF-serratus_M_contig764 23444..23595 -
1690964238.7893014-UTR-F-serratus_M_contig764:23443..235951690964238.7893014-UTR-F-serratus_M_contig764:23443..23595Fucus serratus maleUTRF-serratus_M_contig764 23444..23595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig764.18902.1

>prot_F-serratus_M_contig764.18902.1 ID=prot_F-serratus_M_contig764.18902.1|Name=mRNA_F-serratus_M_contig764.18902.1|organism=Fucus serratus male|type=polypeptide|length=176bp
MLSQEVAWPLTPKNGACSEQNLDGRTLNTGSSAYSGERCRHPLQAFLTTA
KSYDFTNNITRLSGDCAAEESLGEGTNHERQCRAQSPARSKTSLKPIRTI
GISSQSTSEKAYDLHATHYDGEAFDLMRPIFSPQALVPRACSSSLITPAS
ELSWQNHRRPHRSPSVDQARKNGERI
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mRNA from alignment at F-serratus_M_contig764:22424..23595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig764.18902.1 ID=mRNA_F-serratus_M_contig764.18902.1|Name=mRNA_F-serratus_M_contig764.18902.1|organism=Fucus serratus male|type=mRNA|length=1172bp|location=Sequence derived from alignment at F-serratus_M_contig764:22424..23595- (Fucus serratus male)
TTACGGCAGTGCCACTTGCAAGAAAACCGGTTCGATTCGTAAAGGTCAAC
AAAGCCGAAGCATCAGCCGCAGACATCATGCAGAAACAGGCGCGGCATCA
AAATATGCTTATATAGTCGACAGTTCGGCCCGAGCTTCTGCAAAAAGCGA
CTATGCTCTCCCAAGAGGTGAAAGTGTGGGGTGTTTGGCCTGTTTAGATA
CTTAAATGCCTTCGAGAAAGAAAGTGGTTTAGTCTACAATAATAATGCTC
TTACCGTGTGTAGTATTATTTTGCGTTGAACGCCGATCAGTCGGCAATAC
CTACTTATGTACATCGTTTAACTGACTGGCTTAATTAATAGTTATGGTTG
CTCGAGCATATCGTGAGTCCGTTCACCCAACAAACAGACCCCTTCCCCCT
TTCGACATCACTAACAAAGGTCGCATGGCCGCTAACGCCAAAGAATGGCG
CGTGTTCCGAACAAAATCTCGACGGAAGAACTTTAAATACTGGCTCCTCG
GCTTATTCTGGGGAAAGATGCAGACATCCACTGCAAGCTTTTTTGACAAC
CGCGAAGTCTTATGATTTCACCAATAACATCACCAGGCAAGAAGTTTTCG
CACGAAGTAGGTCGAACATAGCCTTGGGCGGGCTGTTTTCCCGGCAGAAT
CCTCGACAACGGCCAACATGCGCAGCGTGCCCCCGACAGGTCTCACTTCT
TCGACTGTCGAGGTTATACGATCCATCTCCAGTTGACATGGCTTCCGATT
TCCCGCTTGTAGAGCCGTCCCAGCTACGAGTTGAAACTCACGTAATCATG
GGTGGACGCGTTCACACGACAAGCAGGTTATCTGGCGATTGCGCCGCGGA
AGAATCTTTAGGCGAGGGAACGAACCATGAGAGACAATGTCGTGCCCAAT
CACCAGCAAGGTCAAAGACTTCATTAAAACCCATTCGGACCATCGGAATT
TCATCGCAAAGCACAAGCGAGAAGGCGTATGATCTACATGCCACACACTA
CGATGGCGAAGCGTTCGACCTGATGCGTCCTATCTTCTCTCCCCAAGCGC
TTGTTCCTCGCGCTTGCTCGTCGAGCCTCATCACGCCCGCCTCTGAACTG
TCCTGGCAAAACCATAGACGCCCCCATCGTTCCCCGTCAGTGGATCAAGC
GCGTAAGAATGGCGAGAGGATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig764:22424..23595-

>mRNA_F-serratus_M_contig764.18902.1 ID=mRNA_F-serratus_M_contig764.18902.1|Name=mRNA_F-serratus_M_contig764.18902.1|organism=Fucus serratus male|type=CDS|length=1056bp|location=Sequence derived from alignment at F-serratus_M_contig764:22424..23595- (Fucus serratus male)
ATGCTCTCCCAAGAGATGCTCTCCCAAGAGGTCGCATGGCCGCTAACGCC
AAAGAATGGCGCGTGTTCCGAACAAAATCTCGACGGAAGAACTTTAAATA
CTGGCTCCTCGGCTTATTCTGGGGAAAGATGCAGACATCCACTGCAAGCT
TTTTTGACAACCGCGAAGTCTTATGATTTCACCAATAACATCACCAGGTC
GCATGGCCGCTAACGCCAAAGAATGGCGCGTGTTCCGAACAAAATCTCGA
CGGAAGAACTTTAAATACTGGCTCCTCGGCTTATTCTGGGGAAAGATGCA
GACATCCACTGCAAGCTTTTTTGACAACCGCGAAGTCTTATGATTTCACC
AATAACATCACCAGGTTATCTGGCGATTGCGCCGCGGAAGAATCTTTAGG
CGAGGGAACGAACCATGAGAGACAATGTCGTGCCCAATCACCAGCAAGGT
CAAAGACTTCATTAAAACCCATTCGGACCATCGGAATTTCATCGCAAAGC
ACAAGCGAGAAGGCGTATGATCTACATGCCACACACTACGATGGCGAAGC
GTTCGACCTGATGCGTCCTATCTTCTCTCCCCAAGCGCTTGTTCCTCGCG
CTTGCTCGTCGAGCCTCATCACGCCCGCCTCTGAACTGTCCTGGCAAAAC
CATAGACGCCCCCATCGTTCCCCGTCAGTGGATCAAGCGCGTAAGAATGG
CGAGAGGATCGTTATCTGGCGATTGCGCCGCGGAAGAATCTTTAGGCGAG
GGAACGAACCATGAGAGACAATGTCGTGCCCAATCACCAGCAAGGTCAAA
GACTTCATTAAAACCCATTCGGACCATCGGAATTTCATCGCAAAGCACAA
GCGAGAAGGCGTATGATCTACATGCCACACACTACGATGGCGAAGCGTTC
GACCTGATGCGTCCTATCTTCTCTCCCCAAGCGCTTGTTCCTCGCGCTTG
CTCGTCGAGCCTCATCACGCCCGCCTCTGAACTGTCCTGGCAAAACCATA
GACGCCCCCATCGTTCCCCGTCAGTGGATCAAGCGCGTAAGAATGGCGAG
AGGATC
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