mRNA_F-serratus_M_contig7635.18900.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7635.18900.1
Unique NamemRNA_F-serratus_M_contig7635.18900.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7635.18900.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.040e-22
Identity = 58/140 (41.43%), Postives = 79/140 (56.43%), Query Frame = 1 
Query:    1 TKVLTVEVRELFAAFVVDGDGNCFWRAVARCLWSSDCFWRQLKLVVLGYAAANAEDLVTEGRHL--HQSVIYYSTATFNKFRRSVRGKGG------DKFSVMLLTEIKDLCPSGGWGGALSGLLTSEALGITVKIVDPND 396
            T +LT E+R+ F A  V+GDGNCFWR++A+ LW +D +WRQLKL VL ++A N E LV EG  L     +I+Y      K     RG  G      D  + MLL  I     +  WGG L+G+L +E  G+ +K+  P D
Sbjct:   91 TMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAK--HIYRGPDGKVDHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFD 228
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BLAST of mRNA_F-serratus_M_contig7635.18900.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.690e-22
Identity = 61/135 (45.19%), Postives = 79/135 (58.52%), Query Frame = 1 
Query:   25 RELFAAFVVDGDGNCFWRAVARCLWSSDCFWRQLKLVVLGYAAANAEDLVTEGRHL-----------HQSVIYYSTATFNKFRRSVRGKGGDKFSVMLLTEIKDLCPSGGWGGALSGLLTSEALGITVKIVDPND 396
            +E + A  V GDGNC WR++A+CLW SD +W QLKLVVL +AAA+AE+LV+EGR L           H  + Y  +AT      SV      + S MLL  +   C    WGG  + LL S+AL ITVK++ PND
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVGAAPSVA-----QTSRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPND 132
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7635.18900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE1.040e-2241.43SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE2.690e-2245.19SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7635contigF-serratus_M_contig7635:2273..2668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932293.2575178-CDS-F-serratus_M_contig7635:2272..26681622932293.2575178-CDS-F-serratus_M_contig7635:2272..2668Fucus serratus maleCDSF-serratus_M_contig7635 2273..2668 +
1690964238.626977-CDS-F-serratus_M_contig7635:2272..26681690964238.626977-CDS-F-serratus_M_contig7635:2272..2668Fucus serratus maleCDSF-serratus_M_contig7635 2273..2668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7635.18900.1prot_F-serratus_M_contig7635.18900.1Fucus serratus malepolypeptideF-serratus_M_contig7635 2273..2668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7635.18900.1

>prot_F-serratus_M_contig7635.18900.1 ID=prot_F-serratus_M_contig7635.18900.1|Name=mRNA_F-serratus_M_contig7635.18900.1|organism=Fucus serratus male|type=polypeptide|length=132bp
TKVLTVEVRELFAAFVVDGDGNCFWRAVARCLWSSDCFWRQLKLVVLGYA
AANAEDLVTEGRHLHQSVIYYSTATFNKFRRSVRGKGGDKFSVMLLTEIK
DLCPSGGWGGALSGLLTSEALGITVKIVDPND
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mRNA from alignment at F-serratus_M_contig7635:2273..2668+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7635.18900.1 ID=mRNA_F-serratus_M_contig7635.18900.1|Name=mRNA_F-serratus_M_contig7635.18900.1|organism=Fucus serratus male|type=mRNA|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig7635:2273..2668+ (Fucus serratus male)
ACAAAAGTGCTGACTGTGGAGGTGCGCGAGTTGTTTGCAGCTTTCGTCGT
AGACGGCGACGGAAACTGCTTTTGGCGTGCAGTTGCTCGCTGCTTGTGGA
GCAGTGATTGCTTCTGGCGACAACTAAAGCTCGTGGTGCTAGGTTACGCC
GCAGCTAATGCCGAGGACCTTGTGACAGAAGGTCGCCATCTTCACCAGTC
GGTAATCTACTACAGTACAGCCACATTCAATAAGTTTCGACGAAGTGTTA
GAGGCAAAGGCGGCGACAAATTCTCGGTCATGCTATTGACAGAGATAAAG
GATTTGTGCCCGAGCGGCGGATGGGGCGGCGCCCTTTCGGGCCTCTTAAC
GTCGGAAGCGTTAGGTATCACGGTAAAAATCGTCGACCCGAACGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig7635:2273..2668+

>mRNA_F-serratus_M_contig7635.18900.1 ID=mRNA_F-serratus_M_contig7635.18900.1|Name=mRNA_F-serratus_M_contig7635.18900.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig7635:2273..2668+ (Fucus serratus male)
ACAAAAGTGCTGACTGTGGAGGTGCGCGAGTTGTTTGCAGCTTTCGTCGT
AGACGGCGACGGAAACTGCTTTTGGCGTGCAGTTGCTCGCTGCTTGTGGA
GCAGTGATTGCTTCTGGCGACAACTAAAGCTCGTGGTGCTAGGTTACGCC
GCAGCTAATGCCGAGGACCTTGTGACAGAAGGTCGCCATCTTCACCAGTC
GGTAATCTACTACAGTACAGCCACATTCAATAAGTTTCGACGAAGTGTTA
GAGGCAAAGGCGGCGACAAATTCTCGGTCATGCTATTGACAGAGATAAAG
GATTTGTGCCCGAGCGGCGGATGGGGCGGCGCCCTTTCGGGCCTCTTAAC
GTCGGAAGCGTTAGGTATCACGGTAAAAATCGTCGACCCGAACGATACAA
AAGTGCTGACTGTGGAGGTGCGCGAGTTGTTTGCAGCTTTCGTCGTAGAC
GGCGACGGAAACTGCTTTTGGCGTGCAGTTGCTCGCTGCTTGTGGAGCAG
TGATTGCTTCTGGCGACAACTAAAGCTCGTGGTGCTAGGTTACGCCGCAG
CTAATGCCGAGGACCTTGTGACAGAAGGTCGCCATCTTCACCAGTCGGTA
ATCTACTACAGTACAGCCACATTCAATAAGTTTCGACGAAGTGTTAGAGG
CAAAGGCGGCGACAAATTCTCGGTCATGCTATTGACAGAGATAAAGGATT
TGTGCCCGAGCGGCGGATGGGGCGGCGCCCTTTCGGGCCTCTTAACGTCG
GAAGCGTTAGGTATCACGGTAAAAATCGTCGACCCGAACGAT
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