mRNA_F-serratus_M_contig7632.18899.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7632.18899.1
Unique NamemRNA_F-serratus_M_contig7632.18899.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: D7G1F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1F3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.190e-37
Identity = 64/99 (64.65%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 KVIDYLDDLDEGKDPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDFS 297
            + +DYL DLDEG DP ++E+IK RW  VE A+R+IL +FFR G    FDGSG +N YDAGSCVDGRLTS WNWCSK+EKK F ++F  SGF GF+GDFS
Sbjct:  246 QALDYLTDLDEGSDPVVLEYIKGRWGNVEYAQRYILRNFFRFG----FDGSGGDNNYDAGSCVDGRLTSAWNWCSKIEKKSFVNVFKLSGFSGFDGDFS 340          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A6H5KSQ1_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ1_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 4.100e-35
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 KVIDYLDDLDEGKDPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDFS 297
            + +DYL DL EG DP ++E++K RW TVE A+R+IL +FFR G    FDGSG +N YDAGSCVDGRLTS WNWCSK+EKK F ++F  SGF GF+GDFS
Sbjct: 1122 QALDYLTDLGEGSDPVVLEYVKGRWGTVEYAQRYILRNFFRFG----FDGSGGDNNYDAGSCVDGRLTSAWNWCSKIEKKSFVNVFKLSGFSGFDGDFS 1216          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A7S2N294_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N294_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 2.320e-27
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:    4 VIDYLDDLDEGKD--PPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDFS 297
            V+  LD L+E  +  P + +++K  + + E A+  IL DFFR     AFDGSGA+N YDAGSC+DGRLTS WNWCSKL KK ++HLF  +GF GF+GDFS
Sbjct:  288 VLGVLDSLEEVVETAPGVKDYVKALYGSAEAARHAILTDFFRH----AFDGSGADNYYDAGSCIDGRLTSAWNWCSKLSKKQYHHLFKMAGFVGFDGDFS 383          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A836C8L9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8L9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.250e-27
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    4 VIDYLDDLDEGK--DPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDFS 297
            VIDYL+ L      D   +E++   ++  + A++ IL DFFR     AFDGSGA+N  DAGSC+DGRLTS WNWCSKLEKK ++ LFM SGF GF+GDFS
Sbjct:  154 VIDYLEGLKNAATADGRALEYVNRIFKGPDRAQQRILADFFRH----AFDGSGADNNNDAGSCIDGRLTSCWNWCSKLEKKSYHRLFMLSGFIGFDGDFS 249          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: D8PQN1_SCHCM (B box-type domain-containing protein n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8PQN1_SCHCM)

HSP 1 Score: 113 bits (282), Expect = 4.390e-27
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   43 PPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGD 291
            P +  +I+  + +VEGA+R IL DFFR G    FDGSGA+N +DAGSC+DGRLTS WNWCS LEKK F+HLF+ +GF GF+GD
Sbjct:  538 PAIASYIEDEFGSVEGAQREILSDFFRHG----FDGSGADNFFDAGSCIDGRLTSAWNWCSSLEKKRFFHLFLLTGFVGFDGD 616          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A0L0GC05_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GC05_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 1.150e-26
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1
Query:   40 DPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDF 294
            DP L E+IKT + +V+  KR IL+DFF+     AFDGSGA+N +DAGSC+DGRLTS WNWCS+LEKK +Y +F+ +GF GF+G+F
Sbjct:  548 DPGLAEYIKTTFTSVDNCKRVILNDFFKF----AFDGSGADNFFDAGSCIDGRLTSAWNWCSRLEKKRYYPVFLLTGFVGFDGEF 628          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A5C3NLH6_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Polyporus arcularius HHB13444 TaxID=1314778 RepID=A0A5C3NLH6_9APHY)

HSP 1 Score: 106 bits (265), Expect = 1.210e-26
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   37 KDPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGD 291
            ++P L  +I+  W + EG  R IL DFFR G    FDGSGA N +DAGSC+DGRLTS WNWCS LEKK F+ +F+ +GF GF+G+
Sbjct:  136 ENPALRSYIEDEWGSTEGLSREILADFFRHG----FDGSGAGNYFDAGSCIDGRLTSAWNWCSTLEKKRFFPVFLLTGFIGFDGE 216          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A7S3A7Y8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A7Y8_9RHOD)

HSP 1 Score: 106 bits (264), Expect = 1.830e-26
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 1
Query:   40 DPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDF 294
            D  L  +IK  ++  E AKR IL DFFR G    FDGSGA+N YDAGSC+DGRLTS WNWCS +EKK ++ LF+  GF GF+G F
Sbjct:  140 DDDLRAYIKDNYRDAEAAKRLILKDFFRHG----FDGSGADNFYDAGSCIDGRLTSAWNWCSLIEKKSYFSLFLLCGFTGFDGRF 220          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A7R9V045_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V045_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 3.050e-26
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   34 GKDPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDF 294
            G+DP +  ++ + + +VEGA+  IL DF R     AFDGSGA+N +DAGSC+DGRLTS WNWCSKLEKK+++ +F  +GF  F+GDF
Sbjct:  115 GRDPNIAAYLSSIFGSVEGARSAILLDFCRH----AFDGSGADNFFDAGSCIDGRLTSAWNWCSKLEKKNYFPVFKLAGFTSFDGDF 197          
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Match: A0A061RKR6_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKR6_9CHLO)

HSP 1 Score: 107 bits (268), Expect = 5.880e-26
Identity = 48/86 (55.81%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   37 KDPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDGSGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDF 294
            +DP ++ ++K  + +VE  ++ IL DFFR     AFDGSGA+N +DAGSC+DGRLTS WNWCSK+EKK +Y LF  +GF GF+G+F
Sbjct:  270 RDPNILAYVKATFGSVESCRKSILADFFRH----AFDGSGADNFFDAGSCIDGRLTSAWNWCSKVEKKVYYPLFKMAGFVGFDGEF 351          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7632.18899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F3_ECTSI2.190e-3764.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSQ1_9PHAE4.100e-3563.64B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A7S2N294_9EUKA2.320e-2755.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A836C8L9_9STRA3.250e-2756.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8PQN1_SCHCM4.390e-2761.45B box-type domain-containing protein n=1 Tax=Schiz... [more]
A0A0L0GC05_9EUKA1.150e-2660.00Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A5C3NLH6_9APHY1.210e-2656.47Uncharacterized protein (Fragment) n=1 Tax=Polypor... [more]
A0A7S3A7Y8_9RHOD1.830e-2658.82Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7R9V045_9CHLO3.050e-2655.17Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A061RKR6_9CHLO5.880e-2655.81Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7632contigF-serratus_M_contig7632:627..2152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D7G1F3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF2009)
EggNOG OGs28J77@1,2QRJJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size300
Cds size300
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7632.18899.1prot_F-serratus_M_contig7632.18899.1Fucus serratus malepolypeptideF-serratus_M_contig7632 627..2152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932293.152983-CDS-F-serratus_M_contig7632:626..7661622932293.152983-CDS-F-serratus_M_contig7632:626..766Fucus serratus maleCDSF-serratus_M_contig7632 627..766 +
1690964238.5918286-CDS-F-serratus_M_contig7632:626..7661690964238.5918286-CDS-F-serratus_M_contig7632:626..766Fucus serratus maleCDSF-serratus_M_contig7632 627..766 +
1622932293.1790857-CDS-F-serratus_M_contig7632:1514..16021622932293.1790857-CDS-F-serratus_M_contig7632:1514..1602Fucus serratus maleCDSF-serratus_M_contig7632 1515..1602 +
1690964238.6083338-CDS-F-serratus_M_contig7632:1514..16021690964238.6083338-CDS-F-serratus_M_contig7632:1514..1602Fucus serratus maleCDSF-serratus_M_contig7632 1515..1602 +
1622932293.2051876-CDS-F-serratus_M_contig7632:2080..21521622932293.2051876-CDS-F-serratus_M_contig7632:2080..2152Fucus serratus maleCDSF-serratus_M_contig7632 2081..2152 +
1690964238.617654-CDS-F-serratus_M_contig7632:2080..21521690964238.617654-CDS-F-serratus_M_contig7632:2080..2152Fucus serratus maleCDSF-serratus_M_contig7632 2081..2152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7632.18899.1

>prot_F-serratus_M_contig7632.18899.1 ID=prot_F-serratus_M_contig7632.18899.1|Name=mRNA_F-serratus_M_contig7632.18899.1|organism=Fucus serratus male|type=polypeptide|length=100bp
KVIDYLDDLDEGKDPPLMEFIKTRWQTVEGAKRHILHDFFRSGVSAAFDG
SGANNTYDAGSCVDGRLTSVWNWCSKLEKKDFYHLFMCSGFRGFNGDFS*
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mRNA from alignment at F-serratus_M_contig7632:627..2152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7632.18899.1 ID=mRNA_F-serratus_M_contig7632.18899.1|Name=mRNA_F-serratus_M_contig7632.18899.1|organism=Fucus serratus male|type=mRNA|length=1526bp|location=Sequence derived from alignment at F-serratus_M_contig7632:627..2152+ (Fucus serratus male)
AAGGTGATCGATTACCTCGACGACCTGGACGAAGGCAAAGACCCGCCATT GATGGAGTTCATCAAGACGCGGTGGCAGACTGTAGAAGGGGCCAAGCGGC ATATCCTCCACGATTTCTTCAGGAGTGGGGTGAGTGCGGCGTGATGAATG ACCAGTACTACAGTGTTCGAATATCTTTTATTGTCCCTCGCGGTATTTTA CCGGAGGATTGTATACACCCCGGAGTCCCCCCCCCCCATTTTTCGAAGGC CTCGATTTCATTAAAAAAATCCTCAAATGTTTGTTCTTGGAGGCGAGGCG GGTTTTCGTGTCTACGGGAGGTGTCTTTTAGAGCACACAACCCCTTTTCT CACCTTCGGTATACCCCGTATTATAGTATAGTATATTATAGTATATTATA GTATATTGTGTAATGAATATGGTACATTACTTACGGCAATCCGTATTGCA TGCCAAACACTATACACGGTGTATGTAATGTGGGACCTTTGCGACTTGGA TGTGTCGATATCGCTTGAGAGGCACGATGTATTTTCTAGTAAGTATATGG TATCAATGTATTGTATTAAAAATATATTCTCGCAAAGCACTGGTCGGAAG GGTTGATGATTAAGAACGCCAGTTGAAGATCAAGGGTTATGTTACAGACT ACATCACCAATTCCTTGTACTTGCATGTTGTTGCAATCGACTTATAGTAG CTCTTTGGCCGGATGACGAACCGATGATGACCCTAGAAACCCTAGGTGGT ATATTATATGGAGGCGTGTGTGTTTGAACGGAAGTGGTTGATACCTTGTC TTGGCTGTATTGCTCCATGTTCGTTGGACAAGCGTCAGTAGAAAATAGAC TATTAATACCTCGACTACGACTTCGCACTCACAATCAGGTTCGATGGTTC TGGCGCGAACAATACTTACGACGCTGGAAGCTGTGTCGACGGGAGGCTCA CCAGCGTCTGGAACTGGTGCAGCAAGGTAAATACTAGGAGGCTCACTTGG GTTGGCTAGACTATTAATAGCATTAGGGAGTGGGAACGAAGGGCGGTGGG GGGAACGGGACAGGACGAAACGAAGCTTTGTGTACTCCTGCTTTACGTAT GAGTAAAATGACAGTTTTTTAGGCTTGGAAGGAAGAGAAATGCTGCTGTT CCCAACAGACTTTGCTGTACCACTTGGTCAAACGTTGGTACTGTAGCTGT GTAACCGAAGAACTCCTTTTTTGTGGAGGATCAACGAGATCTGGCTGAAG GCACTCTCTAGCCCTCGCTGATTTGCTTCGCGATCATGACGTGATATCGC GCTTGGCGTGCCTCAACGAGTGGATCAAGGGCGTGCAACCATTGCTCGAA CGTTCAATTGACTTTTCCCCACATATTTACTTGTAGTTCCTTTCATCCTC CCCCTCGTGACTGTCTGTGCTTCTTCTGTGTATGTGTCTGTTTATGTTTT GCAGCTGGAAAAGAAAGATTTCTACCACCTCTTCATGTGCAGCGGTTTCC GTGGGTTTAACGGAGACTTCAGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7632:627..2152+

>mRNA_F-serratus_M_contig7632.18899.1 ID=mRNA_F-serratus_M_contig7632.18899.1|Name=mRNA_F-serratus_M_contig7632.18899.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig7632:627..2152+ (Fucus serratus male)
AAGGTGATCGATTACCTCGACGACCTGGACGAAGGCAAAGACCCGCCATT
GATGGAGTTCATCAAGACGCGGTGGCAGACTGTAGAAGGGGCCAAGCGGC
ATATCCTCCACGATTTCTTCAGGAGTGGGGTGAGTGCGGCAAGGTGATCG
ATTACCTCGACGACCTGGACGAAGGCAAAGACCCGCCATTGATGGAGTTC
ATCAAGACGCGGTGGCAGACTGTAGAAGGGGCCAAGCGGCATATCCTCCA
CGATTTCTTCAGGAGTGGGGTGAGTGCGGCGTTCGATGGTTCTGGCGCGA
ACAATACTTACGACGCTGGAAGCTGTGTCGACGGGAGGCTCACCAGCGTC
TGGAACTGGTGCAGCAAGGTTCGATGGTTCTGGCGCGAACAATACTTACG
ACGCTGGAAGCTGTGTCGACGGGAGGCTCACCAGCGTCTGGAACTGGTGC
AGCAAGCTGGAAAAGAAAGATTTCTACCACCTCTTCATGTGCAGCGGTTT
CCGTGGGTTTAACGGAGACTTCAGCTGACTGGAAAAGAAAGATTTCTACC
ACCTCTTCATGTGCAGCGGTTTCCGTGGGTTTAACGGAGACTTCAGCTGA
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