mRNA_F-serratus_M_contig763.18894.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig763.18894.1
Unique NamemRNA_F-serratus_M_contig763.18894.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: D8LSB2_ECTSI (Sacchrp_dh_NADP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 9.800e-12
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEIV 590
            T++M AECGLCLALD+  LE KKGGVLTTA+AMGMPL++R+  AGMT++I+
Sbjct:  368 TAKMLAECGLCLALDD--LEYKKGGVLTTASAMGMPLVDRLNKAGMTFKIL 416          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: D0LFM8_HALO1 (Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LFM8_HALO1)

HSP 1 Score: 65.1 bits (157), Expect = 1.330e-8
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEIV 590
            TS+M AE  LCLA D DRL  + G VLTTATAMG PL+ER++AAG+ +E+V
Sbjct:  340 TSKMVAESALCLAFDRDRLPERTG-VLTTATAMGQPLLERLQAAGIDFEVV 389          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A2P6VAE6_9CHLO (Saccharopine dehydrogenase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAE6_9CHLO)

HSP 1 Score: 64.3 bits (155), Expect = 3.300e-8
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLES----KKGGVLTTATAMGMPLIERMRAAGMTYEIVQ 593
            TS+M  E  LCLAL +  L+     +KGGVLT A+AMGM L+ER+RAAGMTY+I++
Sbjct:  756 TSRMLLESALCLALQQQELDKADDLQKGGVLTAASAMGMVLVERLRAAGMTYKILE 811          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A838PSW3_9ACTN (Saccharopine dehydrogenase NADP-binding domain-containing protein n=1 Tax=Thermoleophilaceae bacterium TaxID=2732252 RepID=A0A838PSW3_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 3.440e-8
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3
Query:  432 LLTSQMFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEIVQ 593
            L TS M  E  LCLALD DRL ++  GVLT AT MG PL++R+RAAG TYE+++
Sbjct:  357 LATSVMLGESALCLALDGDRLPAR-AGVLTPATGMGTPLVDRLRAAGHTYEVLR 409          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A2V0PKC4_9CHLO (Saccharopine dehydrogenase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PKC4_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 3.500e-8
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLES---KKGGVLTTATAMGMPLIERMRAAGMTYEIVQG*SLA 608
            TS+M  E GLCLALD +RL+    ++GGVLT A+AMG+ L +R+R+AG+T+++V+  +LA
Sbjct:  361 TSRMLLEAGLCLALDGERLKQAGLRQGGVLTPASAMGLVLADRLRSAGITFDVVKSPALA 420          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A6J4SIT7_9ACTN (Putative membrane protein n=1 Tax=uncultured Solirubrobacterales bacterium TaxID=768556 RepID=A0A6J4SIT7_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 4.670e-8
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 3
Query:  432 LLTSQMFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEI 587
            L TS M  E  LCLALD DRL S+  GVLT ATAMG  L+ER+RAAG TYE+
Sbjct:  360 LATSVMLGESALCLALDGDRLPSR-AGVLTPATAMGTTLVERLRAAGHTYEV 410          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A2P6TUA0_CHLSO (Saccharopine dehydrogenase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TUA0_CHLSO)

HSP 1 Score: 62.4 bits (150), Expect = 1.520e-7
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLESKK----GGVLTTATAMGMPLIERMRAAGMTYEIVQG 596
            TS+M  E  LCLAL +  L++ +    GGVLT A+AMGM LIER+RAAGMT+++++G
Sbjct:  900 TSRMALEAALCLALQQKELDASRDVQQGGVLTPASAMGMLLIERLRAAGMTFKVLEG 956          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A250WVW5_9CHLO (Sacchrp_dh_NADP domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WVW5_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.570e-7
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:  432 LLTSQMFAECGLCLALDEDRLESK---KGGVLTTATAMGMPLIERMRAAGMTYEIVQ 593
            L TS+M  E GLCLAL++ RL ++   + GV+T A AMGM L+ER+RAAG T+E+V+
Sbjct:  365 LSTSRMVLEAGLCLALEDQRLLAQGCAQSGVMTAAAAMGMVLVERLRAAGFTWEVVR 421          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A0S8BYE4_9DELT (Saccharopine dehydrogenase n=1 Tax=Myxococcales bacterium SG8_38 TaxID=1703407 RepID=A0A0S8BYE4_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 3.760e-7
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEI 587
            T+ M +E  LCLAL    L+++ GG+LT A+AMGMPLIER+RAAGMT+E+
Sbjct:  363 TAVMLSESALCLALQGAELKTE-GGILTPASAMGMPLIERLRAAGMTFEV 411          
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Match: A0A3A8QAR8_9DELT (Saccharopine dehydrogenase n=3 Tax=Corallococcus TaxID=83461 RepID=A0A3A8QAR8_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 3.800e-7
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  438 TSQMFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEI 587
            TS+M AE GLCLA D      K+GGVLT A+AMGM L+ER+R AGMT+E+
Sbjct:  369 TSRMLAESGLCLAFDT---LPKRGGVLTPASAMGMVLVERLRKAGMTFEV 415          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig763.18894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB2_ECTSI9.800e-1268.63Sacchrp_dh_NADP domain-containing protein n=2 Tax=... [more]
D0LFM8_HALO11.330e-862.75Saccharopine dehydrogenase (NAD(+), L-glutamate-fo... [more]
A0A2P6VAE6_9CHLO3.300e-857.14Saccharopine dehydrogenase n=1 Tax=Micractinium co... [more]
A0A838PSW3_9ACTN3.440e-859.26Saccharopine dehydrogenase NADP-binding domain-con... [more]
A0A2V0PKC4_9CHLO3.500e-851.67Saccharopine dehydrogenase n=1 Tax=Raphidocelis su... [more]
A0A6J4SIT7_9ACTN4.670e-865.38Putative membrane protein n=1 Tax=uncultured Solir... [more]
A0A2P6TUA0_CHLSO1.520e-754.39Saccharopine dehydrogenase n=1 Tax=Chlorella sorok... [more]
A0A250WVW5_9CHLO1.570e-754.39Sacchrp_dh_NADP domain-containing protein n=1 Tax=... [more]
A0A0S8BYE4_9DELT3.760e-760.00Saccharopine dehydrogenase n=1 Tax=Myxococcales ba... [more]
A0A3A8QAR8_9DELT3.800e-762.00Saccharopine dehydrogenase n=3 Tax=Corallococcus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig763contigF-serratus_M_contig763:159634..160356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D8LSB2
KEGG koko:K09527,ko:K17261
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG3268@1,KOG2733@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04131,ko04147
Exons2
Model size352
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig763.18894.1prot_F-serratus_M_contig763.18894.1Fucus serratus malepolypeptideF-serratus_M_contig763 159758..159910 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932292.4107833-UTR-F-serratus_M_contig763:159633..1597571622932292.4107833-UTR-F-serratus_M_contig763:159633..159757Fucus serratus maleUTRF-serratus_M_contig763 159634..159757 -
1690964238.1922312-UTR-F-serratus_M_contig763:159633..1597571690964238.1922312-UTR-F-serratus_M_contig763:159633..159757Fucus serratus maleUTRF-serratus_M_contig763 159634..159757 -
1622932292.450855-UTR-F-serratus_M_contig763:160281..1603561622932292.450855-UTR-F-serratus_M_contig763:160281..160356Fucus serratus maleUTRF-serratus_M_contig763 160282..160356 -
1690964238.2152953-UTR-F-serratus_M_contig763:160281..1603561690964238.2152953-UTR-F-serratus_M_contig763:160281..160356Fucus serratus maleUTRF-serratus_M_contig763 160282..160356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932292.4306428-CDS-F-serratus_M_contig763:159757..1599101622932292.4306428-CDS-F-serratus_M_contig763:159757..159910Fucus serratus maleCDSF-serratus_M_contig763 159758..159910 -
1690964238.2049677-CDS-F-serratus_M_contig763:159757..1599101690964238.2049677-CDS-F-serratus_M_contig763:159757..159910Fucus serratus maleCDSF-serratus_M_contig763 159758..159910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig763.18894.1

>prot_F-serratus_M_contig763.18894.1 ID=prot_F-serratus_M_contig763.18894.1|Name=mRNA_F-serratus_M_contig763.18894.1|organism=Fucus serratus male|type=polypeptide|length=51bp
MFAECGLCLALDEDRLESKKGGVLTTATAMGMPLIERMRAAGMTYEIVQG
*
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mRNA from alignment at F-serratus_M_contig763:159634..160356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig763.18894.1 ID=mRNA_F-serratus_M_contig763.18894.1|Name=mRNA_F-serratus_M_contig763.18894.1|organism=Fucus serratus male|type=mRNA|length=723bp|location=Sequence derived from alignment at F-serratus_M_contig763:159634..160356- (Fucus serratus male)
GGGGAGAAGGAAATCATATGTCGCGCTAAGATCGGCAGTGACAAGGGCGA CGCAGGCTACAAGGAGACGGCGAAGGTATGTTTAAACATTTGTGTTTGCG ATAGCTCTGGCGATTCTTCGCGCACGGTCACGCCACTTAGGTCAATTATT TACCCCGTCAATGCAACACGATCGAATTTCGTATGTTGTACTCTTCCGTG GAGAAAATGAAAAATGGAGCGCTGAGCGTTCTGAGTTTCTATTTCAGCAG CTCTTGGCGGGCTTCAGGGTTTTCCCGCCGGTGGAGAGGTCCGGTTTCGT CGTCTTCTCTTGAGAGTAACTCGTTTTGTGTGGCGCTTGTCCCTTCAAGG TCGGCCGCCCCGCCGCTCGGAAGTGTTCGGCCCCCGAATACGTAAGGCAT ATTTTGGATGCCCCCGCCCCCTATCGCTTTGCTCCTTACCTCGCAGATGT TCGCCGAATGTGGACTCTGCCTAGCTCTGGACGAAGACCGGCTTGAGTCG AAGAAAGGAGGCGTTTTGACTACGGCGACAGCTATGGGTATGCCACTGAT CGAGAGGATGCGCGCGGCTGGCATGACCTACGAGATCGTGCAAGGATAGT CCTTGGCCTAGCAGTATCATTGCTCTTGCCGAGACAGGGGTCCCGATTCG CCGTTGTAAGCCCCTACGGCTACTTTTTCCAGATACGCGTCGATAAAGTG GCAAACGTATACTTGAGTACTTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig763:159634..160356-

>mRNA_F-serratus_M_contig763.18894.1 ID=mRNA_F-serratus_M_contig763.18894.1|Name=mRNA_F-serratus_M_contig763.18894.1|organism=Fucus serratus male|type=CDS|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig763:159634..160356- (Fucus serratus male)
ATGTTCGCCGAATGTGGACTCTGCCTAGCTCTGGACGAAGACCGGCTTGA
GTCGAAGAAAGGAGGCGTTTTGACTACGGCGACAGCTATGGGTATGCCAC
TGATCGAGAGGATGCGCGCGGCTGGCATGACCTACGAGATCGTGCAAGGA
TAGATGTTCGCCGAATGTGGACTCTGCCTAGCTCTGGACGAAGACCGGCT
TGAGTCGAAGAAAGGAGGCGTTTTGACTACGGCGACAGCTATGGGTATGC
CACTGATCGAGAGGATGCGCGCGGCTGGCATGACCTACGAGATCGTGCAA
GGATAG
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