mRNA_F-serratus_M_contig762.18888.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig762.18888.1
Unique NamemRNA_F-serratus_M_contig762.18888.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig762.18888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig762contigF-serratus_M_contig762:72887..73206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932290.777182-UTR-F-serratus_M_contig762:72886..728911622932290.777182-UTR-F-serratus_M_contig762:72886..72891Fucus serratus maleUTRF-serratus_M_contig762 72887..72891 +
1690964237.4947114-UTR-F-serratus_M_contig762:72886..728911690964237.4947114-UTR-F-serratus_M_contig762:72886..72891Fucus serratus maleUTRF-serratus_M_contig762 72887..72891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932290.7988322-CDS-F-serratus_M_contig762:72891..732061622932290.7988322-CDS-F-serratus_M_contig762:72891..73206Fucus serratus maleCDSF-serratus_M_contig762 72892..73206 +
1690964237.5042005-CDS-F-serratus_M_contig762:72891..732061690964237.5042005-CDS-F-serratus_M_contig762:72891..73206Fucus serratus maleCDSF-serratus_M_contig762 72892..73206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig762.18888.1prot_F-serratus_M_contig762.18888.1Fucus serratus malepolypeptideF-serratus_M_contig762 72892..73206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig762.18888.1

>prot_F-serratus_M_contig762.18888.1 ID=prot_F-serratus_M_contig762.18888.1|Name=mRNA_F-serratus_M_contig762.18888.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MSTINQCLRDQYEQGLQLGLDLTKAAIIYRGIRHRRSCHGRRISENTFTQ
KLRVAYITIPRTAQHSARCVKREVVCNDRFLRRRVHSACLPIRGESGTNN
DKLFS
back to top

mRNA from alignment at F-serratus_M_contig762:72887..73206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig762.18888.1 ID=mRNA_F-serratus_M_contig762.18888.1|Name=mRNA_F-serratus_M_contig762.18888.1|organism=Fucus serratus male|type=mRNA|length=320bp|location=Sequence derived from alignment at F-serratus_M_contig762:72887..73206+ (Fucus serratus male)
CATAGATGTCGACAATCAATCAGTGCCTACGCGATCAATATGAACAGGGT
CTGCAGTTGGGTTTGGATTTGACCAAAGCCGCCATCATTTATAGGGGGAT
ACGTCATAGACGATCGTGTCATGGAAGGCGCATCTCTGAGAATACATTCA
CCCAGAAGCTCCGCGTAGCGTATATTACCATTCCTAGGACGGCTCAACAT
TCAGCGAGGTGTGTGAAGAGAGAAGTTGTGTGCAACGATCGGTTCCTTCG
CCGACGCGTGCATTCCGCTTGTCTTCCCATCAGAGGAGAAAGCGGTACAA
ACAACGACAAGCTGTTCTCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig762:72887..73206+

>mRNA_F-serratus_M_contig762.18888.1 ID=mRNA_F-serratus_M_contig762.18888.1|Name=mRNA_F-serratus_M_contig762.18888.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig762:72887..73206+ (Fucus serratus male)
ATGTCGACAATCAATCAGTGCCTACGCGATCAATATGAACAGGGTCTGCA
GTTGGGTTTGGATTTGACCAAAGCCGCCATCATTTATAGGGGGATACGTC
ATAGACGATCGTGTCATGGAAGGCGCATCTCTGAGAATACATTCACCCAG
AAGCTCCGCGTAGCGTATATTACCATTCCTAGGACGGCTCAACATTCAGC
GAGGTGTGTGAAGAGAGAAGTTGTGTGCAACGATCGGTTCCTTCGCCGAC
GCGTGCATTCCGCTTGTCTTCCCATCAGAGGAGAAAGCGGTACAAACAAC
GACAAGCTGTTCTCGATGTCGACAATCAATCAGTGCCTACGCGATCAATA
TGAACAGGGTCTGCAGTTGGGTTTGGATTTGACCAAAGCCGCCATCATTT
ATAGGGGGATACGTCATAGACGATCGTGTCATGGAAGGCGCATCTCTGAG
AATACATTCACCCAGAAGCTCCGCGTAGCGTATATTACCATTCCTAGGAC
GGCTCAACATTCAGCGAGGTGTGTGAAGAGAGAAGTTGTGTGCAACGATC
GGTTCCTTCGCCGACGCGTGCATTCCGCTTGTCTTCCCATCAGAGGAGAA
AGCGGTACAAACAACGACAAGCTGTTCTCG
back to top