mRNA_F-serratus_M_contig76.18880.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig76.18880.1 vs. uniprot
Match: D7FJE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE3_ECTSI) HSP 1 Score: 390 bits (1001), Expect = 7.480e-115 Identity = 297/834 (35.61%), Postives = 390/834 (46.76%), Query Frame = 2
Query: 2231 ANKERREWRYWHVHAAAMRYWTPCEVASWVSRLVAKAEVSRKLPLQIALPRDGNRSNILGTKDGGRAKEYSQKDKNKTAGGDSNNSSRPP---------AVAALPALASGSGDEVLVP-LDAVFGNARADGNCNGVERSSNGEKERRFSVVTGVKAIESEDEDDL----GREGKSASVYAEEKARRVAGNNSVKASSRDCSDRNPDDRNKTCREETKDGRDWTSLGTYKKKGFSGVATEALVLSSGMDGSCVIEAMDCALQEADDALTRFVRTSIRVPRPAEVEEKRVDLMMKELLAVRQFSTCSQLKMRVLCEDIVRGAKAPLKLTDEQITMQLPSLARVLVMGYRKQVAMAEQGLHLAAARLQALARGARARKLLASIWKQAKEYALNVVWVEREARMKMEADKRAKQKEEDLQREREQTRRYRLRLVPRVSSVTCTSMDISLPPFLVAAAHGVKRFLVFETTIEPSFLESPTSPPFHQEDNEETPEARAPAIHDDLYVGKPLRRSDTVKTYRGLRRINVGIREGSASEVHHQSTSVAMRPSCPASGTNPFAPANVTDSKNSAIMVDDFAIMDCAVGENPGDGGKTYVRAVGSTLRLAGLRPCTTYRLSLELTPVVRRYLLESARYYGLEEATLSLKAGSVDVGTKAESIGGSGEEHGLKVSISDCCGDIVAPTT--YFDVETLPDVPGVPLCLTCKVLVSVSAADPNKPGSVLSLGQWLSPYPAIKNIDGPSSADYLVLAPGRPQPIVSVCWSEPETNGLGIKSYVLERRIGSTGAWKTI------------GLPRAHRGMLNEAVDAPLRSVAVDALKRMAVEGLKLNYR 4648
AN+E REWR V AA M +WTP EVASW+S L+ KAE S KLPL + G +++ G G A E + + +S ++ P + P GS P D A C+GV + + S + GV + +D D G G + NS W + ++ G+SG A E + G++G C++EAM+ AL +DALTRF+++S R+ RPAEVE+KRV+LM++ELL +R +ST SQLK+R L IVR A+AP T+++I QLPSLARVL GYR+Q AM EQGL AAAR+Q LARG + R++++SIW+QA EYA ++V EREARMK E RRYRLRLVPR SSVTC SM +SLP FLVAAA G + +L L+ LRPCTTYRL+L + PV+R LLESAR G+ EA SL + T++E+ +G G +S GD+ A +T + DVETLPDVPG L CKVL S SA DP P VLSL +W SPYPAI N+DGP D++VLAPGRP+P+VS+ W PE NGL I SY +ERRIG TGAW+ + G + + + VDAPLR+++VD L+ +AV GL L+YR
Sbjct: 66 ANREAREWRGRRVRAAKMHHWTPVEVASWISHLLRKAETSGKLPLLFSGDAKGGTTSMGGDDTGPGAVENRVINPTEEDAQESGTAANPTPEEGGGVVDSSDTTPVKTEGSSSPAAAPPCDPAPSLADEVKKCSGVLADA------QDSSIAGVGQAQGDDNFDKNTDDGGHGDVNNXXXXXXXXXXXXENS--------------------------NNGWAEVEAGERTGYSGAAVEPFAVKEGINGCCIMEAMEDALGHTEDALTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLRALGVVIVRSAEAPRDPTNDEINAQLPSLARVLTAGYRRQAAMVEQGLEFAAARIQGLARGKKIRRVISSIWQQANEYARDIVQGEREARMKREXXXXXXXXXXXXXXXXXXARRYRLRLVPRASSVTCRSMVVSLPLFLVAAARGAR------------------------------------------------------------------------------------------------------------------------------------------SLSLSELRPCTTYRLALAIPPVIRNELLESARSLGVTEAIRSL-----ETPTESETKDNNGGSDG----VSGGDGDVGAASTSGHLDVETLPDVPGEVPLLKCKVLTSASAVDPRDPSGVLSLRRWQSPYPAIANMDGPVPEDFVVLAPGRPEPVVSLQWQGPENNGLDICSYTVERRIGRTGAWQKVRSRGGTWRRGDGGGEDGRQPLTFDEVDAPLRTISVDTLRAVAVNGLALSYR 720
BLAST of mRNA_F-serratus_M_contig76.18880.1 vs. uniprot
Match: A0A6H5LN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN38_9PHAE) HSP 1 Score: 314 bits (805), Expect = 6.590e-88 Identity = 233/632 (36.87%), Postives = 305/632 (48.26%), Query Frame = 2
Query: 2852 WTSLGTYKKKGFSGVATEALVLSSGMDGSCVIEAMDCALQEADDALTRFVRTSIRVPRPAEVEEKRVDLMMKELLAVRQFSTCSQLKMRVLCEDIVRGAKAPLKLTDEQITMQLPSLARVLVMGYRKQVAMAEQGLHLAAARLQALARGARARKLLASIWKQAKEYALNVVWVEREARMKMEADKRAKQKEEDLQREREQTRRYRLRLVPRVSSVTCTSMDISLPPFLVAAAHGVKRFLVFETTIEPSFLESPTSPPFHQEDNEETPEARAPAIHDDLYVGKPLRRSDTVKTYRGLRRINVGIREGSASEVHHQSTSVAMRPSCPASGTNPFAPANVTDSKNSAIMVDDFAIMDCAVGENPGDGGKTYVRAVGSTLRLAGLRPCTTYRLSLELTPVVRRYLLESARY----------YGLE----EATLSLKAGSVDVGTKAESIGGSGEEHGLKVSISDCC------GDIVAPTT-YFDVETLPDVPGVPLCLTCKVLVSVSAADPNKPGSVLSLGQWLSPYPAIKNIDGPSSADYLVLAPGRPQPIVSVCWSEPETNGLGIKSYVLERRIGSTGAWKTI----GLPRAHRG--------MLNEAVDAPLRSVAVDALKRMAVEGLKLNYR 4648
W + ++ G+SG A E + G++G C++EAM+ AL +DALTRF+++S R+ RPAEVE+KRV+LM++ELL +R +ST SQLK+R L IVR A+AP LT+++I QLP LARVL GYR+Q AM EQGL AAAR+Q LARG R++++SIW+QA EYA N+V EREARMK E +RAK+K G+ R T +T R G G A E Q G +T++ AVG++L L+ LRPCTTYRL+L + PV+R LLESAR +G E ++ +SL+ GS+ V S+ S E G+ T+ + DVETLPDVPG L CKVL S SA DP P VLSL +W SPYPAI N+DGP D++VLAPGRP+P+VS+ W PE NGL I RIG TGAW+ + G R G + + VDAPLR+++VD LK +AV GL L YR
Sbjct: 266 WAEVEAGERTGYSGAAVEPFAVKEGINGCCIMEAMEDALGHTEDALTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLRALGVVIVRSAEAPRDLTNDEINAQLPLLARVLTAGYRRQAAMVEQGLEFAAARIQGLARGKHIRRVMSSIWQQANEYARNIVQGEREARMKREKAQRAKEK------------------------------------------------------------------------------------------GRIFYRPRTTRTNVRKR---TGTGNGGAREEAFQ-------------------------------------------------GPRTFLHAVGTSLSLSELRPCTTYRLALAIPPVIRNELLESARCAVGTIVHWMCFGSEGEAGKSDVSLQ-GSLGVTEAIRSLETSTESKXXXXXXXXXXXXXXXXGEGAESTSGHLDVETLPDVPGEVPLLKCKVLTSASAVDPRDPSGVLSLRRWQSPYPAIANMDGPVPEDFVVLAPGRPEPVVSLQWQGPENNGLDIC------RIGRTGAWQKVRSRGGTGRRGDGGGEDGRQPLTFDEVDAPLRTISVDTLKEVAVNGLALVYR 748
BLAST of mRNA_F-serratus_M_contig76.18880.1 vs. uniprot
Match: A0A835YXH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.030e-13 Identity = 77/238 (32.35%), Postives = 105/238 (44.12%), Query Frame = 2
Query: 1307 QRELFRWTRQAAEALVNICKKSTSRRASGEDIGVVHVPRLSTRNAFLFPRQKQGVQAEGNDVLDIRVATFVGARVGEATCTQNGNGASFRDVMPPEWFRQNPTASVASPPSLSSSNSRTIQWHNGVDRE-PTDVWGMGTLVFELATGASAGPVPLALRPLRDLLRDVPIGPNFIYGDVARGVMRLALRRNPRDRAGAMYVATAVEDITTRALKRAHTAADRQLRLLRERRLRPAVDAD 2017
Q +L RWTRQA + ++ SR+ + G P L + A+L+PR G R +A G P Q AS + P + Q + GVD +WG+GTLV+ELATGA GP P+ PL +LR VP+GP F YGD R V+ L L R+PR + ++A AV ++ A A +L RER+ R V AD
Sbjct: 13 QADLLRWTRQAIAGV----RQLQSRQLLSTE-GPAQQPLLCSHTAYLYPRALTATTVAG------AAGXXXXVRASDAASLDLKLGLHVAAAPLP----QEAAASYGASP-FAVQLQLQQQQNGGVDAGLARALWGLGTLVYELATGAPLGPTPIWTVPLSAVLRSVPVGPYFKYGDCVRRVLALTLVRDPRLQPTVAHLADAVAELAATA------DAHERLAQERERQWREGVRAD 228 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig76.18880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig76.18880.1 >prot_F-serratus_M_contig76.18880.1 ID=prot_F-serratus_M_contig76.18880.1|Name=mRNA_F-serratus_M_contig76.18880.1|organism=Fucus serratus male|type=polypeptide|length=1494bp MCTVPSSTAANYPGIDEAAGGSTSNSTARELSSQNVLQLAVDDILGAHRPback to top mRNA from alignment at F-serratus_M_contig76:840475..880127+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig76.18880.1 ID=mRNA_F-serratus_M_contig76.18880.1|Name=mRNA_F-serratus_M_contig76.18880.1|organism=Fucus serratus male|type=mRNA|length=39653bp|location=Sequence derived from alignment at F-serratus_M_contig76:840475..880127+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig76:840475..880127+ >mRNA_F-serratus_M_contig76.18880.1 ID=mRNA_F-serratus_M_contig76.18880.1|Name=mRNA_F-serratus_M_contig76.18880.1|organism=Fucus serratus male|type=CDS|length=8964bp|location=Sequence derived from alignment at F-serratus_M_contig76:840475..880127+ (Fucus serratus male)back to top |