mRNA_F-serratus_M_contig1249.1885.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1249.1885.1
Unique NamemRNA_F-serratus_M_contig1249.1885.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: D7FZ56_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ56_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.630e-35
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM++A +PMAFRDSCAHLL+PLNKCRR TMYLPW+CSHERHIYEKCQYLDFKERK MMKE KE
Sbjct:   16 EMVAAKMPMAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKERKAMMKESKE 78
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BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: I1S5X9_GIBZE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=10 Tax=Fusarium TaxID=5506 RepID=I1S5X9_GIBZE)

HSP 1 Score: 95.9 bits (237), Expect = 3.030e-24
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM  A LP+A+RDSCAHLLIPLNKCRR T Y PW+CS ERH YEKCQY++FK+R   M E +E
Sbjct:   16 EMRDAKLPLAYRDSCAHLLIPLNKCRRDTWYAPWKCSDERHSYEKCQYVEFKKRVAKMDELRE 78
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BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: G9MJU7_HYPVG (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Hypocreales TaxID=5125 RepID=G9MJU7_HYPVG)

HSP 1 Score: 95.9 bits (237), Expect = 3.030e-24
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM  A LP+A+RDSCAHLLIPLNKCRR T Y PW+CS ERH YEKCQY++FK+R   M E +E
Sbjct:   16 EMRDARLPLAYRDSCAHLLIPLNKCRRETWYAPWKCSDERHSYEKCQYVEFKKRVAKMNELRE 78
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BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: A0A0W7VSI5_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Trichoderma TaxID=5543 RepID=A0A0W7VSI5_9HYPO)

HSP 1 Score: 94.7 bits (234), Expect = 8.680e-24
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM  A LP+A+RDSCAHLLIPLNKCRR T Y PW+C+ ERH YEKCQY++FK+R   M E +E
Sbjct:   16 EMRDAKLPLAYRDSCAHLLIPLNKCRRETWYAPWKCTDERHSYEKCQYVEFKKRVAKMNELRE 78
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BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: A0A8H4LWB4_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Ophiocordycipitaceae TaxID=474942 RepID=A0A8H4LWB4_9HYPO)

HSP 1 Score: 94.7 bits (234), Expect = 8.680e-24
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKE 225
            EM  A LP+A+RDSCAH+LIPLNKCRR T Y PW+C+ ERH YEKCQYL+FK+R   M E
Sbjct:   16 EMRDARLPLAYRDSCAHILIPLNKCRRATWYAPWKCTDERHSYEKCQYLEFKKRVAKMDE 75
[Close]
BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: A0A2S4KNM0_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=75 Tax=Hypocreales TaxID=5125 RepID=A0A2S4KNM0_9HYPO)

HSP 1 Score: 94.4 bits (233), Expect = 1.230e-23
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM  A LPMA+RDSCAHLLIPLNKCRR T Y PW+C  ERH YEKCQY++FK+R   M E +E
Sbjct:   16 EMRDARLPMAYRDSCAHLLIPLNKCRRETWYAPWKCGDERHGYEKCQYVEFKKRVAKMDELRE 78
[Close]
BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: E9DYY1_METAQ (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=16 Tax=Clavicipitaceae TaxID=34397 RepID=E9DYY1_METAQ)

HSP 1 Score: 94.4 bits (233), Expect = 1.230e-23
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM  A LP+A+RDSCAHLLIPLNKCR+ T Y PW+CS ERH YEKCQY++FK+R   M E +E
Sbjct:   16 EMRDARLPLAYRDSCAHLLIPLNKCRKETWYAPWKCSDERHSYEKCQYVEFKKRVAKMDELRE 78
[Close]
BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: G9PC87_HYPAI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Hypocreaceae TaxID=5129 RepID=G9PC87_HYPAI)

HSP 1 Score: 93.2 bits (230), Expect = 2.280e-23
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   49 MISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            M  A LP+A+RDSCAHLLIPLNKCRR T Y PW+C+ ERH YEKCQY++FK+R   M E +E
Sbjct:    1 MSDAKLPLAYRDSCAHLLIPLNKCRRETWYAPWKCTDERHSYEKCQYVEFKKRVAKMNELRE 62
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BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: B2AC18_PODAN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Podospora TaxID=5144 RepID=B2AC18_PODAN)

HSP 1 Score: 93.6 bits (231), Expect = 2.550e-23
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKEKKE 234
            EM  A LPMA+RDSC HLLIPLN+CR+ T YLPW+C+ ERH YEKCQY++FK+R   M E +E
Sbjct:   17 EMRDAKLPMAYRDSCGHLLIPLNRCRQDTYYLPWKCNDERHSYEKCQYVEFKKRVAKMDELRE 79
[Close]
BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Match: L2FDD7_COLFN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=4 Tax=Colletotrichum gloeosporioides species complex TaxID=2707338 RepID=L2FDD7_COLFN)

HSP 1 Score: 93.2 bits (230), Expect = 3.250e-23
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:   46 EMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWECSHERHIYEKCQYLDFKERKGMMKE 225
            EM  A LP+A+RDSCAHLLIPLN+CR  T YLPW+C+ ERH YEKCQY++FK+R   M E
Sbjct:   14 EMRDAKLPLAYRDSCAHLLIPLNRCRTDTFYLPWKCNDERHSYEKCQYVEFKKRVAKMNE 73
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1249.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ56_ECTSI2.630e-3585.71NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
I1S5X9_GIBZE3.030e-2468.25NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G9MJU7_HYPVG3.030e-2468.25NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0W7VSI5_9HYPO8.680e-2466.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A8H4LWB4_9HYPO8.680e-2468.33NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A2S4KNM0_9HYPO1.230e-2368.25NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
E9DYY1_METAQ1.230e-2366.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G9PC87_HYPAI2.280e-2366.13NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
B2AC18_PODAN2.550e-2365.08NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
L2FDD7_COLFN3.250e-2366.67NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1249contigF-serratus_M_contig1249:144159..145313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D7FZ56
Preferred nameNDUFB7
KEGG koko:K03963,ko:K04498
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04714,ko04720,ko04723,ko04916,ko04919,ko04922,ko04932,ko05010,ko05012,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map00190,map01100,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04714,map04720,map04723,map04916,map04919,map04922,map04932,map05010,map05012,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG ModuleM00147
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (quinone) activity
EggNOG OGsKOG3468@1,KOG3468@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03036
Exons2
Model size245
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.3291283-CDS-F-serratus_M_contig1249:144158..1442071622929176.3291283-CDS-F-serratus_M_contig1249:144158..144207Fucus serratus maleCDSF-serratus_M_contig1249 144159..144207 -
1690962737.7020266-CDS-F-serratus_M_contig1249:144158..1442071690962737.7020266-CDS-F-serratus_M_contig1249:144158..144207Fucus serratus maleCDSF-serratus_M_contig1249 144159..144207 -
1622929176.339579-CDS-F-serratus_M_contig1249:145119..1453131622929176.339579-CDS-F-serratus_M_contig1249:145119..145313Fucus serratus maleCDSF-serratus_M_contig1249 145120..145313 -
1690962737.7160544-CDS-F-serratus_M_contig1249:145119..1453131690962737.7160544-CDS-F-serratus_M_contig1249:145119..145313Fucus serratus maleCDSF-serratus_M_contig1249 145120..145313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1249.1885.1prot_F-serratus_M_contig1249.1885.1Fucus serratus malepolypeptideF-serratus_M_contig1249 144159..145313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1249.1885.1

>prot_F-serratus_M_contig1249.1885.1 ID=prot_F-serratus_M_contig1249.1885.1|Name=mRNA_F-serratus_M_contig1249.1885.1|organism=Fucus serratus male|type=polypeptide|length=81bp
GRRSRPRNGGQGDGGEMISAGLPMAFRDSCAHLLIPLNKCRRGTMYLPWE
CSHERHIYEKCQYLDFKERKGMMKEKKEES*
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mRNA from alignment at F-serratus_M_contig1249:144159..145313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1249.1885.1 ID=mRNA_F-serratus_M_contig1249.1885.1|Name=mRNA_F-serratus_M_contig1249.1885.1|organism=Fucus serratus male|type=mRNA|length=1155bp|location=Sequence derived from alignment at F-serratus_M_contig1249:144159..145313- (Fucus serratus male)
GGGCGGCGGTCACGACCACGGAATGGAGGGCAAGGCGACGGAGGAGAGAT
GATCTCGGCAGGTCTGCCCATGGCCTTCCGCGACTCTTGCGCGCACCTTC
TCATCCCGCTCAACAAGTGCCGAAGGGGTACGATGTACCTACCATGGGAG
TGCTCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCTTGAGTGAGT
GGCCGAATGTGCCCCAGACTGCGTTCGCTTCACGCACCCAGCAACGCCAC
ATATCTTGTCATGTTTCCCAACGAGTTCAACGATGGCTGTCGCTCTCATG
ACTGGGGTTATTCCTTCGTAAACTGTAGTTGTAGCGCCATTTGTTCGCGC
CATCGACGGTTTATCAACACTTGATGGCCATGTACTAGTATGAAGATATA
TTTTTCTGAGATATGTGACGCTCGCGAGCATACTGTATGGGTCACACATA
TAGCAAGAGTATGGATCAACCGGGTAAGGTTGCCAGTCCTGCACGTGGTC
AGCTGAACAAGAAAAATGAATATTTCCCTGTGCGCGTTCGTGCCTAAGAA
CTTGGTCTCGCGAGACGGGTTTGGCAGTCCCGTCCCGCGTCAACCTGCTC
ATTTCCGTACTCAGGCTGAACCTGGTGCTTACTTACGGGATTCCTCCCGA
GTTCCGCGGCGGCGTCCATTTATTCATGTATAACCGCCATACGCCATCGG
GTCAGTCCCGAGTTTATCGTGTCACGCCATTACGTACCGATGGCGTCCAC
TGCCGAGAGTCCGCCGGCACAGGGCCAATAAACCTTAAAGGTAGTTCCGA
ACGAGTTCTGCCTTTGCAGGTCACCATGGACTATGACCAATTAATATTCG
CCTCTCTTACCCACACCCACTATTGGTATGAAGTGGGCATGTTGAAAGTA
CCGTCTATCCACCACCGATGCGTTGGAGCCATTGGAGTCATTGCATGGAT
CATCGAACGAGTCTTTTTCTTTGCTATTGCCTCGTCTCGCCAGTAAATAT
TTTCAAACTTCGTAAGACTGTATAAAATGTGACGTTTTTGATTCGCTACC
GCCTATTAACGAACGAAATCATGCCCTCCTCGCCGTGCCTACGGTCGCCG
TTACAGTTTCAAGGAACGGAAGGGGATGATGAAGGAGAAAAAGGAAGAAT
CGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1249:144159..145313-

>mRNA_F-serratus_M_contig1249.1885.1 ID=mRNA_F-serratus_M_contig1249.1885.1|Name=mRNA_F-serratus_M_contig1249.1885.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig1249:144159..145313- (Fucus serratus male)
GGGCGGCGGTCACGACCACGGAATGGAGGGCAAGGCGACGGAGGAGAGAT
GATCTCGGCAGGTCTGCCCATGGCCTTCCGCGACTCTTGCGCGCACCTTC
TCATCCCGCTCAACAAGTGCCGAAGGGGTACGATGTACCTACCATGGGAG
TGCTCGCACGAGCGCCACATCTACGAGAAGTGCCAGTACCTTGAGGGCGG
CGGTCACGACCACGGAATGGAGGGCAAGGCGACGGAGGAGAGATGATCTC
GGCAGGTCTGCCCATGGCCTTCCGCGACTCTTGCGCGCACCTTCTCATCC
CGCTCAACAAGTGCCGAAGGGGTACGATGTACCTACCATGGGAGTGCTCG
CACGAGCGCCACATCTACGAGAAGTGCCAGTACCTTGATTTCAAGGAACG
GAAGGGGATGATGAAGGAGAAAAAGGAAGAATCGTGATTTCAAGGAACGG
AAGGGGATGATGAAGGAGAAAAAGGAAGAATCGTGA
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