mRNA_F-serratus_M_contig1249.1884.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1249.1884.1
Unique NamemRNA_F-serratus_M_contig1249.1884.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: D7FZ57_ECTSI (Plastid-lipid associated protein PAP / fibrillin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ57_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.180e-66
Identity = 99/123 (80.49%), Postives = 114/123 (92.68%), Query Frame = 1
Query:    1 ESLSALWILEWTTEREILFLMKNGLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPE-SGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKSK 366
            ESLSA WILEWTTEREI+FLM+ GLPG+PSGPV+Q+IDVDA+TLSN M+FG DSLFEVAS+IDPE SGPRVNFEF+ACK KYGG  +PLPPVG+GWFESVYLD+DLRVTRD+RGDV+VLVK +
Sbjct:  143 ESLSARWILEWTTEREIIFLMERGLPGKPSGPVEQDIDVDARTLSNRMIFGDDSLFEVASSIDPEDSGPRVNFEFEACKLKYGGFTIPLPPVGKGWFESVYLDQDLRVTRDVRGDVTVLVKGQ 265          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A833RJB5_9POAL (Putative plastid-lipid-associated protein 11 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RJB5_9POAL)

HSP 1 Score: 124 bits (310), Expect = 4.720e-33
Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1
Query:    1 ESLSALWILEWTTEREILFLMKN-GLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
            +SLSA W + WTTE+E LF++KN GL G  +G V Q IDV+ K L+N++ F    +F V STI+ E   RVNF+F +   +    ++PLPP GQGWFESVYLD+D+RV +DIRGD  V+ ++
Sbjct:   86 KSLSATWRMLWTTEKEQLFIVKNAGLFGTEAGDVLQVIDVENKRLNNVITFPPSGVFFVRSTIETEPPQRVNFKFTSAVLRGSSWEIPLPPFGQGWFESVYLDDDIRVAKDIRGDYLVVERA 207          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A835YUD2_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 4.000e-31
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    7 LSALWILEWTTEREILFLMKNGLPGQPSGPVKQEIDVDAKTLSNIMVFGK-------DSLFEVASTIDPE-SGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVK 360
            L+  W+L+WT E+E  FL+K+GL G  +G V Q ID   + LSN ++FG           F+V ST  PE SG RVNFEF +C  ++    VPLPPVG+GWF SVYLDE +R+T D RGD  +  +
Sbjct:  112 LNGKWVLQWTDEKETAFLLKSGLFGLKTGEVSQTIDTKQQVLSNAVLFGTGDDVASAQGTFQVGSTAIPETSGARVNFEFLSCSIRWKKFTVPLPPVGKGWFASVYLDESMRITTDSRGDRQIFTR 237          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: U5FPZ5_POPTR (PAP_fibrillin domain-containing protein n=8 Tax=Saliceae TaxID=238069 RepID=U5FPZ5_POPTR)

HSP 1 Score: 119 bits (297), Expect = 4.050e-31
Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 ESLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
            +SLSA W L WTTE+E LF+++   L G  +G V Q IDV+ +TL+N++ F  D +F V S+I+  S  RVNF F +   +    ++PLPP GQGWFES+Y+DE++RV +DIRGD  V+ K+
Sbjct:   84 DSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVIDVEKRTLNNVITFPPDGVFFVRSSIEVSSSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFESLYIDEEIRVVKDIRGDYLVVDKA 205          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A067JY60_JATCU (PAP_fibrillin domain-containing protein n=3 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JY60_JATCU)

HSP 1 Score: 119 bits (297), Expect = 4.270e-31
Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    4 SLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKSKN 369
            SLSA W L WTTE+E LF+++   L G  +G V Q IDV+ KTL+N++ F  D +F V S I+  S  RVNF F +   +    ++PLPP GQGWF+SVYLD DLRV +DIRGD  V+  S +
Sbjct:   87 SLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVIDVEKKTLNNVITFPPDGVFFVRSNIEIASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFQSVYLDGDLRVAKDIRGDYLVVAHSSD 209          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: UPI000C873454 (probable plastid-lipid-associated protein 11, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C873454)

HSP 1 Score: 119 bits (298), Expect = 4.300e-31
Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    4 SLSALWILEWTTEREILFLMKN-GLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVL 354
            +LSA W + WTTE+E LF++KN GL G  +G V Q IDV    L+N++ F  D +F V S+IDP    RVNF+F +   +    ++PLPP GQGWFESVY+D+++RV +DIRGD  V+
Sbjct:  101 ALSATWRMLWTTEKEQLFIIKNAGLFGTAAGDVLQVIDVGNGVLNNVITFPPDGVFFVRSSIDPAPPQRVNFKFTSAVLRGSNWEIPLPPFGQGWFESVYMDDEIRVAKDIRGDYLVV 218          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A830B0F5_9LAMI (Probable plastid-lipid-associated protein 11 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B0F5_9LAMI)

HSP 1 Score: 118 bits (296), Expect = 6.350e-31
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 ESLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
            ESLSA W + WTTE+E LF++KN  + G  +G V Q IDVD KTL+N++ F  D +F V S I   S  RVNF F +   +  G + PLPP GQGWFES+Y+D+++RV +DIR D  ++ ++
Sbjct:   88 ESLSATWRMLWTTEKEQLFIIKNAPIFGTSAGDVLQVIDVDQKTLNNVITFPPDGVFFVRSEIQVASAQRVNFRFTSAVLRGKGWEFPLPPFGQGWFESLYIDDEIRVVKDIRQDYLIVERA 209          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A3Q7IE21_SOLLC (PAP_fibrillin domain-containing protein n=4 Tax=Solanum TaxID=4107 RepID=A0A3Q7IE21_SOLLC)

HSP 1 Score: 118 bits (295), Expect = 7.120e-31
Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 1
Query:    4 SLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
            SLSA W L WTTE+E LF++KN    G  +G V Q IDV+ KTL+N++ F  D +F V STI+  S  RVNF F +   +    + PLPP GQGWFE+VYLD+D+RV +DIR D  ++ ++
Sbjct:   80 SLSATWRLLWTTEKEQLFIIKNASFFGTKAGDVLQVIDVEKKTLNNVITFPPDGVFFVRSTIEVASSQRVNFRFTSAVLRGKNWEFPLPPFGQGWFETVYLDDDIRVVKDIRQDYLIVERA 200          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A251LVN5_MANES (PAP_fibrillin domain-containing protein n=5 Tax=Manihot esculenta TaxID=3983 RepID=A0A251LVN5_MANES)

HSP 1 Score: 118 bits (295), Expect = 8.320e-31
Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    4 SLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVL 354
            SLSA W L WTTE+E LF+++   L G  +G V Q IDV+ KTL+N++ F  D +F V S I+  S  RVNF F +   +    ++PLPP GQGWFESVY+D+D+RV +DIRGD  V+
Sbjct:   86 SLSATWRLLWTTEKEQLFIIEKAPLFGTKAGDVLQVIDVEKKTLNNVITFPPDRVFFVRSNIEIASSQRVNFRFTSAVLRGKSWEIPLPPFGQGWFESVYIDDDIRVVKDIRGDYLVV 203          
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A251UGL2_HELAN (Putative plastid-lipid associated protein PAP / fibrillin family protein n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UGL2_HELAN)

HSP 1 Score: 117 bits (293), Expect = 1.540e-30
Identity = 58/118 (49.15%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    4 SLSALWILEWTTEREILFLMKN-GLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVL 354
            SLS  W L WTTE+E LF+++N G  G  +G V Q IDV+ ++L+N++ F  D +F V S ++  S  RVNF F +   +  G + PLPP GQGWFESVYLDE++R+ +DIRGD  V+
Sbjct:   92 SLSGTWRLLWTTEKEQLFIVENAGFFGTKAGDVLQVIDVEKRSLNNVITFPPDGVFFVRSDVEIASSQRVNFRFTSAVLRGKGWEFPLPPFGQGWFESVYLDEEIRIVKDIRGDYLVV 209          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ57_ECTSI4.180e-6680.49Plastid-lipid associated protein PAP / fibrillin f... [more]
A0A833RJB5_9POAL4.720e-3350.82Putative plastid-lipid-associated protein 11 n=1 T... [more]
A0A835YUD2_9STRA4.000e-3147.62PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
U5FPZ5_POPTR4.050e-3148.36PAP_fibrillin domain-containing protein n=8 Tax=Sa... [more]
A0A067JY60_JATCU4.270e-3150.41PAP_fibrillin domain-containing protein n=3 Tax=Ja... [more]
UPI000C8734544.300e-3150.00probable plastid-lipid-associated protein 11, chlo... [more]
A0A830B0F5_9LAMI6.350e-3148.36Probable plastid-lipid-associated protein 11 n=1 T... [more]
A0A3Q7IE21_SOLLC7.120e-3149.59PAP_fibrillin domain-containing protein n=4 Tax=So... [more]
A0A251LVN5_MANES8.320e-3150.85PAP_fibrillin domain-containing protein n=5 Tax=Ma... [more]
A0A251UGL2_HELAN1.540e-3049.15Putative plastid-lipid associated protein PAP / fi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1249contigF-serratus_M_contig1249:142156..143185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.1
Seed ortholog evalue3e-52
Seed eggNOG ortholog2880.D7FZ57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PAP_fibrillin
EggNOG OGs2CNCY@1,2QVAR@2759
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-02_006360.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1249.1884.1prot_F-serratus_M_contig1249.1884.1Fucus serratus malepolypeptideF-serratus_M_contig1249 142156..143185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929176.2537186-CDS-F-serratus_M_contig1249:142155..1423501622929176.2537186-CDS-F-serratus_M_contig1249:142155..142350Fucus serratus maleCDSF-serratus_M_contig1249 142156..142350 +
1690962737.6667125-CDS-F-serratus_M_contig1249:142155..1423501690962737.6667125-CDS-F-serratus_M_contig1249:142155..142350Fucus serratus maleCDSF-serratus_M_contig1249 142156..142350 +
1622929176.2736628-CDS-F-serratus_M_contig1249:142578..1426621622929176.2736628-CDS-F-serratus_M_contig1249:142578..142662Fucus serratus maleCDSF-serratus_M_contig1249 142579..142662 +
1690962737.6792853-CDS-F-serratus_M_contig1249:142578..1426621690962737.6792853-CDS-F-serratus_M_contig1249:142578..142662Fucus serratus maleCDSF-serratus_M_contig1249 142579..142662 +
1622929176.2893949-CDS-F-serratus_M_contig1249:143092..1431851622929176.2893949-CDS-F-serratus_M_contig1249:143092..143185Fucus serratus maleCDSF-serratus_M_contig1249 143093..143185 +
1690962737.6893625-CDS-F-serratus_M_contig1249:143092..1431851690962737.6893625-CDS-F-serratus_M_contig1249:143092..143185Fucus serratus maleCDSF-serratus_M_contig1249 143093..143185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1249.1884.1

>prot_F-serratus_M_contig1249.1884.1 ID=prot_F-serratus_M_contig1249.1884.1|Name=mRNA_F-serratus_M_contig1249.1884.1|organism=Fucus serratus male|type=polypeptide|length=124bp
ESLSALWILEWTTEREILFLMKNGLPGQPSGPVKQEIDVDAKTLSNIMVF
GKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVY
LDEDLRVTRDIRGDVSVLVKSKN*
back to top

mRNA from alignment at F-serratus_M_contig1249:142156..143185+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1249.1884.1 ID=mRNA_F-serratus_M_contig1249.1884.1|Name=mRNA_F-serratus_M_contig1249.1884.1|organism=Fucus serratus male|type=mRNA|length=1030bp|location=Sequence derived from alignment at F-serratus_M_contig1249:142156..143185+ (Fucus serratus male)
GAGAGCCTCAGCGCGCTTTGGATCTTGGAGTGGACGACTGAACGAGAGAT ATTGTTCTTGATGAAAAACGGCTTGCCAGGACAGCCCTCCGGTCCCGTCA AGCAAGAAATTGATGTGGACGCCAAGACGCTGTCCAATATAATGGTCTTT GGGAAGGATTCCCTGTTTGAGGTGGCGTCAACGATCGATCCAGAGGTAAG TCACGATCACACAAGCTGCATGTACAACGTCTGTCGCTCGACTCTTGTCT CGTCGTTTTCCCAAAGTAGACCGCCTCGTCTCTTGATGAACATCGCAAGA CGCTGCAAAAGTGGTTTAGCTCTCGCCTCACTGCCCTACGAATTCGCAGT CATAGCGGTTGAAGTCTCGCGCTCGAAACCTGAGCGCCGAGTGATATCCC CTATCTGGCCCGTCTTCCAGGAGTCAGGACCTCGCGTGAATTTCGAGTTC AAGGCGTGTAAGTTCAAGTATGGAGGTATCCAAGTACCTTTGCCGCCGGT GGGCCAGGTGAGTTCTCAGGCCGGTGGAACCGCCAGTATTTTCCCGTCCT TCAGACGATAATAGCTTAACGGTAACGGCTTCAATCTGAAAGAGCCTTCG CACAGTACGCCACACCGTCTCGGGTGCCGGTTATCGAAGCATGCGATACC GTTTTTTAAAATCGAAAAACAAGGTTCACGTACGTATGTACCAGGCATGT GTAGCTCCTGTTCAGCGTAGCCGAGGAAACCCAGTCATGGCACATTTCAA TCGCCCTAGAGTAAACAGACGCGGCTGACAAACTGGTGATCATTTCTTCG CTACACGTAGGTGTATAGTCAATGGGTACAATACAACGCGGTGCCGTATC CCTCCCCCCCCCAAAAAAAATGGCCGCATTCCATTTTTCTGCTGCCGCAT TGTCTATCCCAAATGCTGCGCTCGCTGCGTTGTTTAGGGCTGGTTCGAGA GCGTGTACCTCGACGAAGATTTAAGAGTTACGAGGGACATTCGGGGCGAT GTTTCTGTACTCGTGAAGAGCAAGAACTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1249:142156..143185+

>mRNA_F-serratus_M_contig1249.1884.1 ID=mRNA_F-serratus_M_contig1249.1884.1|Name=mRNA_F-serratus_M_contig1249.1884.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig1249:142156..143185+ (Fucus serratus male)
GAGAGCCTCAGCGCGCTTTGGATCTTGGAGTGGACGACTGAACGAGAGAT
ATTGTTCTTGATGAAAAACGGCTTGCCAGGACAGCCCTCCGGTCCCGTCA
AGCAAGAAATTGATGTGGACGCCAAGACGCTGTCCAATATAATGGTCTTT
GGGAAGGATTCCCTGTTTGAGGTGGCGTCAACGATCGATCCAGAGGAGAG
CCTCAGCGCGCTTTGGATCTTGGAGTGGACGACTGAACGAGAGATATTGT
TCTTGATGAAAAACGGCTTGCCAGGACAGCCCTCCGGTCCCGTCAAGCAA
GAAATTGATGTGGACGCCAAGACGCTGTCCAATATAATGGTCTTTGGGAA
GGATTCCCTGTTTGAGGTGGCGTCAACGATCGATCCAGAGTCAGGACCTC
GCGTGAATTTCGAGTTCAAGGCGTGTAAGTTCAAGTATGGAGGTATCCAA
GTACCTTTGCCGCCGGTGGGCCAGTCAGGACCTCGCGTGAATTTCGAGTT
CAAGGCGTGTAAGTTCAAGTATGGAGGTATCCAAGTACCTTTGCCGCCGG
TGGGCCAGGGCTGGTTCGAGAGCGTGTACCTCGACGAAGATTTAAGAGTT
ACGAGGGACATTCGGGGCGATGTTTCTGTACTCGTGAAGAGCAAGAACTG
AGGCTGGTTCGAGAGCGTGTACCTCGACGAAGATTTAAGAGTTACGAGGG
ACATTCGGGGCGATGTTTCTGTACTCGTGAAGAGCAAGAACTGA
back to top