mRNA_F-serratus_M_contig76.18857.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig76.18857.1
Unique NamemRNA_F-serratus_M_contig76.18857.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig76.18857.1 vs. uniprot
Match: D8LLV8_ECTSI (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV8_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.350e-7
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:  136 DRERAQLLLLTRMYMQDQSAIEELQDFWTLDSKWTEFFLPQ 258
            D E A LLLL RM+ Q+Q+AIEEL D W  D KWT FFLPQ
Sbjct:  209 DAEGAPLLLLARMFAQEQAAIEELGDMWVRDPKWTGFFLPQ 249
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BLAST of mRNA_F-serratus_M_contig76.18857.1 vs. uniprot
Match: A0A6H5JBM1_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 5.250e-6
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  148 AQLLLLTRMYMQDQSAIEELQDFWTLDSKWTEFFLPQ 258
            A LLLL RM+ Q+Q+AIEEL D W  D KWT FFLPQ
Sbjct:  200 APLLLLARMFAQEQAAIEELGDMWVRDPKWTGFFLPQ 236
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig76.18857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLV8_ECTSI4.350e-765.85PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
A0A6H5JBM1_9PHAE5.250e-667.57PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig76contigF-serratus_M_contig76:168735..169073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932282.0029309-CDS-F-serratus_M_contig76:168734..1690731622932282.0029309-CDS-F-serratus_M_contig76:168734..169073Fucus serratus maleCDSF-serratus_M_contig76 168735..169073 +
1690964233.302537-CDS-F-serratus_M_contig76:168734..1690731690964233.302537-CDS-F-serratus_M_contig76:168734..169073Fucus serratus maleCDSF-serratus_M_contig76 168735..169073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig76.18857.1prot_F-serratus_M_contig76.18857.1Fucus serratus malepolypeptideF-serratus_M_contig76 168735..169073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig76.18857.1

>prot_F-serratus_M_contig76.18857.1 ID=prot_F-serratus_M_contig76.18857.1|Name=mRNA_F-serratus_M_contig76.18857.1|organism=Fucus serratus male|type=polypeptide|length=113bp
AFLIGLESQSGETQGRVGLKAGGAEGKILASELETADCGGVMGGADRERA
QLLLLTRMYMQDQSAIEELQDFWTLDSKWTEFFLPQMGVRWAHCLCSVLH
AVEFVRTVRRPP*
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mRNA from alignment at F-serratus_M_contig76:168735..169073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig76.18857.1 ID=mRNA_F-serratus_M_contig76.18857.1|Name=mRNA_F-serratus_M_contig76.18857.1|organism=Fucus serratus male|type=mRNA|length=339bp|location=Sequence derived from alignment at F-serratus_M_contig76:168735..169073+ (Fucus serratus male)
GCGTTTCTTATCGGACTGGAATCACAAAGTGGAGAAACTCAGGGGAGAGT
GGGACTCAAAGCTGGAGGAGCTGAAGGAAAAATTCTGGCATCGGAGCTTG
AGACGGCGGATTGCGGCGGGGTCATGGGAGGCGCGGACAGGGAAAGAGCA
CAGCTACTGCTGCTTACGCGCATGTACATGCAAGATCAGTCGGCAATCGA
AGAGCTGCAAGACTTTTGGACACTTGATTCGAAGTGGACGGAGTTTTTCT
TGCCCCAGATGGGGGTACGGTGGGCGCACTGCCTGTGCTCCGTCCTCCAT
GCTGTAGAGTTCGTACGCACTGTCCGGCGTCCACCCTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig76:168735..169073+

>mRNA_F-serratus_M_contig76.18857.1 ID=mRNA_F-serratus_M_contig76.18857.1|Name=mRNA_F-serratus_M_contig76.18857.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig76:168735..169073+ (Fucus serratus male)
GCGTTTCTTATCGGACTGGAATCACAAAGTGGAGAAACTCAGGGGAGAGT
GGGACTCAAAGCTGGAGGAGCTGAAGGAAAAATTCTGGCATCGGAGCTTG
AGACGGCGGATTGCGGCGGGGTCATGGGAGGCGCGGACAGGGAAAGAGCA
CAGCTACTGCTGCTTACGCGCATGTACATGCAAGATCAGTCGGCAATCGA
AGAGCTGCAAGACTTTTGGACACTTGATTCGAAGTGGACGGAGTTTTTCT
TGCCCCAGATGGGGGTACGGTGGGCGCACTGCCTGTGCTCCGTCCTCCAT
GCTGTAGAGTTCGTACGCACTGTCCGGCGTCCACCCTAAGCGTTTCTTAT
CGGACTGGAATCACAAAGTGGAGAAACTCAGGGGAGAGTGGGACTCAAAG
CTGGAGGAGCTGAAGGAAAAATTCTGGCATCGGAGCTTGAGACGGCGGAT
TGCGGCGGGGTCATGGGAGGCGCGGACAGGGAAAGAGCACAGCTACTGCT
GCTTACGCGCATGTACATGCAAGATCAGTCGGCAATCGAAGAGCTGCAAG
ACTTTTGGACACTTGATTCGAAGTGGACGGAGTTTTTCTTGCCCCAGATG
GGGGTACGGTGGGCGCACTGCCTGTGCTCCGTCCTCCATGCTGTAGAGTT
CGTACGCACTGTCCGGCGTCCACCCTAA
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