mRNA_F-serratus_M_contig76.18852.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig76.18852.1
Unique NamemRNA_F-serratus_M_contig76.18852.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig76.18852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig76contigF-serratus_M_contig76:117120..118708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932281.6216817-CDS-F-serratus_M_contig76:117120..1174091622932281.6216817-CDS-F-serratus_M_contig76:117120..117409Fucus serratus maleCDSF-serratus_M_contig76 117121..117409 -
1690964233.1601164-CDS-F-serratus_M_contig76:117120..1174091690964233.1601164-CDS-F-serratus_M_contig76:117120..117409Fucus serratus maleCDSF-serratus_M_contig76 117121..117409 -
1622932281.6442766-CDS-F-serratus_M_contig76:118595..1187081622932281.6442766-CDS-F-serratus_M_contig76:118595..118708Fucus serratus maleCDSF-serratus_M_contig76 118596..118708 -
1690964233.1751916-CDS-F-serratus_M_contig76:118595..1187081690964233.1751916-CDS-F-serratus_M_contig76:118595..118708Fucus serratus maleCDSF-serratus_M_contig76 118596..118708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig76.18852.1prot_F-serratus_M_contig76.18852.1Fucus serratus malepolypeptideF-serratus_M_contig76 117121..118708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig76.18852.1

>prot_F-serratus_M_contig76.18852.1 ID=prot_F-serratus_M_contig76.18852.1|Name=mRNA_F-serratus_M_contig76.18852.1|organism=Fucus serratus male|type=polypeptide|length=134bp
RFRPKYPSILPGLSSIAVETVPPSSRERDMPTKSAIRWTPLLHDDPEGRQ
GATYFDDALCPGVALPRHSAGDAHPLSLPRVKQRARRATVVSSAPRRRSS
STMDGGAVSRSTSESEIGVTRSVGNGGLLAKPEL
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mRNA from alignment at F-serratus_M_contig76:117120..118708-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig76.18852.1 ID=mRNA_F-serratus_M_contig76.18852.1|Name=mRNA_F-serratus_M_contig76.18852.1|organism=Fucus serratus male|type=mRNA|length=1589bp|location=Sequence derived from alignment at F-serratus_M_contig76:117120..118708- (Fucus serratus male)
CGCTTTCGCCCTAAATACCCGTCGATATTGCCTGGGTTGTCCTCAATTGC
CGTAGAAACCGTGCCTCCATCATCACGAGAGAGAGACATGCCCACGAAGA
GCGCAATACGCTGGTGAGACACTATTGAAGTCTTTGTAAATCAAATTCCA
ACACGAGCAGGATGTGTTTACGCCGCCGGCAGAAAAAAATAAGTGACCAC
AAGACAGCAGTATCGATCACAGTAGTTATTTTGATGTTACGACACAAGGC
TCTCTCAGGCAGGGAATGCGCCACAAACTGGTTGCGCCATCCGGTTCAGC
GATTCACTCACGTCTTATATGGTGGAGGAGGGCCTCGTTGCTGGCTGATC
AAACTGTCGTCGTATTTCCAGAGAGTCGAACGCATCCATCATGAATCGAA
CGACTGTGATTTTCACATTTATCCTTCAGTTCTATACAAACAGTAGTAGC
TCTATTAAATACAATACTCGTATTGTTTCGTAGAAGTGCCGAGTTCGAAT
CTCAAAGAAAAAACAGTGATTGGCGTGCAGGATTTGTGCGATTTGTGACG
GCGGAAAACGTCGTATGGCCGTTAGTGAAGAAAATCTATTCCTAAGAAGC
CTATATGACGGGGTGTATGTACTAAATAGTTCAAGTAGCTCCAGGGGTGC
TGGGAGTGTACCTGGTACAAGGACGATGAAAAAGCGTGGGCCTGAGCGCG
GTAGCGATGGTTCGATCACAGGCGGGGTAGCTTTTGCGGGTTTGCTTCCT
CACTGCTGGAGGTGGATTGTACTTGTATCAAAATGCCACTTTTGCGGCGC
TGCCGGTACAGCAACGTTCCCCCTCCTGAGGTTTTCACTAACCGTTGCGG
TAGATAGGACTCACATAACAGCAATCAGCAGCTCAAGCCCAATCGCCCGC
CCGATTGCCTCATTAACATCAAGCAAGAAGGCGTGCTAAGAACACGGCTA
CCTCCAAGTACAAAAAAGAAGGTCTAGGCGCGTTCTGATTTTTCTTTAAA
CTAGTACTCTCAAGTCTATTCTCCCATACTTGAAACTTTAGTGTAGAGCC
CTAGAAATGCAAATCGACAGCTTCACCTCTAGGACTAGTAAATCCTATTT
ATTATTAATAGTAGTCACACTGACTGCTGATACTATCTAATCATAGAACG
TCGTGAATAATAGTCTTATCAATAGCTCTATATACTCCCAGATAGATTTG
TTGCTGGTCTCTCGAACCTGGCTCAAGTATTTCGTTACTCTCATCAACCT
TTTCCACCCCTGCTGCTGCGGCCACGCTTATCACGACAATCATGCATAGG
ACGCCGCTCCTGCACGATGATCCCGAAGGGCGACAAGGAGCAACATACTT
CGACGATGCCCTGTGCCCAGGCGTAGCCCTGCCCCGCCACAGCGCGGGCG
ATGCTCACCCGCTTTCGCTTCCCCGCGTAAAACAGCGCGCTCGCCGAGCT
ACGGTCGTGAGTAGCGCGCCCAGGAGGCGGAGTAGCTCGACGATGGATGG
CGGCGCCGTCAGCAGAAGCACCAGCGAATCGGAAATTGGTGTCACGCGCA
GCGTCGGCAATGGTGGTTTGCTTGCGAAACCAGAACTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig76:117120..118708-

>mRNA_F-serratus_M_contig76.18852.1 ID=mRNA_F-serratus_M_contig76.18852.1|Name=mRNA_F-serratus_M_contig76.18852.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig76:117120..118708- (Fucus serratus male)
CGCTTTCGCCCTAAATACCCGTCGATATTGCCTGGGTTGTCCTCAATTGC
CGTAGAAACCGTGCCTCCATCATCACGAGAGAGAGACATGCCCACGAAGA
GCGCAATACGCTGCGCTTTCGCCCTAAATACCCGTCGATATTGCCTGGGT
TGTCCTCAATTGCCGTAGAAACCGTGCCTCCATCATCACGAGAGAGAGAC
ATGCCCACGAAGAGCGCAATACGCTGGACGCCGCTCCTGCACGATGATCC
CGAAGGGCGACAAGGAGCAACATACTTCGACGATGCCCTGTGCCCAGGCG
TAGCCCTGCCCCGCCACAGCGCGGGCGATGCTCACCCGCTTTCGCTTCCC
CGCGTAAAACAGCGCGCTCGCCGAGCTACGGTCGTGAGTAGCGCGCCCAG
GAGGCGGAGTAGCTCGACGATGGATGGCGGCGCCGTCAGCAGAAGCACCA
GCGAATCGGAAATTGGTGTCACGCGCAGCGTCGGCAATGGTGGTTTGCTT
GCGAAACCAGAACTCGACGCCGCTCCTGCACGATGATCCCGAAGGGCGAC
AAGGAGCAACATACTTCGACGATGCCCTGTGCCCAGGCGTAGCCCTGCCC
CGCCACAGCGCGGGCGATGCTCACCCGCTTTCGCTTCCCCGCGTAAAACA
GCGCGCTCGCCGAGCTACGGTCGTGAGTAGCGCGCCCAGGAGGCGGAGTA
GCTCGACGATGGATGGCGGCGCCGTCAGCAGAAGCACCAGCGAATCGGAA
ATTGGTGTCACGCGCAGCGTCGGCAATGGTGGTTTGCTTGCGAAACCAGA
ACTC
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