mRNA_F-serratus_M_contig7580.18836.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7580.18836.1
Unique NamemRNA_F-serratus_M_contig7580.18836.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7580.18836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7580contigF-serratus_M_contig7580:14162..15056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size895
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7580.18836.1prot_F-serratus_M_contig7580.18836.1Fucus serratus malepolypeptideF-serratus_M_contig7580 14227..15015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932280.2130122-UTR-F-serratus_M_contig7580:14161..142261622932280.2130122-UTR-F-serratus_M_contig7580:14161..14226Fucus serratus maleUTRF-serratus_M_contig7580 14162..14226 +
1690964232.6165912-UTR-F-serratus_M_contig7580:14161..142261690964232.6165912-UTR-F-serratus_M_contig7580:14161..14226Fucus serratus maleUTRF-serratus_M_contig7580 14162..14226 +
1622932280.2465186-UTR-F-serratus_M_contig7580:15015..150561622932280.2465186-UTR-F-serratus_M_contig7580:15015..15056Fucus serratus maleUTRF-serratus_M_contig7580 15016..15056 +
1690964232.6402824-UTR-F-serratus_M_contig7580:15015..150561690964232.6402824-UTR-F-serratus_M_contig7580:15015..15056Fucus serratus maleUTRF-serratus_M_contig7580 15016..15056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932280.2306979-CDS-F-serratus_M_contig7580:14226..150151622932280.2306979-CDS-F-serratus_M_contig7580:14226..15015Fucus serratus maleCDSF-serratus_M_contig7580 14227..15015 +
1690964232.6296835-CDS-F-serratus_M_contig7580:14226..150151690964232.6296835-CDS-F-serratus_M_contig7580:14226..15015Fucus serratus maleCDSF-serratus_M_contig7580 14227..15015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7580.18836.1

>prot_F-serratus_M_contig7580.18836.1 ID=prot_F-serratus_M_contig7580.18836.1|Name=mRNA_F-serratus_M_contig7580.18836.1|organism=Fucus serratus male|type=polypeptide|length=263bp
MPLIPDTSVSQMGGSDNLMGQMSTARGSTELRPPPDFTLGPECWITLPET
VREKLWQVYHLYNPTTIAEDDESTWAVVEAICRAREALAEKTQEGLVEEA
RSDQEFGPTIHQDWPRQPLKVARAEVPAWVGSQSERRYVQGRRWTPRPWD
KIAKFIDKFNTLSEWKFHSLWELGSAQCQERMDLPAQRAIMELGRVGEND
FSWRSSFPELADIKTAILKDLWDHMEIFFQGLHQAVWDVLQNLVRATLFK
TRESVGRDTNRS*
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mRNA from alignment at F-serratus_M_contig7580:14162..15056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7580.18836.1 ID=mRNA_F-serratus_M_contig7580.18836.1|Name=mRNA_F-serratus_M_contig7580.18836.1|organism=Fucus serratus male|type=mRNA|length=895bp|location=Sequence derived from alignment at F-serratus_M_contig7580:14162..15056+ (Fucus serratus male)
TCACAGACGCCGTCGAGCGTAGAGGGCAATGCAGGGAGAAACCCTCAAAG
GCTGCAACAGGGCATATGCCCTTGATTCCGGATACGTCAGTGAGCCAAAT
GGGAGGCTCAGACAACTTAATGGGACAAATGTCCACAGCGCGAGGCTCTA
CGGAGTTGAGACCACCGCCGGATTTTACCTTGGGCCCGGAGTGCTGGATT
ACGCTGCCCGAAACAGTTCGGGAGAAATTATGGCAGGTTTATCACCTGTA
CAACCCGACCACCATCGCGGAAGATGACGAATCTACGTGGGCGGTTGTGG
AAGCCATCTGCAGAGCTCGCGAAGCGCTGGCCGAAAAGACTCAGGAGGGC
TTAGTGGAGGAAGCAAGATCGGACCAAGAATTTGGGCCCACGATTCACCA
GGACTGGCCGCGGCAGCCACTTAAGGTGGCGAGAGCGGAGGTACCAGCTT
GGGTGGGCTCCCAGTCGGAGCGCCGTTACGTCCAGGGACGTAGGTGGACG
CCTCGGCCATGGGATAAAATAGCCAAATTCATCGACAAATTCAACACTTT
GAGCGAATGGAAATTCCACTCTCTGTGGGAGCTCGGGTCAGCCCAATGCC
AGGAGCGAATGGATCTGCCAGCCCAGAGAGCCATCATGGAGCTAGGTCGA
GTTGGGGAAAATGATTTTTCCTGGAGGAGCAGTTTCCCGGAGCTGGCGGA
CATCAAAACAGCTATTTTGAAGGACCTGTGGGATCACATGGAGATCTTTT
TCCAAGGACTGCATCAGGCGGTCTGGGACGTACTGCAGAATTTAGTCCGT
GCGACCCTCTTTAAAACAAGAGAAAGTGTTGGTCGGGACACGAATCGGTC
GTAAACGTGAAAAAAGACTTTTTCAAAGCAGATTTTCCTTCGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7580:14162..15056+

>mRNA_F-serratus_M_contig7580.18836.1 ID=mRNA_F-serratus_M_contig7580.18836.1|Name=mRNA_F-serratus_M_contig7580.18836.1|organism=Fucus serratus male|type=CDS|length=1578bp|location=Sequence derived from alignment at F-serratus_M_contig7580:14162..15056+ (Fucus serratus male)
ATGCCCTTGATTCCGGATACGTCAGTGAGCCAAATGGGAGGCTCAGACAA
CTTAATGGGACAAATGTCCACAGCGCGAGGCTCTACGGAGTTGAGACCAC
CGCCGGATTTTACCTTGGGCCCGGAGTGCTGGATTACGCTGCCCGAAACA
GTTCGGGAGAAATTATGGCAGGTTTATCACCTGTACAACCCGACCACCAT
CGCGGAAGATGACGAATCTACGTGGGCGGTTGTGGAAGCCATCTGCAGAG
CTCGCGAAGCGCTGGCCGAAAAGACTCAGGAGGGCTTAGTGGAGGAAGCA
AGATCGGACCAAGAATTTGGGCCCACGATTCACCAGGACTGGCCGCGGCA
GCCACTTAAGGTGGCGAGAGCGGAGGTACCAGCTTGGGTGGGCTCCCAGT
CGGAGCGCCGTTACGTCCAGGGACGTAGGTGGACGCCTCGGCCATGGGAT
AAAATAGCCAAATTCATCGACAAATTCAACACTTTGAGCGAATGGAAATT
CCACTCTCTGTGGGAGCTCGGGTCAGCCCAATGCCAGGAGCGAATGGATC
TGCCAGCCCAGAGAGCCATCATGGAGCTAGGTCGAGTTGGGGAAAATGAT
TTTTCCTGGAGGAGCAGTTTCCCGGAGCTGGCGGACATCAAAACAGCTAT
TTTGAAGGACCTGTGGGATCACATGGAGATCTTTTTCCAAGGACTGCATC
AGGCGGTCTGGGACGTACTGCAGAATTTAGTCCGTGCGACCCTCTTTAAA
ACAAGAGAAAGTGTTGGTCGGGACACGAATCGGTCGTAAATGCCCTTGAT
TCCGGATACGTCAGTGAGCCAAATGGGAGGCTCAGACAACTTAATGGGAC
AAATGTCCACAGCGCGAGGCTCTACGGAGTTGAGACCACCGCCGGATTTT
ACCTTGGGCCCGGAGTGCTGGATTACGCTGCCCGAAACAGTTCGGGAGAA
ATTATGGCAGGTTTATCACCTGTACAACCCGACCACCATCGCGGAAGATG
ACGAATCTACGTGGGCGGTTGTGGAAGCCATCTGCAGAGCTCGCGAAGCG
CTGGCCGAAAAGACTCAGGAGGGCTTAGTGGAGGAAGCAAGATCGGACCA
AGAATTTGGGCCCACGATTCACCAGGACTGGCCGCGGCAGCCACTTAAGG
TGGCGAGAGCGGAGGTACCAGCTTGGGTGGGCTCCCAGTCGGAGCGCCGT
TACGTCCAGGGACGTAGGTGGACGCCTCGGCCATGGGATAAAATAGCCAA
ATTCATCGACAAATTCAACACTTTGAGCGAATGGAAATTCCACTCTCTGT
GGGAGCTCGGGTCAGCCCAATGCCAGGAGCGAATGGATCTGCCAGCCCAG
AGAGCCATCATGGAGCTAGGTCGAGTTGGGGAAAATGATTTTTCCTGGAG
GAGCAGTTTCCCGGAGCTGGCGGACATCAAAACAGCTATTTTGAAGGACC
TGTGGGATCACATGGAGATCTTTTTCCAAGGACTGCATCAGGCGGTCTGG
GACGTACTGCAGAATTTAGTCCGTGCGACCCTCTTTAAAACAAGAGAAAG
TGTTGGTCGGGACACGAATCGGTCGTAA
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