mRNA_F-serratus_M_contig758.18834.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig758.18834.1
Unique NamemRNA_F-serratus_M_contig758.18834.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig758.18834.1 vs. uniprot
Match: D8LTP4_ECTSI (Putative Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.510e-15
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 LVAGLARIAAADHRGNAAEMEGRVAWCRSMVRTLERARDVLAKTTPRRGE--AERILLEDVQDSIRGMAEIVQCYKNKNMVT 243
            +VAGL R+A+ DH+ N  E E R  WCRS+V TLERA +VLAK    RG+  A R+LL+DVQDSI  + +I++ YK+KN ++
Sbjct:  445 VVAGLVRLAS-DHKSNGRESEKRARWCRSIVHTLERAGEVLAKVKAGRGDDQAVRVLLDDVQDSIADLLQIIESYKSKNALS 525
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BLAST of mRNA_F-serratus_M_contig758.18834.1 vs. uniprot
Match: D8LI21_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI21_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.970e-13
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    4 LVAGLARIAAADHRGNAAEMEGRVAWCRSMVRTLERARDVLAKTTPRRGEAERILLEDVQDSIRGMAEIVQCYKNKNMVT 243
            +VAGLAR+AAA H+G+  +   RV WCRS+V TLERA  VL K T +  +A R+ L  V++ +  M EIV  YKNK++V+
Sbjct:  396 VVAGLARLAAASHKGDPKDKRRRVRWCRSVVLTLERALAVLGKATEQDTDAIRVALGAVREPVACMVEIVHSYKNKHVVS 475
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BLAST of mRNA_F-serratus_M_contig758.18834.1 vs. uniprot
Match: A0A6H5K0B7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0B7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.210e-9
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   52 AAEMEGRVAWCRSMVRTLERARDVLAK---TTPRRGEAERILLEDVQDSIRGMAEIVQCYKNKNMVT 243
            A E E R  WCRS+V TLERA +VL K   T    G+A R+LL+DVQDSI  + +I++ YK+KN ++
Sbjct:  128 AVESEQRARWCRSIVHTLERAGEVLGKKVKTGRGDGQAVRVLLDDVQDSIADLLQIIESYKSKNALS 194
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BLAST of mRNA_F-serratus_M_contig758.18834.1 vs. uniprot
Match: D8LI20_ECTSI (TKL family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI20_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.500e-8
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   73 VAWCRSMVRTLERARDVLAKTTPRRGEAERILLEDVQDSIRGMAEIVQCYKNKNM 237
            V WC S+ RTL RA  VLAK T    + ER+L+ED+Q+SI  M+EI+QCY ++ +
Sbjct:  307 VGWCGSVARTLRRAVRVLAKATAHDEQVERVLMEDIQESICEMSEIMQCYASRGL 361
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig758.18834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTP4_ECTSI2.510e-1552.44Putative Leucine Rich Repeat Protein Kinase (Parti... [more]
D8LI21_ECTSI1.970e-1350.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5K0B7_9PHAE1.210e-950.75Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LI20_ECTSI1.500e-850.91TKL family protein kinase n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig758contigF-serratus_M_contig758:275127..275933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D8LTP4
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons2
Model size245
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932279.9865417-CDS-F-serratus_M_contig758:275127..2752381622932279.9865417-CDS-F-serratus_M_contig758:275127..275238Fucus serratus maleCDSF-serratus_M_contig758 275128..275238 -
1690964232.5265036-CDS-F-serratus_M_contig758:275127..2752381690964232.5265036-CDS-F-serratus_M_contig758:275127..275238Fucus serratus maleCDSF-serratus_M_contig758 275128..275238 -
1622932280.0080328-CDS-F-serratus_M_contig758:275801..2759331622932280.0080328-CDS-F-serratus_M_contig758:275801..275933Fucus serratus maleCDSF-serratus_M_contig758 275802..275933 -
1690964232.5405593-CDS-F-serratus_M_contig758:275801..2759331690964232.5405593-CDS-F-serratus_M_contig758:275801..275933Fucus serratus maleCDSF-serratus_M_contig758 275802..275933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig758.18834.1prot_F-serratus_M_contig758.18834.1Fucus serratus malepolypeptideF-serratus_M_contig758 275128..275933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig758.18834.1

>prot_F-serratus_M_contig758.18834.1 ID=prot_F-serratus_M_contig758.18834.1|Name=mRNA_F-serratus_M_contig758.18834.1|organism=Fucus serratus male|type=polypeptide|length=81bp
VLVAGLARIAAADHRGNAAEMEGRVAWCRSMVRTLERARDVLAKTTPRRG
EAERILLEDVQDSIRGMAEIVQCYKNKNMVT
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mRNA from alignment at F-serratus_M_contig758:275127..275933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig758.18834.1 ID=mRNA_F-serratus_M_contig758.18834.1|Name=mRNA_F-serratus_M_contig758.18834.1|organism=Fucus serratus male|type=mRNA|length=807bp|location=Sequence derived from alignment at F-serratus_M_contig758:275127..275933- (Fucus serratus male)
GTCCTCGTGGCCGGGCTGGCGAGGATAGCGGCAGCGGATCACCGGGGGAA
CGCGGCCGAGATGGAGGGTCGGGTTGCTTGGTGCCGGTCGATGGTGCGCA
CCCTCGAACGAGCTCGTGATGTCCTGGCGAAGGTAAAAAGAGGGGGAGAC
CATTTATTTGTCCGCTTTCTAACGTCTCTTGCGGCGCATATCCATCCCCA
CCCACTTTTTGTTCTCCCATTCATTGCCCGGGTTCCGTCTGCATTTTTTT
CTTCACACCCCTCTTTTCATTTAGCATGCGTTTGGAGTCGCTAATGTTTC
GGTCAGCATAACCAGATGAGATGTAAGGGACCACGCCGAAGAAAGCATTC
CGTGAGCATTATCTCGACGACTCTTGTTGTGTCCCCGTTTTTTGTGCTGT
TTTCGTCGACTCCTTGCGAGCGACGCGTAGACCGCACGTGGGGGTGTACG
ATATCCACTTTTCTTGTCAAAGCCCTTCGACTATGATCCGGTATTGAAGC
GCCGCCACCGCGGGAGCGTAGGAGAGGCCACTTGGAACGCGTGGCCCAAA
TCATCAGGGCAAACTCTCGGTGACAGGGCGATCGTACGCGGGTCTTGCGA
CGAAACGGAAAGGCTCGCCGCCACCATCCCTCACGTTTTCTCTCCCGTGC
TCTGCTGTCTTGGCACGAAACGCTTTGGCCATGACCGTGCCCCAGACGAC
GCCGCGAAGAGGGGAGGCGGAGCGCATACTGTTGGAAGACGTCCAAGACT
CCATTCGCGGCATGGCGGAGATCGTGCAGTGCTACAAGAACAAGAACATG
GTCACGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig758:275127..275933-

>mRNA_F-serratus_M_contig758.18834.1 ID=mRNA_F-serratus_M_contig758.18834.1|Name=mRNA_F-serratus_M_contig758.18834.1|organism=Fucus serratus male|type=CDS|length=486bp|location=Sequence derived from alignment at F-serratus_M_contig758:275127..275933- (Fucus serratus male)
GTCCTCGTGGCCGGGCTGGCGAGGATAGCGGCAGCGGATCACCGGGGGAA
CGCGGCCGAGATGGAGGGTCGGGTTGCTTGGTGCCGGTCGATGGTGCGCA
CCCTCGAACGAGCTCGTGATGTCCTGGCGAAGGTCCTCGTGGCCGGGCTG
GCGAGGATAGCGGCAGCGGATCACCGGGGGAACGCGGCCGAGATGGAGGG
TCGGGTTGCTTGGTGCCGGTCGATGGTGCGCACCCTCGAACGAGCTCGTG
ATGTCCTGGCGAAGACGACGCCGCGAAGAGGGGAGGCGGAGCGCATACTG
TTGGAAGACGTCCAAGACTCCATTCGCGGCATGGCGGAGATCGTGCAGTG
CTACAAGAACAAGAACATGGTCACGACGACGCCGCGAAGAGGGGAGGCGG
AGCGCATACTGTTGGAAGACGTCCAAGACTCCATTCGCGGCATGGCGGAG
ATCGTGCAGTGCTACAAGAACAAGAACATGGTCACG
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