mRNA_F-serratus_M_contig758.18833.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig758.18833.1
Unique NamemRNA_F-serratus_M_contig758.18833.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: A0A6H5KQ31_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ31_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 9.490e-38
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRTTRLATFSFRQGGLMSLPWAAPEVLNRESATSKSDV 285
            PL+E  LR+IV+D+C GMAFLH++AFVHGDLKS+ VLFDA G AKI DLGTSLWTQ T R+AT++ R GGLMSLPWAAPEVL    AT+ SDV
Sbjct:  232 PLEEGVLRQIVRDVCEGMAFLHSKAFVHGDLKSSNVLFDARGRAKIADLGTSLWTQCTNRIATYTPRPGGLMSLPWAAPEVLRHRGATAHSDV 324
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D8LTP4_ECTSI (Putative Leucine Rich Repeat Protein Kinase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP4_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 3.480e-33
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 KGPLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRTTRLATFSFRQGGL--MSLPWAAPEVLNRESATSKSDV 285
            K PL+E  LR+IV+D+C GMAFLHA+A VHGDLKSA VLFDA G AKI D GTSLWTQ TTRLAT++ +   +  MSLPWAAPEVLNR  ++ K DV
Sbjct:  697 KEPLEEKVLRKIVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKIADFGTSLWTQHTTRLATYTTKPREMIGMSLPWAAPEVLNRRGSSFKGDV 793
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: A0A6H5JVI4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.270e-32
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 KGPLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRTTRLATFSF--RQGGLMSLPWAAPEVLNRESATSKSDV 285
            K PL+E  LR+IV+D+C GMAFLHA+A VHGDLKSA VLFDA G AKI D GTSLWTQ TTRLAT++   R+   MSLPWAAPEVLNR  ++ + DV
Sbjct:  909 KEPLEEKVLRKIVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKIADFGTSLWTQHTTRLATYTTMPREMVGMSLPWAAPEVLNRRGSSFEGDV 1005
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D8LTP7_ECTSI (Two component regulator three Y domain protein/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP7_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.180e-32
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 KGPLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRTTRLATFSFRQGGL--MSLPWAAPEVLNRESATSKSDV 285
            K PL+E  LR+IV+D+C GMAFLHA+A VHGDLKSA VLFDA G AKI D GTSLWTQ +TRLAT++ +   +  MSLPWAAPEVLNR  ++ + DV
Sbjct:  686 KEPLEEKVLRKIVRDVCCGMAFLHAKATVHGDLKSANVLFDATGRAKIADFGTSLWTQHSTRLATYTTKPREMVGMSLPWAAPEVLNRRGSSFEGDV 782
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D7FN19_ECTSI (Putative CTR1-like protein kinase/ leucine rich repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN19_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.860e-24
Identity = 54/98 (55.10%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRTTR---LATFSFRQGGL--MSLPWAAPEVLNRESATSKSDV 285
            PL E   R+I+KDIC+GMAFLH+++ VHGDLKSA +L DA G AKIGD GTS WTQ T R   LAT++   G    +S  W APEVL +++ +  SDV
Sbjct:  986 PLPEEQSRQIIKDICAGMAFLHSKSTVHGDLKSANILLDARGRAKIGDFGTSRWTQNTERSTGLATYTTNPGPSTHISFAWTAPEVLEKQTTSKASDV 1083
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.940e-24
Identity = 56/97 (57.73%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRT--TRLATFSFRQGGL--MSLPWAAPEVLNRESATSKSDV 285
            P  E   RRI+ D+CSGMAFLH++  VHGDLKSA VL D  G AKIGD GTS W Q T  T LAT++ R      MSL W+APEVL  E +T +SDV
Sbjct:  214 PFPEEQSRRIIGDVCSGMAFLHSKDTVHGDLKSANVLLDGAGRAKIGDFGTSRWAQHTNSTGLATYTTRSSRSTPMSLAWSAPEVLEAEGSTYESDV 310
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.280e-24
Identity = 57/97 (58.76%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRT--TRLATFSFRQ--GGLMSLPWAAPEVLNRESATSKSDV 285
            PL E   RRI+ DIC+GMAFLH++  VHGDLKSA VL D  G AKIGD GTS W+Q T  T LAT++ R   G  MSL W+APEVL    +T  SDV
Sbjct:  777 PLPEEQSRRIIGDICAGMAFLHSKDTVHGDLKSANVLLDGSGRAKIGDFGTSRWSQHTNSTGLATYTTRSSPGTQMSLAWSAPEVLESGGSTRASDV 873
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.430e-23
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRT--TRLATFSFR--QGGLMSLPWAAPEVLNRESATSKSDV 285
            PL E   R+I+ DIC+GMAFLH +  VHGDLKSA VL D  G AKIGD GTS W+Q T  T LAT++ +  Q   MSL W+APEVL    +T KSDV
Sbjct:  902 PLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLATYTTKANQSTQMSLAWSAPEVLESGGSTYKSDV 998
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.440e-23
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLWTQRT--TRLATFSFR--QGGLMSLPWAAPEVLNRESATSKSDV 285
            PL E   R+I+ DIC+GMAFLH +  VHGDLKSA VL D  G AKIGD GTS W+Q T  T LAT++ +  Q   MSL W+APEVL    +T KSDV
Sbjct:  927 PLPEEKSRQIIGDICAGMAFLHGKNTVHGDLKSANVLLDGGGRAKIGDFGTSRWSQHTNSTGLATYTTKANQSTQMSLAWSAPEVLESGGSTYKSDV 1023
[Close]
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Match: D7FRQ5_ECTSI (Similar to CG1848-PA, isoform A/ leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ5_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.660e-23
Identity = 53/98 (54.08%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    7 PLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGDLGTSLW---TQRTTRLATFSFRQGGL--MSLPWAAPEVLNRESATSKSDV 285
            PL E+  R+I+ D+C+GMAFLH++A VHGDLKSA VL D  G AKIGD GTS W   T+R+T LAT++   G    +SL W APEVL  +  +  SDV
Sbjct:  762 PLPEDKCRQIIHDVCAGMAFLHSKATVHGDLKSANVLLDGRGRAKIGDFGTSRWAQNTERSTGLATYTTNPGPSTHISLAWTAPEVLEAKETSKASDV 859
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig758.18833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ31_9PHAE9.490e-3870.97Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LTP4_ECTSI3.480e-3367.01Putative Leucine Rich Repeat Protein Kinase (Parti... [more]
A0A6H5JVI4_9PHAE2.270e-3267.01Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LTP7_ECTSI4.180e-3264.95Two component regulator three Y domain protein/ le... [more]
D7FN19_ECTSI2.860e-2455.10Putative CTR1-like protein kinase/ leucine rich re... [more]
D8LAU2_ECTSI2.940e-2457.73Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LRE9_ECTSI5.280e-2458.76Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D7G7X7_ECTSI3.430e-2357.73ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE3.440e-2357.73Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FRQ5_ECTSI4.660e-2354.08Similar to CG1848-PA, isoform A/ leucine rich repe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig758contigF-serratus_M_contig758:272681..273701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3e-28
Seed eggNOG ortholog2880.D8LTP4
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
Ec32 ortholog descriptionProtein kinase
Ec32 orthologEc-04_002930.1
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons3
Model size286
Cds size285
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig758.18833.1prot_F-serratus_M_contig758.18833.1Fucus serratus malepolypeptideF-serratus_M_contig758 272681..273701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932279.9016013-CDS-F-serratus_M_contig758:272680..2727191622932279.9016013-CDS-F-serratus_M_contig758:272680..272719Fucus serratus maleCDSF-serratus_M_contig758 272681..272719 -
1690964232.486009-CDS-F-serratus_M_contig758:272680..2727191690964232.486009-CDS-F-serratus_M_contig758:272680..272719Fucus serratus maleCDSF-serratus_M_contig758 272681..272719 -
1622932279.9173536-CDS-F-serratus_M_contig758:273000..2731051622932279.9173536-CDS-F-serratus_M_contig758:273000..273105Fucus serratus maleCDSF-serratus_M_contig758 273001..273105 -
1690964232.4994469-CDS-F-serratus_M_contig758:273000..2731051690964232.4994469-CDS-F-serratus_M_contig758:273000..273105Fucus serratus maleCDSF-serratus_M_contig758 273001..273105 -
1622932279.9360929-CDS-F-serratus_M_contig758:273560..2737011622932279.9360929-CDS-F-serratus_M_contig758:273560..273701Fucus serratus maleCDSF-serratus_M_contig758 273561..273701 -
1690964232.5087445-CDS-F-serratus_M_contig758:273560..2737011690964232.5087445-CDS-F-serratus_M_contig758:273560..273701Fucus serratus maleCDSF-serratus_M_contig758 273561..273701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig758.18833.1

>prot_F-serratus_M_contig758.18833.1 ID=prot_F-serratus_M_contig758.18833.1|Name=mRNA_F-serratus_M_contig758.18833.1|organism=Fucus serratus male|type=polypeptide|length=95bp
KGPLDENTLRRIVKDICSGMAFLHAEAFVHGDLKSAAVLFDAEGNAKIGD
LGTSLWTQRTTRLATFSFRQGGLMSLPWAAPEVLNRESATSKSDV
back to top

mRNA from alignment at F-serratus_M_contig758:272681..273701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig758.18833.1 ID=mRNA_F-serratus_M_contig758.18833.1|Name=mRNA_F-serratus_M_contig758.18833.1|organism=Fucus serratus male|type=mRNA|length=1021bp|location=Sequence derived from alignment at F-serratus_M_contig758:272681..273701- (Fucus serratus male)
AAGGGGCCCCTCGACGAAAACACACTGCGACGCATAGTCAAGGACATCTG
CTCCGGGATGGCGTTCCTTCACGCCGAGGCGTTCGTTCACGGAGATCTCA
AGTCGGCCGCAGTACTGTTTGACGCGGAGGGAAACGCGAAGGTGAGGGTT
TCGGTGTTGTTGACAAAATGCCGATTTGAGTTCACCGAAGCGATCCACCC
CGGGAGACAAATTGTGAGTGTTATTTACACATATTATGTAGTGTTCCTCG
TAGAGTTAAAGCCATTGTTTCAGAAAACCAGCCATGATTTTTTTTGTATG
GTTTTCACTTTCATATGCCTACGTGGTTACCTATTTTTCACGGAACTTTT
ATTCATGTTGGACACTCGCTTGACTTGCGACTTTAGCTCCTCCCCGCTAC
CACTTGCGCAGGAGACAAAATTATTGACGTGTCTAGTATGTATTTTAGCG
CAAGCGCGACGCAGCTGGTAAGGTGTTCGCCTCTTGACGCCTGCTATCAG
GAGCCCAAACAGACGCCTGCGTTGTTGTGCGGCTCCAGCCATCGAAAAAA
TTGTTGTCCGCTGTCGCTCGCCGCACCTGGTCCATCCGCGTTACAGATTG
GTGATCTCGGCACCTCGCTGTGGACGCAACGGACGACTCGTCTCGCCACA
TTTTCGTTTCGCCAGGGGGGACTCATGAGCCTCCCTTGGGCTGCACCTGA
GGTGATTGTTCATTTATGCACGCACGATTCTGTGGGATCGCGAAGAATTC
AGTGTTTGCCTATGGGCTGATGATGTTGCATCCGGTCGACAGGAGCCCCT
TTGGTCTGAACGGGGCATGCGTTTTGGGCCTGATGTGTCCCGCTTACGTC
GCGACCCACCAACGATGCCTCGGATGCAGCGTCCTTTGAGAGACGAGCGC
GATCCTGCAGCAGACGAGTGTGTCGAAGTCTCTTGGAAATATCTATCTAT
CTAATTGTGTTACCTTTCTGCCCACGCGTCAGGTGCTCAACCGAGAGAGT
GCCACCTCCAAGAGTGACGTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig758:272681..273701-

>mRNA_F-serratus_M_contig758.18833.1 ID=mRNA_F-serratus_M_contig758.18833.1|Name=mRNA_F-serratus_M_contig758.18833.1|organism=Fucus serratus male|type=CDS|length=570bp|location=Sequence derived from alignment at F-serratus_M_contig758:272681..273701- (Fucus serratus male)
AAGGGGCCCCTCGACGAAAACACACTGCGACGCATAGTCAAGGACATCTG
CTCCGGGATGGCGTTCCTTCACGCCGAGGCGTTCGTTCACGGAGATCTCA
AGTCGGCCGCAGTACTGTTTGACGCGGAGGGAAACGCGAAGAAGGGGCCC
CTCGACGAAAACACACTGCGACGCATAGTCAAGGACATCTGCTCCGGGAT
GGCGTTCCTTCACGCCGAGGCGTTCGTTCACGGAGATCTCAAGTCGGCCG
CAGTACTGTTTGACGCGGAGGGAAACGCGAAGATTGGTGATCTCGGCACC
TCGCTGTGGACGCAACGGACGACTCGTCTCGCCACATTTTCGTTTCGCCA
GGGGGGACTCATGAGCCTCCCTTGGGCTGCACCTGAGATTGGTGATCTCG
GCACCTCGCTGTGGACGCAACGGACGACTCGTCTCGCCACATTTTCGTTT
CGCCAGGGGGGACTCATGAGCCTCCCTTGGGCTGCACCTGAGGTGCTCAA
CCGAGAGAGTGCCACCTCCAAGAGTGACGTCGTGCTCAACCGAGAGAGTG
CCACCTCCAAGAGTGACGTC
back to top