mRNA_F-serratus_M_contig757.18829.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig757.18829.1
Unique NamemRNA_F-serratus_M_contig757.18829.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig757.18829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig757contigF-serratus_M_contig757:345425..346088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size664
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig757.18829.1prot_F-serratus_M_contig757.18829.1Fucus serratus malepolypeptideF-serratus_M_contig757 345649..346059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932277.3051305-UTR-F-serratus_M_contig757:345424..3456481622932277.3051305-UTR-F-serratus_M_contig757:345424..345648Fucus serratus maleUTRF-serratus_M_contig757 345425..345648 +
1690964231.173881-UTR-F-serratus_M_contig757:345424..3456481690964231.173881-UTR-F-serratus_M_contig757:345424..345648Fucus serratus maleUTRF-serratus_M_contig757 345425..345648 +
1622932277.3452551-UTR-F-serratus_M_contig757:346059..3460881622932277.3452551-UTR-F-serratus_M_contig757:346059..346088Fucus serratus maleUTRF-serratus_M_contig757 346060..346088 +
1690964231.19674-UTR-F-serratus_M_contig757:346059..3460881690964231.19674-UTR-F-serratus_M_contig757:346059..346088Fucus serratus maleUTRF-serratus_M_contig757 346060..346088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932277.324978-CDS-F-serratus_M_contig757:345648..3460591622932277.324978-CDS-F-serratus_M_contig757:345648..346059Fucus serratus maleCDSF-serratus_M_contig757 345649..346059 +
1690964231.186724-CDS-F-serratus_M_contig757:345648..3460591690964231.186724-CDS-F-serratus_M_contig757:345648..346059Fucus serratus maleCDSF-serratus_M_contig757 345649..346059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig757.18829.1

>prot_F-serratus_M_contig757.18829.1 ID=prot_F-serratus_M_contig757.18829.1|Name=mRNA_F-serratus_M_contig757.18829.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MKNRLPPKSYRRMALRGSDKMDKHLDTLTGKIRKTNQCLAGLYHQDRQPR
LAVKADVKPDAKTREREEYRCSRSDDENYRDISSAWVGDDPTSLTSFGNI
FKPLVPERGTGDALVNEGIEAPRPHLSTVKVLILPL*
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mRNA from alignment at F-serratus_M_contig757:345425..346088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig757.18829.1 ID=mRNA_F-serratus_M_contig757.18829.1|Name=mRNA_F-serratus_M_contig757.18829.1|organism=Fucus serratus male|type=mRNA|length=664bp|location=Sequence derived from alignment at F-serratus_M_contig757:345425..346088+ (Fucus serratus male)
CAACTGTCATAAATTTTAAATTTTGGCTATCGTCGGTAATTTTCCCGCCG
TGAAATTACCGCCCTGGTGGGCGGAAGCGGTAATATGGCGGTTAACCGCC
ATAACTTGGTTTTACCGCCTACGCCAAAGTCGTCACCGCCAAGAAACGAA
AAACCGCCTATCGCCGAAAAATTACCGCCATGCTTTGATTTTACCACCTC
CGCCAAAGTCGTTACCGCCAAAAAATGAAAAACCGTCTACCACCCAAAAG
TTACCGACGTATGGCATTACGCGGGTCCGATAAAATGGACAAGCACTTGG
ATACACTTACTGGGAAGATAAGAAAGACAAATCAGTGTCTAGCAGGACTG
TATCATCAGGATCGGCAGCCACGTCTCGCCGTGAAGGCAGACGTAAAACC
AGACGCGAAGACTCGCGAGCGTGAAGAATACCGCTGCAGCAGATCAGATG
ATGAAAATTACAGAGATATTTCGTCTGCCTGGGTTGGTGATGACCCGACA
AGTTTGACCAGCTTCGGCAATATATTCAAACCTCTAGTTCCCGAACGAGG
CACCGGTGACGCTCTGGTCAACGAAGGCATCGAAGCGCCAAGGCCACATC
TTTCCACCGTAAAGGTGCTAATTTTACCCCTATAAAACCCATGTATAGAG
GTAACTATTATTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig757:345425..346088+

>mRNA_F-serratus_M_contig757.18829.1 ID=mRNA_F-serratus_M_contig757.18829.1|Name=mRNA_F-serratus_M_contig757.18829.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig757:345425..346088+ (Fucus serratus male)
ATGAAAAACCGTCTACCACCCAAAAGTTACCGACGTATGGCATTACGCGG
GTCCGATAAAATGGACAAGCACTTGGATACACTTACTGGGAAGATAAGAA
AGACAAATCAGTGTCTAGCAGGACTGTATCATCAGGATCGGCAGCCACGT
CTCGCCGTGAAGGCAGACGTAAAACCAGACGCGAAGACTCGCGAGCGTGA
AGAATACCGCTGCAGCAGATCAGATGATGAAAATTACAGAGATATTTCGT
CTGCCTGGGTTGGTGATGACCCGACAAGTTTGACCAGCTTCGGCAATATA
TTCAAACCTCTAGTTCCCGAACGAGGCACCGGTGACGCTCTGGTCAACGA
AGGCATCGAAGCGCCAAGGCCACATCTTTCCACCGTAAAGGTGCTAATTT
TACCCCTATAAATGAAAAACCGTCTACCACCCAAAAGTTACCGACGTATG
GCATTACGCGGGTCCGATAAAATGGACAAGCACTTGGATACACTTACTGG
GAAGATAAGAAAGACAAATCAGTGTCTAGCAGGACTGTATCATCAGGATC
GGCAGCCACGTCTCGCCGTGAAGGCAGACGTAAAACCAGACGCGAAGACT
CGCGAGCGTGAAGAATACCGCTGCAGCAGATCAGATGATGAAAATTACAG
AGATATTTCGTCTGCCTGGGTTGGTGATGACCCGACAAGTTTGACCAGCT
TCGGCAATATATTCAAACCTCTAGTTCCCGAACGAGGCACCGGTGACGCT
CTGGTCAACGAAGGCATCGAAGCGCCAAGGCCACATCTTTCCACCGTAAA
GGTGCTAATTTTACCCCTATAA
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