mRNA_F-serratus_M_contig756.18816.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig756.18816.1
Unique NamemRNA_F-serratus_M_contig756.18816.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig756.18816.1 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.840e-22
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    4 TFDLQQSFILDGFTIYFFKSDDLDRATNPFNISISEDEETGYVYSFTGVNTAGTPLGTGESFPFPATSRGRYVRFTPILDDEQWCSINEV 273
            TFDL  S  L   TIYF+KS++ DR TNPF +S S D  T +  SF  +NT  TPLG GE F FP  S GRYVRFT  L D+QW S+NEV
Sbjct:   30 TFDLGSSQSLIKLTIYFYKSNEEDRVTNPFVVSTSTDGTT-FTTSFEDINTIPTPLGEGEDFAFPTGSSGRYVRFTGDLADDQWLSVNEV 118
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BLAST of mRNA_F-serratus_M_contig756.18816.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.190e-21
Identity = 53/89 (59.55%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    4 TFDLQQSFILDGFTIYFFKSDDLDRATNPFNISISEDEETGYVYSFTGVNTAGTPLGTGESFPFPATSRGRYVRFTPILDDEQWCSINE 270
            TFDL  S  L   TIYF+K DD+DRATNPF +S S D  T Y  SF  VNT  T +G GE F FP  S GRYVRFT  L D+QW SINE
Sbjct:   89 TFDLGSSQSLTKLTIYFYKCDDVDRATNPFIVSTSTDGTT-YTTSFEDVNTIPTAIGAGEDFAFPTGSSGRYVRFTGELADDQWLSINE 176
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig756.18816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRB9_ECTSI1.840e-2256.67F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JTK7_9PHAE2.190e-2159.55F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig756contigF-serratus_M_contig756:111146..112016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932276.9118812-CDS-F-serratus_M_contig756:111145..1113691622932276.9118812-CDS-F-serratus_M_contig756:111145..111369Fucus serratus maleCDSF-serratus_M_contig756 111146..111369 -
1690964230.9799142-CDS-F-serratus_M_contig756:111145..1113691690964230.9799142-CDS-F-serratus_M_contig756:111145..111369Fucus serratus maleCDSF-serratus_M_contig756 111146..111369 -
1622932276.9262362-CDS-F-serratus_M_contig756:111967..1120161622932276.9262362-CDS-F-serratus_M_contig756:111967..112016Fucus serratus maleCDSF-serratus_M_contig756 111968..112016 -
1690964230.9953969-CDS-F-serratus_M_contig756:111967..1120161690964230.9953969-CDS-F-serratus_M_contig756:111967..112016Fucus serratus maleCDSF-serratus_M_contig756 111968..112016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig756.18816.1prot_F-serratus_M_contig756.18816.1Fucus serratus malepolypeptideF-serratus_M_contig756 111146..112016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig756.18816.1

>prot_F-serratus_M_contig756.18816.1 ID=prot_F-serratus_M_contig756.18816.1|Name=mRNA_F-serratus_M_contig756.18816.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MTFDLQQSFILDGFTIYFFKSDDLDRATNPFNISISEDEETGYVYSFTGV
NTAGTPLGTGESFPFPATSRGRYVRFTPILDDEQWCSINEV
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mRNA from alignment at F-serratus_M_contig756:111146..112016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig756.18816.1 ID=mRNA_F-serratus_M_contig756.18816.1|Name=mRNA_F-serratus_M_contig756.18816.1|organism=Fucus serratus male|type=mRNA|length=871bp|location=Sequence derived from alignment at F-serratus_M_contig756:111146..112016- (Fucus serratus male)
ATGACGTTCGACCTACAGCAGTCCTTCATCCTCGACGGGTTCACCATATG
TAAGGAGGGCCGGCAAAATTTGGAGCGGAGCGGGGGGATACGGGGGCGCC
TTCAGTAAACTGCGCCCAAAGCAAGCCCTTTCTTTTATCTTTGTCGCGGT
ATTTCCACCAGTGTTTCTTCCCGTGGATCTGTCGTGGTTCTGAAGGTTCT
GTAATCCTTGGTGCCATTCGGTTCAGGAAAAGCTCTTCATCCACCGCAGG
ACTTCATGCCACACTTCAATACCGTAATGGACTACGAAAGTGTACCGTAT
TATTATAGATACTCTCCTTAAGAAGACTGTTTGGCTCGTGAGGCTTATTG
CATACCAAGCACTTTGCTTCGCCGTGCAGAGATCCATCGATCGGTGATCC
GTTACCTTGACGTCAATTTTGGCTATCATCGACAAGTTTCCTCGTCTACT
TCTTTCGGCCTTGACTGACGTCATCACTCCCTGTACGGACCATGTAACCA
GTGGTGTAAGGAAGTAGAAGATGCATCTGCTATCTCCCGCATACAAAACC
TCTGTCAAGCTCCTTGTACCCCACGATACATCGTATCGCCTGACGCCACG
TCCTTTATATTCCACTCTTCTCGTGTATTTCAATATAAAAACAAAAGACT
TTTTCAAAAGCGACGACCTGGACAGGGCGACCAATCCGTTCAACATAAGC
ATCTCAGAAGATGAAGAAACGGGGTACGTGTACTCTTTCACCGGCGTGAA
TACTGCGGGGACTCCGCTCGGGACGGGCGAAAGTTTCCCCTTCCCGGCGA
CATCCAGAGGCCGTTACGTGCGGTTCACCCCCATCTTGGACGATGAGCAA
TGGTGCAGCATCAACGAGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig756:111146..112016-

>mRNA_F-serratus_M_contig756.18816.1 ID=mRNA_F-serratus_M_contig756.18816.1|Name=mRNA_F-serratus_M_contig756.18816.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig756:111146..112016- (Fucus serratus male)
ATGACGTTCGACCTACAGCAGTCCTTCATCCTCGACGGGTTCACCATATA
TGACGTTCGACCTACAGCAGTCCTTCATCCTCGACGGGTTCACCATATAC
TTTTTCAAAAGCGACGACCTGGACAGGGCGACCAATCCGTTCAACATAAG
CATCTCAGAAGATGAAGAAACGGGGTACGTGTACTCTTTCACCGGCGTGA
ATACTGCGGGGACTCCGCTCGGGACGGGCGAAAGTTTCCCCTTCCCGGCG
ACATCCAGAGGCCGTTACGTGCGGTTCACCCCCATCTTGGACGATGAGCA
ATGGTGCAGCATCAACGAGGTGACTTTTTCAAAAGCGACGACCTGGACAG
GGCGACCAATCCGTTCAACATAAGCATCTCAGAAGATGAAGAAACGGGGT
ACGTGTACTCTTTCACCGGCGTGAATACTGCGGGGACTCCGCTCGGGACG
GGCGAAAGTTTCCCCTTCCCGGCGACATCCAGAGGCCGTTACGTGCGGTT
CACCCCCATCTTGGACGATGAGCAATGGTGCAGCATCAACGAGGTG
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