mRNA_F-serratus_M_contig7536.18801.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7536.18801.1
Unique NamemRNA_F-serratus_M_contig7536.18801.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.890e-7
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:  139 TSAQYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            T+ QYE+C G +  I DG CD +NN E CGFDGGDCC+CT
Sbjct:  300 TAEQYEHC-GWVTRIGDGMCDDENNKEECGFDGGDCCDCT 338
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.690e-6
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:  148 QYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
             +  C G I  I DG+CD+ NN+E CG+DGGDCC CT
Sbjct:  219 DWPECEGYIYMIGDGSCDYYNNNEECGWDGGDCCSCT 255
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 9.170e-6
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:  139 TSAQYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            T   +ENC   +  + DG CD  NN+EACG+DGGDCCECT
Sbjct:   86 TVDMFENCDYALS-VGDGWCDEGNNNEACGYDGGDCCECT 124
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A383EJG0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383EJG0_9ZZZZ)

HSP 1 Score: 51.2 bits (121), Expect = 1.220e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1 
Query:  160 CTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            C G   W+ DG CD  NN++ACG+DGGDCCE T
Sbjct:   34 CDGNSSWVGDGYCDSNNNNQACGYDGGDCCEQT 66
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.260e-5
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  154 ENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            E C G I  +ADG+CD  NN+E CG+DGGDCC CT
Sbjct:  175 ETCGGNIVHLADGDCDQINNNEECGYDGGDCCFCT 209
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.380e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:  139 TSAQYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            T+   ENC G +  + DG C  +NN+E CG+DGGDCCECT
Sbjct:  127 TADMVENC-GYVRGLGDGWCHEENNNELCGYDGGDCCECT 165
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 2.400e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  139 TSAQYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            T+   E C G +  + DG CD  NN+E CG+DGGDCCECT
Sbjct:  136 TAVMVEEC-GWVRGVGDGWCDEDNNNELCGYDGGDCCECT 174
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: A0A8J2SY22_9STRA (Hypothetical protein n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SY22_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.480e-5
Identity = 20/34 (58.82%), Postives = 23/34 (67.65%), Query Frame = 1 
Query:  157 NCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            +C G   WI DG CD  NN+ AC +DGGDCCE T
Sbjct:  925 SCAGTPNWIGDGMCDSSNNNAACSYDGGDCCEAT 958
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.220e-5
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:  139 TSAQYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            T    ENC G +  + DG CD  NN+E CG+DGGDCCECT
Sbjct:  162 TIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECT 200
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BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.030e-5
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:  139 TSAQYENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT 258
            T    ENC G +  + +G CD +NN+E CG+DGGDCCECT
Sbjct:  117 TVDMVENC-GYVGSVGNGWCDEENNNEGCGYDGGDCCECT 155
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7536.18801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LEP6_ECTSI3.890e-762.50Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE2.690e-656.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB04_9PHAE9.170e-657.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A383EJG0_9ZZZZ1.220e-560.61Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A6H5JTT4_9PHAE1.260e-562.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM92_9PHAE2.380e-555.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXR2_9PHAE2.400e-555.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2SY22_9STRA2.480e-558.82Hypothetical protein n=5 Tax=Pelagomonas calceolat... [more]
D7FI87_ECTSI3.220e-557.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI4.030e-555.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7536contigF-serratus_M_contig7536:16412..16669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932273.3733544-CDS-F-serratus_M_contig7536:16411..166691622932273.3733544-CDS-F-serratus_M_contig7536:16411..16669Fucus serratus maleCDSF-serratus_M_contig7536 16412..16669 +
1690964229.381837-CDS-F-serratus_M_contig7536:16411..166691690964229.381837-CDS-F-serratus_M_contig7536:16411..16669Fucus serratus maleCDSF-serratus_M_contig7536 16412..16669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7536.18801.1prot_F-serratus_M_contig7536.18801.1Fucus serratus malepolypeptideF-serratus_M_contig7536 16412..16669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7536.18801.1

>prot_F-serratus_M_contig7536.18801.1 ID=prot_F-serratus_M_contig7536.18801.1|Name=mRNA_F-serratus_M_contig7536.18801.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MNLYRCPDVLQVDRRRSIAVARRTDMVGSSASSVVVVFIVLLICVGTSAQ
YENCTGVIEWIADGNCDWKNNDEACGFDGGDCCECT
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mRNA from alignment at F-serratus_M_contig7536:16412..16669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7536.18801.1 ID=mRNA_F-serratus_M_contig7536.18801.1|Name=mRNA_F-serratus_M_contig7536.18801.1|organism=Fucus serratus male|type=mRNA|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig7536:16412..16669+ (Fucus serratus male)
ATGAATCTGTATCGTTGTCCTGACGTTCTGCAGGTCGACCGACGACGAAG
CATTGCAGTCGCTAGACGCACCGACATGGTTGGAAGCAGCGCATCCAGCG
TGGTCGTTGTGTTTATTGTCTTGCTGATCTGCGTTGGCACTAGCGCTCAA
TACGAGAACTGCACCGGAGTCATCGAGTGGATAGCAGACGGCAACTGTGA
CTGGAAGAACAATGATGAAGCATGCGGTTTTGACGGAGGGGATTGCTGCG
AATGTACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7536:16412..16669+

>mRNA_F-serratus_M_contig7536.18801.1 ID=mRNA_F-serratus_M_contig7536.18801.1|Name=mRNA_F-serratus_M_contig7536.18801.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig7536:16412..16669+ (Fucus serratus male)
ATGAATCTGTATCGTTGTCCTGACGTTCTGCAGGTCGACCGACGACGAAG
CATTGCAGTCGCTAGACGCACCGACATGGTTGGAAGCAGCGCATCCAGCG
TGGTCGTTGTGTTTATTGTCTTGCTGATCTGCGTTGGCACTAGCGCTCAA
TACGAGAACTGCACCGGAGTCATCGAGTGGATAGCAGACGGCAACTGTGA
CTGGAAGAACAATGATGAAGCATGCGGTTTTGACGGAGGGGATTGCTGCG
AATGTACCATGAATCTGTATCGTTGTCCTGACGTTCTGCAGGTCGACCGA
CGACGAAGCATTGCAGTCGCTAGACGCACCGACATGGTTGGAAGCAGCGC
ATCCAGCGTGGTCGTTGTGTTTATTGTCTTGCTGATCTGCGTTGGCACTA
GCGCTCAATACGAGAACTGCACCGGAGTCATCGAGTGGATAGCAGACGGC
AACTGTGACTGGAAGAACAATGATGAAGCATGCGGTTTTGACGGAGGGGA
TTGCTGCGAATGTACC
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