mRNA_F-serratus_M_contig750.18785.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig750.18785.1
Unique NamemRNA_F-serratus_M_contig750.18785.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig750.18785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig750contigF-serratus_M_contig750:186861..187531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size326
Cds size324
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig750.18785.1prot_F-serratus_M_contig750.18785.1Fucus serratus malepolypeptideF-serratus_M_contig750 186861..187530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932269.4183815-CDS-F-serratus_M_contig750:186860..1869381622932269.4183815-CDS-F-serratus_M_contig750:186860..186938Fucus serratus maleCDSF-serratus_M_contig750 186861..186938 +
1690964227.40268-CDS-F-serratus_M_contig750:186860..1869381690964227.40268-CDS-F-serratus_M_contig750:186860..186938Fucus serratus maleCDSF-serratus_M_contig750 186861..186938 +
1622932269.438251-CDS-F-serratus_M_contig750:187104..1872811622932269.438251-CDS-F-serratus_M_contig750:187104..187281Fucus serratus maleCDSF-serratus_M_contig750 187105..187281 +
1690964227.411727-CDS-F-serratus_M_contig750:187104..1872811690964227.411727-CDS-F-serratus_M_contig750:187104..187281Fucus serratus maleCDSF-serratus_M_contig750 187105..187281 +
1622932269.466308-CDS-F-serratus_M_contig750:187461..1875301622932269.466308-CDS-F-serratus_M_contig750:187461..187530Fucus serratus maleCDSF-serratus_M_contig750 187462..187530 +
1690964227.42017-CDS-F-serratus_M_contig750:187461..1875301690964227.42017-CDS-F-serratus_M_contig750:187461..187530Fucus serratus maleCDSF-serratus_M_contig750 187462..187530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig750.18785.1

>prot_F-serratus_M_contig750.18785.1 ID=prot_F-serratus_M_contig750.18785.1|Name=mRNA_F-serratus_M_contig750.18785.1|organism=Fucus serratus male|type=polypeptide|length=108bp
HCRCGAGLQVRGGARRVDDVIREKCQDMTRKSDREKTKMKINHGVFEKAL
GEEGVLGTVFQSGLCDRGVHKVHAPATLWMTTKVKDQMLLFTTAVRKVAT
LEVAVRDA
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mRNA from alignment at F-serratus_M_contig750:186861..187531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig750.18785.1 ID=mRNA_F-serratus_M_contig750.18785.1|Name=mRNA_F-serratus_M_contig750.18785.1|organism=Fucus serratus male|type=mRNA|length=671bp|location=Sequence derived from alignment at F-serratus_M_contig750:186861..187531+ (Fucus serratus male)
CATTGCCGATGTGGTGCAGGTCTGCAAGTTCGGGGAGGAGCTCGTCGTGT
AGATGACGTAATTCGGGAAAAATGTCAGGTGAGGAATTCATCCGTCGTTG
CTCACCTATTGCGAATTTTCTTCCATTGTGCTATCGAGGTTAATGGTAAC
CTAACTAGGAAAATATTTGCAGGTGTCTCCGGGTACGGTATTAACTGGAA
CACCCCGATTTAAATGTACTCCACCCTTCGCGTCCGGCCGGCAGGACATG
ACAAGGAAGTCTGACCGAGAAAAAACGAAAATGAAGATCAATCACGGTGT
TTTCGAAAAAGCCCTCGGAGAAGAGGGTGTTCTAGGCACCGTGTTTCAAT
CGGGGCTTTGTGATAGGGGCGTACATAAAGTGCACGCCCCGGCGACTCTA
TGGATGACAACGAAGGTCAAAGTGAGAGACGTAGACTTCCCATATGGATC
CAACCTTAAGCAGCTTACTGCCGCTTTTATTCGTCGTTATTTGCGCCGAA
GTTAATGGCATACCGTAAACAATCCAGTTGCACTTTGAGGTGCGACGTAG
CACCTGTCTAACTGTCGTTTACTTCTGCCTTCGCGTTGACTACATTGCTA
GGACCAGATGCTGTTGTTCACGACAGCGGTGCGAAAGGTCGCCACGCTAG
AGGTGGCTGTGAGGGACGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig750:186861..187531+

>mRNA_F-serratus_M_contig750.18785.1 ID=mRNA_F-serratus_M_contig750.18785.1|Name=mRNA_F-serratus_M_contig750.18785.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig750:186861..187531+ (Fucus serratus male)
CATTGCCGATGTGGTGCAGGTCTGCAAGTTCGGGGAGGAGCTCGTCGTGT
AGATGACGTAATTCGGGAAAAATGTCAGCATTGCCGATGTGGTGCAGGTC
TGCAAGTTCGGGGAGGAGCTCGTCGTGTAGATGACGTAATTCGGGAAAAA
TGTCAGGACATGACAAGGAAGTCTGACCGAGAAAAAACGAAAATGAAGAT
CAATCACGGTGTTTTCGAAAAAGCCCTCGGAGAAGAGGGTGTTCTAGGCA
CCGTGTTTCAATCGGGGCTTTGTGATAGGGGCGTACATAAAGTGCACGCC
CCGGCGACTCTATGGATGACAACGAAGGTCAAAGACATGACAAGGAAGTC
TGACCGAGAAAAAACGAAAATGAAGATCAATCACGGTGTTTTCGAAAAAG
CCCTCGGAGAAGAGGGTGTTCTAGGCACCGTGTTTCAATCGGGGCTTTGT
GATAGGGGCGTACATAAAGTGCACGCCCCGGCGACTCTATGGATGACAAC
GAAGGTCAAAGACCAGATGCTGTTGTTCACGACAGCGGTGCGAAAGGTCG
CCACGCTAGAGGTGGCTGTGAGGGACGCAGACCAGATGCTGTTGTTCACG
ACAGCGGTGCGAAAGGTCGCCACGCTAGAGGTGGCTGTGAGGGACGCA
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