mRNA_F-serratus_M_contig75.18774.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18774.1
Unique NamemRNA_F-serratus_M_contig75.18774.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig75.18774.1 vs. uniprot
Match: A0A6H5KEI0_9PHAE (DUF4206 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI0_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 4.990e-78
Identity = 193/454 (42.51%), Postives = 239/454 (52.64%), Query Frame = 1 
Query:    7 KEFQTFAGRVSAAADERLNRFDGGTYNEFFRLYSQR*SANTESAADDEQWQIDALLEELRLTMEAPGLQSAPSGTVLHTDATEAGVGPALSQVFATLEKCLFFGAKGSAPDFWWVLRRVGGTDLCSSNAEVTGIRSNGRVTTDGVHQVKATVQPNPGPAAVDGTMIRKPAEANEGSVPECLVFRISDLTRVQTGHGRCRAWTRGLLGLDGAAVEKALQRAAGVAARFGGGLANFSAQEVWNDGA--EGVKDNLG-SVVSVRGKVDIHHDGLKSGVNA*QADPDAGGGSS--------------VASDPRVTSADDN--------RDGSASPPPGNLPLWLRPGPQGVSILEDLCKLCRGFQTRLN*RGLFVRPSLDHAWLDQENIPAATTYTWPRFPREELRCSVRGAGLAAANGEYYPVTTEKDE-----IGGRS-------LKLVGPNDCPV 1257
            KEFQ FAGR SA A +RL+R DGGTY  F RLY       T +  D+EQ QI  LLEEL+L ME+P L + P GTVLHT   E   G AL+++   LEKCLFFGA+G  PDFW VL   GG    +       + S G +  DG +      Q N      D           E + P+ L   +  LTRV TGHGRCRAW RGLLG+DGA+ E  L+RA   A +     A+ +A    N+G   + + D +  S  S    VD+ +    +  NA       GGG S              VA++    S   +          GSAS  P  LPLWLRP  QGVS++++LC++      RL  R L VRPSLDHAWLDQEN+ A TTYTWP+F R +LRC VRGAGL+AANGEY P     D       GG S       L L+GPN C +
Sbjct:   14 KEFQAFAGRFSAVATDRLDRVDGGTY--FSRLYQ------TSNTTDEEQRQIVTLLEELQLAMESPLLLAPPQGTVLHTGMAEGETGLALARLCVALEKCLFFGAEGPMPDFWRVLG--GGASEGADARSPAAVSSGGDL--DGFNG-----QGNSADVGSDSEEGGDTGTRGERA-PDPLAAVVGRLTRVHTGHGRCRAWARGLLGVDGASAESELRRAVAAAVQLTRIAADGAAVGTGNEGQGDQALNDAIACSTPSEEQPVDLSN----ASHNANPDKRGGGGGDSPRSGNTESATTVPLVAAERIAVSTFKHVHDAPSFAGPGSASTSPSQLPLWLRPSRQGVSVVDELCRIVVELSGRLKERELTVRPSLDHAWLDQENVAAVTTYTWPQFRRTKLRCYVRGAGLSAANGEYLPTERPDDGEGASVYGGDSSGGNCPGLSLIGPNGCNI 445
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BLAST of mRNA_F-serratus_M_contig75.18774.1 vs. uniprot
Match: D7FQ81_ECTSI (DUF4206 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ81_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.490e-67
Identity = 175/469 (37.31%), Postives = 223/469 (47.55%), Query Frame = 1 
Query:    1 YLKEFQTFAGRVSAAADERLNRFDGGTYNEFFRLYSQR*SAN--TESAADDEQWQIDALLEELRLTMEAPGLQSAPSGTVLHTDATEAGVGPALSQVFATLEKCLFFGAKGSAPDFWWVLRRVGGTDLCSSNAEVTGIRSNGRVTTDGVHQVKATVQPNPGPAAVDGTMIRKPAEANEGSVPECLVFRISDLTRVQTGHGRCRAW---TRGLLGLDGAAVEKALQRAAGVAARFGGGLANFSAQEVWNDGA--EGVKDNLGSVVSVRGKVDIHHDGLKSGVNA*QADPDAGGGS------------------------SVASDPRVTSADDNRD-GSASPPPGNLPLWLRPGPQGVSILEDLCKLCRGFQTRLN*RGLFVRPSLDHAWLDQENIPAATTYTWPRFPREELRCSVRGAGLAAANGEYYPVTTEKDEIGGR------------SLKLVGPNDCPVYHRDYP 1275
            + KEFQ FAGR SA A +RL+R DGGTY  F RLY  R      T +  D+EQ QI  LLEEL+L ME+P L + P GTVLHT   E   G AL+++   LEKCLFFGA+G  PDFW VL                                        G  A +G   R PA  + G   +    + +   +   G G         RGL G+DGA+ E  L+RA   A +      + +A    N+G     + D +  +     ++  H +   +       DPD GG                          +V++  RV  A      GSAS PP  LPLWLRPG QG S++++LC++      RL  RGL VRPSLDHAWLDQEN+ AATTYTWP+F R +LRC VRGAGL+AANGEY P     D  G               L L+GPN C +    +P
Sbjct:   12 FSKEFQAFAGRFSAVATDRLDRVDGGTY--FSRLYQVREQVREQTNNTTDEEQRQIGTLLEELQLAMESPLLLAPPQGTVLHTGMAEGETGLALARLCVALEKCLFFGAEGPMPDFWRVL----------------------------------------GGGASEGGDARSPAAVSSGGDLDGFNGQGN---KADVGSGSEEGGDTGARGLFGVDGASAESELRRAVATAVQLTRIATDGAAVGTGNEGQGDRALNDAMACIPPSEEQLVDHSNASHN------TDPDKGGXXXXDGPTSGNTKSATTVPLVAGERIAVSTFERVHDAPSFAGPGSASTPPSQLPLWLRPGRQGASVVDELCRIVVELSGRLKERGLTVRPSLDHAWLDQENVAAATTYTWPQFRRTKLRCYVRGAGLSAANGEYLPAERPDDGEGANVYGGDSSGGSCPGLSLIGPNGCSICCLPHP 429
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEI0_9PHAE4.990e-7842.51DUF4206 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FQ81_ECTSI1.490e-6737.31DUF4206 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:838963..841404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog2880.D7FQ81
Preferred namePLEKHM2
KEGG koko:K15348
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006996,GO:0007030,GO:0008092,GO:0008150,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0019894,GO:0031090,GO:0031410,GO:0031982,GO:0032418,GO:0032879,GO:0032880,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051640,GO:0051641,GO:0065007,GO:0071840,GO:0097708,GO:0098588,GO:0098805,GO:1903525,GO:1903527,GO:1903729
EggNOG free text desc.positive regulation of ruffle assembly
EggNOG OGsKOG1829@1,KOG1829@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size1544
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18774.1prot_F-serratus_M_contig75.18774.1Fucus serratus malepolypeptideF-serratus_M_contig75 840053..840691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932268.1605623-UTR-F-serratus_M_contig75:838962..8390881622932268.1605623-UTR-F-serratus_M_contig75:838962..839088Fucus serratus maleUTRF-serratus_M_contig75 838963..839088 +
1690964226.809463-UTR-F-serratus_M_contig75:838962..8390881690964226.809463-UTR-F-serratus_M_contig75:838962..839088Fucus serratus maleUTRF-serratus_M_contig75 838963..839088 +
1622932268.1804395-UTR-F-serratus_M_contig75:839986..8400521622932268.1804395-UTR-F-serratus_M_contig75:839986..840052Fucus serratus maleUTRF-serratus_M_contig75 839987..840052 +
1690964226.8235137-UTR-F-serratus_M_contig75:839986..8400521690964226.8235137-UTR-F-serratus_M_contig75:839986..840052Fucus serratus maleUTRF-serratus_M_contig75 839987..840052 +
1622932268.2170737-UTR-F-serratus_M_contig75:840691..8414041622932268.2170737-UTR-F-serratus_M_contig75:840691..841404Fucus serratus maleUTRF-serratus_M_contig75 840692..841404 +
1690964226.8434012-UTR-F-serratus_M_contig75:840691..8414041690964226.8434012-UTR-F-serratus_M_contig75:840691..841404Fucus serratus maleUTRF-serratus_M_contig75 840692..841404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932268.1995978-CDS-F-serratus_M_contig75:840052..8406911622932268.1995978-CDS-F-serratus_M_contig75:840052..840691Fucus serratus maleCDSF-serratus_M_contig75 840053..840691 +
1690964226.834039-CDS-F-serratus_M_contig75:840052..8406911690964226.834039-CDS-F-serratus_M_contig75:840052..840691Fucus serratus maleCDSF-serratus_M_contig75 840053..840691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18774.1

>prot_F-serratus_M_contig75.18774.1 ID=prot_F-serratus_M_contig75.18774.1|Name=mRNA_F-serratus_M_contig75.18774.1|organism=Fucus serratus male|type=polypeptide|length=213bp
MEAPGLQSAPSGTVLHTDATEAGVGPALSQVFATLEKCLFFGAKGSAPDF
WWVLRRVGGTDLCSSNAEVTGIRSNGRVTTDGVHQVKATVQPNPGPAAVD
GTMIRKPAEANEGSVPECLVFRISDLTRVQTGHGRCRAWTRGLLGLDGAA
VEKALQRAAGVAARFGGGLANFSAQEVWNDGAEGVKDNLGSVVSVRGKVD
IHHDGLKSGVNA*
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mRNA from alignment at F-serratus_M_contig75:838963..841404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18774.1 ID=mRNA_F-serratus_M_contig75.18774.1|Name=mRNA_F-serratus_M_contig75.18774.1|organism=Fucus serratus male|type=mRNA|length=2442bp|location=Sequence derived from alignment at F-serratus_M_contig75:838963..841404+ (Fucus serratus male)
TATCTCAAAGAGTTCCAGACATTCGCCGGCAGGGTCTCAGCAGCGGCCGA
CGAGAGGCTCAACCGCTTCGACGGTGGGACCTACAACGAGTTCTTCAGGC
TTTACTCTCAACGTTGATCGGCAAATGTGAAATCGATATCATCAATGCGC
ATGGAGGTTGGACAGGCGTCGATTGGATTTATGGACGACAAGTTTACTGA
GCCGAAAGATTTAGCCTTTATACTGTAATAGAGCCGGTCGCCCCGGTAGC
TCAGAGGTACCTCGTAACCCTCTGACACGTTGGGACGTGAGTTCGATCCC
GGCAAACGGGATTTTTCTCACTAAAAAACTAAGAAACAAAATAAAAATGC
CCAACGGGTGGAGAACGATTGATTCGTTAGTACACAAAATTCGACTTCAT
GGTCGACGAGGGAAAGGATTGGCTGAATCCTTCTCGCGGGAAAAATTGAG
GCACGCACCGCAGAAGAAAGGTGGATGGAAAATCCTGTGTGACCTTCCTT
CTGTGTGACCCCGGCTGGTACGTCCATTGATGTCCAGAATGGATGGGAAG
AAAACACACAACACACTGTACCAAGTACTACTGTAACAAGTAATCTTGAG
AGTCACTCCAGAGTCTAGCGGTGACGATGTCACTAATTAATAATAATAAA
AATTCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACTTGCATCGCGA
TAGAAATTGCAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTGTGAC
CACAGGCAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTGATTAAAA
ATTAAAATAAAAAAAATGAGGAGCCAAACCCAATCTTGTCCAGATACAGT
AATACCTCTCGTTTGCTGGCGATCGACTTCAGCTGCTGTTAAATCCGTCA
CACGAGAAGGACGCGCGTGCCTACGTGACCAAATTGCCGACCATTTTGGA
CCCACATGCACCCCTCTCTGTCGACAGTTCTCTCATTCCTCGAATCCTCA
CGACTCTGCTGTGCACCCCTTCAGACAGAAAGTGCAGCCGATGATGAGCA
ATGGCAGATCGACGCCCTCCTCGAGGAACTGCGACTGACGATGGAAGCGC
CGGGCCTGCAATCCGCACCTTCGGGGACAGTGCTCCATACTGACGCGACT
GAGGCGGGGGTTGGCCCGGCACTAAGCCAAGTGTTCGCAACTCTCGAGAA
GTGTCTCTTCTTCGGCGCCAAGGGTTCCGCACCCGATTTCTGGTGGGTCC
TTCGGCGAGTTGGTGGAACGGACCTTTGCAGCTCAAATGCCGAAGTTACA
GGAATCAGGAGTAATGGGAGAGTAACAACAGATGGCGTCCACCAAGTGAA
GGCGACAGTACAGCCAAACCCTGGACCCGCTGCGGTCGATGGTACAATGA
TTCGAAAACCGGCTGAAGCGAATGAAGGCAGCGTACCAGAATGTCTCGTT
TTTAGGATAAGCGATTTGACGCGCGTGCAGACGGGCCATGGGCGATGCCG
TGCCTGGACGCGAGGGCTTCTCGGTCTGGACGGCGCCGCTGTGGAGAAGG
CGCTGCAAAGAGCAGCGGGAGTCGCAGCTCGTTTCGGCGGAGGGCTTGCG
AATTTTAGTGCTCAGGAGGTTTGGAACGACGGAGCAGAGGGCGTGAAGGA
TAACCTTGGAAGCGTCGTGAGCGTGAGAGGGAAAGTCGATATACACCACG
ACGGTCTCAAATCAGGGGTCAATGCGTAACAGGCGGATCCCGACGCAGGC
GGCGGCAGTAGTGTCGCGTCGGATCCGCGCGTCACGTCTGCTGATGACAA
TCGCGATGGCTCCGCTTCACCGCCGCCGGGTAACCTCCCGCTGTGGCTGA
GACCGGGACCTCAGGGTGTGTCCATCCTTGAGGATCTGTGCAAGTTATGT
CGGGGCTTCCAGACCAGATTGAATTAAAGGGGACTGTTCGTGCGCCCATC
CCTGGATCACGCCTGGTTGGACCAGGAGAATATCCCCGCCGCGACCACTT
ACACCTGGCCCAGATTTCCGAGAGAGGAGCTGCGGTGCAGCGTGCGCGGC
GCTGGCCTCGCAGCAGCGAACGGGGAGTATTATCCGGTGACGACCGAGAA
AGATGAGATCGGCGGTAGGAGCCTAAAATTAGTCGGACCAAACGACTGCC
CGGTCTACCATCGAGACTACCCTCTCGGAGACGATCTAATCGTCAGCCCT
GTGACGCTGAGCAACGATCTCTCACAGAAATCTGGCGACACCGCGAGCGA
TGACGAGGGAGAAAGTACGACGTTCGACGAGACGTCGAGTGTAGCGGCTG
GGATTGGGACAGCGCGTTCGAAGGTTTTCGGCCATCATGCCTGAGCTTCC
GTCATCGGGCGATTGGATTGGGAAGGGAAGGTTAAACGTTATATCTTTGT
GACAACAGAGTGTGGCTTATGGCCCTCTCAGCCTCTCTGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig75:838963..841404+

>mRNA_F-serratus_M_contig75.18774.1 ID=mRNA_F-serratus_M_contig75.18774.1|Name=mRNA_F-serratus_M_contig75.18774.1|organism=Fucus serratus male|type=CDS|length=1278bp|location=Sequence derived from alignment at F-serratus_M_contig75:838963..841404+ (Fucus serratus male)
ATGGAAGCGCCGGGCCTGCAATCCGCACCTTCGGGGACAGTGCTCCATAC
TGACGCGACTGAGGCGGGGGTTGGCCCGGCACTAAGCCAAGTGTTCGCAA
CTCTCGAGAAGTGTCTCTTCTTCGGCGCCAAGGGTTCCGCACCCGATTTC
TGGTGGGTCCTTCGGCGAGTTGGTGGAACGGACCTTTGCAGCTCAAATGC
CGAAGTTACAGGAATCAGGAGTAATGGGAGAGTAACAACAGATGGCGTCC
ACCAAGTGAAGGCGACAGTACAGCCAAACCCTGGACCCGCTGCGGTCGAT
GGTACAATGATTCGAAAACCGGCTGAAGCGAATGAAGGCAGCGTACCAGA
ATGTCTCGTTTTTAGGATAAGCGATTTGACGCGCGTGCAGACGGGCCATG
GGCGATGCCGTGCCTGGACGCGAGGGCTTCTCGGTCTGGACGGCGCCGCT
GTGGAGAAGGCGCTGCAAAGAGCAGCGGGAGTCGCAGCTCGTTTCGGCGG
AGGGCTTGCGAATTTTAGTGCTCAGGAGGTTTGGAACGACGGAGCAGAGG
GCGTGAAGGATAACCTTGGAAGCGTCGTGAGCGTGAGAGGGAAAGTCGAT
ATACACCACGACGGTCTCAAATCAGGGGTCAATGCGTAAATGGAAGCGCC
GGGCCTGCAATCCGCACCTTCGGGGACAGTGCTCCATACTGACGCGACTG
AGGCGGGGGTTGGCCCGGCACTAAGCCAAGTGTTCGCAACTCTCGAGAAG
TGTCTCTTCTTCGGCGCCAAGGGTTCCGCACCCGATTTCTGGTGGGTCCT
TCGGCGAGTTGGTGGAACGGACCTTTGCAGCTCAAATGCCGAAGTTACAG
GAATCAGGAGTAATGGGAGAGTAACAACAGATGGCGTCCACCAAGTGAAG
GCGACAGTACAGCCAAACCCTGGACCCGCTGCGGTCGATGGTACAATGAT
TCGAAAACCGGCTGAAGCGAATGAAGGCAGCGTACCAGAATGTCTCGTTT
TTAGGATAAGCGATTTGACGCGCGTGCAGACGGGCCATGGGCGATGCCGT
GCCTGGACGCGAGGGCTTCTCGGTCTGGACGGCGCCGCTGTGGAGAAGGC
GCTGCAAAGAGCAGCGGGAGTCGCAGCTCGTTTCGGCGGAGGGCTTGCGA
ATTTTAGTGCTCAGGAGGTTTGGAACGACGGAGCAGAGGGCGTGAAGGAT
AACCTTGGAAGCGTCGTGAGCGTGAGAGGGAAAGTCGATATACACCACGA
CGGTCTCAAATCAGGGGTCAATGCGTAA
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