mRNA_F-serratus_M_contig75.18741.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig75.18741.1
Unique NamemRNA_F-serratus_M_contig75.18741.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: D7FQB7_ECTSI (UDG domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQB7_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 1.130e-118
Identity = 190/320 (59.38%), Postives = 227/320 (70.94%), Query Frame = 3
Query:  384 NQNPFDMFSFGTDVTATTP-KATTXXXXRPMPAIDSSADNTRAKKKTRRTKEPRAGQEAPKGLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDCPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSG------TALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALGSHISRRGS-WTRRKSTQ 1319
            ++NPF+ F+ G   + + P    T         +  S D+   KK   RT     GQ   KGL+EKYRSPG+PEWPLRLI+VGHNPSEKAWELGHYY NPSNRMWKLL++A I+P  FTASND+DCPITSGVGFTDVGFS PGT+SS+F + ELH+WR+ FYDRL AHAERAAATVAA+       +T R  +  +    G      TA    A I+DG P+++AFAGKRQ+EELFFDA A+ +A TKGGK G FRFGLQPADLRPPGWPFPA  T++FV+PSSSGAAAM NE RETPY  LG H+ + G  WT R+  Q
Sbjct:    7 DENPFNEFALGASPSGSGPIPGVTRARPAAARLLMDSLDSKPVKKM--RTSTGAKGQSTAKGLVEKYRSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHMLKSGGEWTHRRGQQ 324          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A4D9CYU0_9STRA (UDG domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYU0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 5.120e-56
Identity = 111/235 (47.23%), Postives = 134/235 (57.02%), Query Frame = 3
Query:  564 GLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDCPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVAL 1268
            GL EKY   G PE PLRL++VGHNPS  AW  GHYY+NPSNRMW LL    I+P  +TA +DD CP T G+GFTD+G+ +PGT S+ FK   LHAWR++ Y RL++HA RA A                                        P++VAF GKRQF ELFFD+ A         K+    +GLQ A  RP G+PF A  T +FVL SSSGAAAM+N  RE PY  L
Sbjct:   93 GLREKY---GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSAKFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNANETKLFVLTSSSGAAAMSNAAREMPYQEL 275          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: W7TJD2_9STRA (Uracil-dna glycosylase superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJD2_9STRA)

HSP 1 Score: 201 bits (511), Expect = 3.130e-55
Identity = 112/235 (47.66%), Postives = 135/235 (57.45%), Query Frame = 3
Query:  564 GLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDCPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVAL 1268
            GL EKY   G PE PLRL++VGHNPS  AW  GHYY+NPSNRMW LL    I+P  +TA +DD CP T G+GFTD+G+ +PGT SS+FK   LHAWR++ Y RL++HA RA A                                        P++VAF GKRQF ELFFD+ A         K+    +GLQ A  RP G+PF A  T +FVL SSSGAAAM+N  RE PY  L
Sbjct:  196 GLREKY---GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAP---------------------------------------PKIVAFTGKRQFRELFFDSKAY--------KSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQEL 378          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A383VAW5_TETOB (UDG domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VAW5_TETOB)

HSP 1 Score: 171 bits (433), Expect = 1.230e-44
Identity = 100/243 (41.15%), Postives = 127/243 (52.26%), Query Frame = 3
Query:  561 KGLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDC-PITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELF-FDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALGSHIS 1283
            KGL EK  +      PLRLI++GHNPSE AW  GHYY+NPSNRMW++L +A I P   +    DD  P   GVGFTDVG   PGT SS F   +   WR  FY RL AH + A+ ++  + G                             + G P++VAF GKR + EL   DA  + R       +     GLQP    PPGWP PA  T+V+VL S+SGAA M+N+ RE PY  L   ++
Sbjct:  115 KGLPEKLGAA-----PLRLILIGHNPSEHAWHTGHYYSNPSNRMWRILESAGITPPGVSGPEADDVMPAAVGVGFTDVGSGQPGTDSSLFTAADFQGWRAAFYARLAAHMKAASDSIGCSCG-----------------------------RCGAPRLVAFTGKRHYLELLNLDASGQQRRGKDRVASAAVTLGLQPQQQLPPGWPLPADKTEVWVLTSTSGAAPMSNQAREAPYRQLAQRLA 323          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A150H3T8_GONPE (UDG domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3T8_GONPE)

HSP 1 Score: 167 bits (422), Expect = 8.040e-44
Identity = 108/252 (42.86%), Postives = 131/252 (51.98%), Query Frame = 3
Query:  558 PKGLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDD-CPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELF-FDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALGSHISRRGSWTRR 1307
            P+G+ EK       + PLRL++VGHNPSE AW+ GHYY+NPSN MW++L +  I P     + DDD  P  +GVGF DVG  HPGT SS F      AW + FY RL AH  RAAA++                      T G           G P++VAF+GKRQF EL       R RA T         FG  P    P GWPFP R T+V+V  S+SGAAAM  E RE PY  L   ++R   W RR
Sbjct:   38 PRGVPEKLG-----DAPLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASIGC--------------------TCGLC---------GAPRLVAFSGKRQFLELLNVGRSGRDRAKT-------VEFG--PQSELPRGWPFP-RSTEVWVCSSTSGAAAMTKEQREGPYKRLAERLARE-EWPRR 244          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A836CAH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH3_9STRA)

HSP 1 Score: 165 bits (417), Expect = 5.130e-42
Identity = 105/264 (39.77%), Postives = 124/264 (46.97%), Query Frame = 3
Query:  564 GLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDCPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALN---------------------------GPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTD--VFVLPSSSGAAAMANETRETPYVAL 1268
            GL EK RSPG PEWPLR + VGHNPS  AW  GH+YA+PSN MW+LL  A + P   T  +D+  PI  GVGFTD+G   PGT S+ FKR  L  WR   ++RL  H  RA                                                              A  + GYP V+AF GKRQ+ ELFF       AL K     +  +GLQ A  RPP WPFP       V VL SSSGA+A++NE R  PY  L
Sbjct:   99 GLPEKLRSPGHPEWPLRCVCVGHNPSATAWAKGHFYAHPSNHMWRLLHAAGVSPRPLTCVDDERLPIELGVGFTDLGHDCPGTNSAAFKRDVLRTWRAGLFERLRGHVRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKLEMEDAAAAPERLGYPHVIAFTGKRQWRELFFGT-PEAEALAK-----KVDYGLQQA--RPPDWPFPPPPNGPLVVVLASSSGASALSNEARIAPYRLL 354          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A5J4XIV9_9CHLO (DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XIV9_9CHLO)

HSP 1 Score: 160 bits (405), Expect = 6.520e-41
Identity = 97/245 (39.59%), Postives = 123/245 (50.20%), Query Frame = 3
Query:  585 SPGQPE----WPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDCPIT-SGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALGSHISRRGSWTR 1304
            +PG PE     PLRLI+VGHNPS+ AW  GHYY+NPSN MW++L    I P+  T    DDC  + +GVGFTDVG   PGTISS F       W   FY+RL AH  RA+ ++    G                             K G P +VAF+GKRQ+ EL          LTK        F   P ++RP GWP P   T+V+V+ S+SGA+ M  E R  P+  L   + +  SW R
Sbjct:  106 APGVPEKLGDHPLRLIIVGHNPSDHAWRTGHYYSNPSNWMWRILIATRIAPSHVTGPQHDDCMASDAGVGFTDVGSGIPGTISSQFDSATFQGWGAGFYERLSAHMSRASDSIGCTCG-----------------------------KCGAPALVAFSGKRQWSELINTGRKGKNKLTK--------FATGPQNMRPEGWPLPDS-TEVWVMTSTSGASPMTTEARMAPWHELSKQLMQL-SWPR 311          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A7S3QS41_DUNTE (Hypothetical protein n=3 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QS41_DUNTE)

HSP 1 Score: 159 bits (401), Expect = 2.520e-40
Identity = 100/241 (41.49%), Postives = 126/241 (52.28%), Query Frame = 3
Query:  564 GLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASN-DDDCPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALGSHIS 1283
            GL EK    G   +PLRLI+VGHNPSE  W   H YA+ SN MW+LL    I P   T    DD  P + GVGFTDVG  HPGT SSDF       WR++FY+R+ AH                    +RA  E+   + G+          G P +VAF+GKR + EL  +AG R ++     K  +   G+QPA+L PPGWPFPA  T V V  S+SGA+ M    R  PY  L S ++
Sbjct:  102 GLGEKL---GGGSFPLRLIIVGHNPSEATWAASHVYAHKSNHMWRLLKQTGIAPPETTGPEADDTMPHSVGVGFTDVGTGHPGTKSSDFPTQVFLRWREDFYERMRAH--------------------MRAASESIGCSCGSC---------GAPALVAFSGKRHYMELL-NAGRRGKS-----KIPKVEIGVQPANLLPPGWPFPAS-TQVIVCCSTSGASPMTAAERLAPYQDLASKLA 303          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A835TBZ4_CHLIN (UDG domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBZ4_CHLIN)

HSP 1 Score: 160 bits (406), Expect = 4.170e-40
Identity = 100/239 (41.84%), Postives = 121/239 (50.63%), Query Frame = 3
Query:  585 SPGQPEW----PLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDD--CPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALGSHIS 1283
            +PG PE     PLRL++VGHNPSE AW  GHYY+NPSN +W LL    I P        DD   P  +GVGF DVG   PGT SS FK      W + FYDRL AH  RAAA++  + G                             + G P++VAF GKRQF EL          +  G    R R+G Q A   PPGWP PA   +V+V  S+SGAAAM  E RE PY  L + ++
Sbjct:  163 APGVPEKLGDAPLRLVIVGHNPSEHAWRSGHYYSNPSNHLWPLLRRTGIAPPDRIRGPQDDGLMPAAAGVGFLDVGCGVPGTDSSQFKSEVFEGWSRAFYDRLRAHMRRAAASIGCSCG-----------------------------RCGAPRLVAFTGKRQFLEL----------MNVGAGPARPRYGRQAA--LPPGWPLPAA-CEVWVCSSTSGAAAMTREAREQPYAQLAARLA 359          
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Match: A0A482SFZ9_9ARCH (UDG domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFZ9_9ARCH)

HSP 1 Score: 157 bits (396), Expect = 1.130e-39
Identity = 100/240 (41.67%), Postives = 120/240 (50.00%), Query Frame = 3
Query:  555 APKGLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELGHYYANPSNRMWKLLATADIVPASFTASNDDDCPITSGVGFTDVGFSHPGTISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEENTEPTSGTALNGPADIKDGY-PQVVAFAGKRQFEELFFDAGARTRALTKGGKAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYVALG 1271
            A KGL E Y +PG  E  LRL+++GHNPS +AW  GHYYANPSNRMW LL  A IVP+ F A++D  CP   GVGFTDV F    T SS F    L A    F+ RL+AH  R                       N             +    Y P ++AFAG RQ+  LF  +                RFGLQ    RPP WP     + VF+LPS+SGAAAM  + RE PY+ LG
Sbjct:  104 AAKGLGEMYCTPGTEEKRLRLLIIGHNPSHQAWTKGHYYANPSNRMWPLLTKAGIVPSHFNANSDLLCPSVCGVGFTDVMFGVGETDSSLFSDEALRACTAPFFARLVAHCHRV--------------------RNNHHXXXXXXXXXXXEDAAAYSPLILAFAGVRQWRCLFPPSSKWET-----------RFGLQTN--RPPNWPPELASSQVFLLPSTSGAAAMTTQQREEPYIQLG 310          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig75.18741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB7_ECTSI1.130e-11859.38UDG domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CYU0_9STRA5.120e-5647.23UDG domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TJD2_9STRA3.130e-5547.66Uracil-dna glycosylase superfamily n=1 Tax=Nannoch... [more]
A0A383VAW5_TETOB1.230e-4441.15UDG domain-containing protein n=1 Tax=Tetradesmus ... [more]
A0A150H3T8_GONPE8.040e-4442.86UDG domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A836CAH3_9STRA5.130e-4239.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4XIV9_9CHLO6.520e-4139.59DNA glycosylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2... [more]
A0A7S3QS41_DUNTE2.520e-4041.49Hypothetical protein n=3 Tax=Dunaliella tertiolect... [more]
A0A835TBZ4_CHLIN4.170e-4041.84UDG domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A482SFZ9_9ARCH1.130e-3941.67UDG domain-containing protein n=1 Tax=archaeon Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig75contigF-serratus_M_contig75:67638..71453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.9
Seed ortholog evalue6.5e-99
Seed eggNOG ortholog2880.D7FQB7
KEGG koko:K20813
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
EggNOG OGs2CGCP@1,2RYQ9@2759
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Ec32 orthologEc-01_006710.1
EC3.2.2.29
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons5
Model size1745
Cds size1263
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932258.7259007-UTR-F-serratus_M_contig75:67637..680571622932258.7259007-UTR-F-serratus_M_contig75:67637..68057Fucus serratus maleUTRF-serratus_M_contig75 67638..68057 -
1690964222.384743-UTR-F-serratus_M_contig75:67637..680571690964222.384743-UTR-F-serratus_M_contig75:67637..68057Fucus serratus maleUTRF-serratus_M_contig75 67638..68057 -
1622932258.8124592-UTR-F-serratus_M_contig75:70220..702241622932258.8124592-UTR-F-serratus_M_contig75:70220..70224Fucus serratus maleUTRF-serratus_M_contig75 70221..70224 -
1690964222.441998-UTR-F-serratus_M_contig75:70220..702241690964222.441998-UTR-F-serratus_M_contig75:70220..70224Fucus serratus maleUTRF-serratus_M_contig75 70221..70224 -
1622932258.8268626-UTR-F-serratus_M_contig75:71395..714531622932258.8268626-UTR-F-serratus_M_contig75:71395..71453Fucus serratus maleUTRF-serratus_M_contig75 71396..71453 -
1690964222.4539268-UTR-F-serratus_M_contig75:71395..714531690964222.4539268-UTR-F-serratus_M_contig75:71395..71453Fucus serratus maleUTRF-serratus_M_contig75 71396..71453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932258.7381592-CDS-F-serratus_M_contig75:68057..683271622932258.7381592-CDS-F-serratus_M_contig75:68057..68327Fucus serratus maleCDSF-serratus_M_contig75 68058..68327 -
1690964222.397991-CDS-F-serratus_M_contig75:68057..683271690964222.397991-CDS-F-serratus_M_contig75:68057..68327Fucus serratus maleCDSF-serratus_M_contig75 68058..68327 -
1622932258.7554786-CDS-F-serratus_M_contig75:68669..689331622932258.7554786-CDS-F-serratus_M_contig75:68669..68933Fucus serratus maleCDSF-serratus_M_contig75 68670..68933 -
1690964222.4079974-CDS-F-serratus_M_contig75:68669..689331690964222.4079974-CDS-F-serratus_M_contig75:68669..68933Fucus serratus maleCDSF-serratus_M_contig75 68670..68933 -
1622932258.7712853-CDS-F-serratus_M_contig75:69211..694191622932258.7712853-CDS-F-serratus_M_contig75:69211..69419Fucus serratus maleCDSF-serratus_M_contig75 69212..69419 -
1690964222.4177103-CDS-F-serratus_M_contig75:69211..694191690964222.4177103-CDS-F-serratus_M_contig75:69211..69419Fucus serratus maleCDSF-serratus_M_contig75 69212..69419 -
1622932258.7898972-CDS-F-serratus_M_contig75:69699..702201622932258.7898972-CDS-F-serratus_M_contig75:69699..70220Fucus serratus maleCDSF-serratus_M_contig75 69700..70220 -
1690964222.4282706-CDS-F-serratus_M_contig75:69699..702201690964222.4282706-CDS-F-serratus_M_contig75:69699..70220Fucus serratus maleCDSF-serratus_M_contig75 69700..70220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig75.18741.1prot_F-serratus_M_contig75.18741.1Fucus serratus malepolypeptideF-serratus_M_contig75 68058..70220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig75.18741.1

>prot_F-serratus_M_contig75.18741.1 ID=prot_F-serratus_M_contig75.18741.1|Name=mRNA_F-serratus_M_contig75.18741.1|organism=Fucus serratus male|type=polypeptide|length=421bp
MPCLCVSPPSGFSSPTLRRPHLSSLPAYRICCLLTLVHLQSASFPRRCPE
TGKSSTAPGLCEPQTFKPLAFSLPLSCQSPEVSASRARRGGVHTTDTTEG
RLPMPSPNQNPFDMFSFGTDVTATTPKATTTPAARPMPAIDSSADNTRAK
KKTRRTKEPRAGQEAPKGLLEKYRSPGQPEWPLRLIVVGHNPSEKAWELG
HYYANPSNRMWKLLATADIVPASFTASNDDDCPITSGVGFTDVGFSHPGT
ISSDFKRTELHAWRQNFYDRLIAHAERAAATVAAANGERKMASTLRADEE
NTEPTSGTALNGPADIKDGYPQVVAFAGKRQFEELFFDAGARTRALTKGG
KAGRFRFGLQPADLRPPGWPFPARFTDVFVLPSSSGAAAMANETRETPYV
ALGSHISRRGSWTRRKSTQR*
back to top

mRNA from alignment at F-serratus_M_contig75:67638..71453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig75.18741.1 ID=mRNA_F-serratus_M_contig75.18741.1|Name=mRNA_F-serratus_M_contig75.18741.1|organism=Fucus serratus male|type=mRNA|length=3816bp|location=Sequence derived from alignment at F-serratus_M_contig75:67638..71453- (Fucus serratus male)
TTGTTACAAGCTGGACTGAAGAAAGAGAGGGAGAGAAAGAGGGTGAAAGG CGTTGCCTGTGAGTATAGTGGATCGATATAGTATTCCCTCCTACAGCTTT GAGGGTAGACCCCGTTATGCAATTTTGCCGATTTGTTCAGTACTTTGAAT GGAAGGTCGCACGATCCCACGATCTGTTACTAATTATCAAAAGATTATAC TTCGAAGCACTACTTGAAGAACATGTGTAGCTCTACTACCTACTGAACGT ATCTAAACCTTGTGGGCATTATCTGGGCACAAAGCTCTACTCTGTCCTTT GACTCTGGAAACACAATCTCCCTGCTTCACTAACCCCCGAGGTAGAGGAA GGGAAGAGATGATTTTTAACGTCGTTGGTTTGTTTTACTGTACATGGCCC GGACGGTCTGGATGCTAGGAAGATTCCGACGCGTTTTTCGTCACACTGTG TACGAAAACTGGTATGATAGGCGCCAACGATGGGCAATTTCGCAGTTCAA TTTCACTTCCTACAAAATAAGTTGGTGTATTTTTAGCCTATGAAAACAAC AATTTGATGCGTATTTAGTGATCTTGTTGTAAAATGTAAATATATTTATT TCTCTTTATTCACCAATGACAAAATTGTAACATTGCCTGTGTTCTAGACT ACTGTATACTGGTACCTGGTAAGGCCTTATTGTATAAGGGTCGATGTACT ATCATTACTGTATATAATTAGACTATAAACCTATTCTATGATGTACTAAA AATGTTTTGGTTTTGTTTCCTTTTGTTGTTGTCTGGTGTCCCTGCATGGC GATTAGACTAATGTAAGTGTACAGCATAACGGTGGCTTTCTACCCGGTAT TATACTGTTGACCCAATGTTACTACCATCGGGGAACCCGTTGAAATGCCA TGAAGAGGTTTCGTATTTGCAGCCTATGATCATACCTCCACGTTTTGACA TTTCCCCCCCTGACTCGGTGGGGTATGCTCAGAACGTCTATTATAGATGC GTTCAGATTCTTCTTTAAAAGTACTCTTGTGATGTGTACCTGCTGGTAGT ACAGTACAATCCTGGCACACGAAAATCACCGACTGCACCTCTAAGCTGCT GTTGTTGTTGTTTATCTCACATTTGACTGATCCGCTACGAATCCAGCCGT GGTCACTAGACGGAACTAAACCAAATCAAACCGGTAATACGTTTCTGTTA CCGATTTTTTGTTTGGTTCATCTATCCAGGTACATGCCTTGCTTGTGTGT CTCGCCACCGAGTGGGTTCAGCAGTCCCACTCTGCGTCGGCCGCATCTCT CATCACTTCCAGCGTACCGAATCTGTTGCTTGCTCACGCTCGTCCATCTC CAATCTGCTAGCTTTCCGCGGCGGTGCCCCGAGACTGGGAAAAGCTCCAC AGCGCCGGGGCTGTGCGAACCCCAAACCTTCAAACCGCTCGCTTTCTCAC TACCCCTCTCTTGTCAGTCGCCAGAAGTCAGCGCTTCCCGTGCGAGGAGG GGTGGGGTGCACACGACAGACACGACAGAAGGAAGACTTCCTATGCCTTC ACCAAACCAAAATCCCTTCGACATGTTTTCCTTCGGAACGGATGTCACTG CAACTACTCCCAAGGCGACGACCACCCCAGCTGCACGTCCCATGCCTGCT ATTGATAGTTCCGCTGATAACACGCGCGCTAAGAAGAAAACACGTCGCAC GAAGGAGCCTCGCGCCGGACAGGAGGCGCCAAAGGGTCTCCTGGAGAAGT ACAGGTGACTAACACGAGAGGATTCGTGTGTACAGTAGTGACGAGGTAGA CCGGTGCATGCGCGATCGATGACTTTCAGCTGAAGACAACATAATCCGCT CTTTGAAACTCAACGGTCTGCGAGTATTTACATTGCCTTTCTTCTCACGA TGCTCAGCCCTATTGTACCATATATTGATGGAACGAATATATATATACAT ATATATATATATATATCAATTGCGTGTCGCCGTCGCGAATATGCTTGCTT GCTCTGCGGCGAAAACCACACTTGAGTACACAAGATCCCCGGGGCAGCCG GAGTGGCCGTTGAGGCTGATCGTTGTGGGTCACAACCCGAGCGAGAAGGC CTGGGAGCTCGGCCACTACTACGCGAATCCGTCGAACCGCATGTGGAAGC TTCTGGCAACCGCTGACATCGTACCGGCTAGCTTTACCGCTAGCAACGAT GACGATTGCCCGATAACCTCCGGCGTGGGCTTCACAGACGTGGTGGGTTT TCCTTATGAGAACTTCATCCGGATGATGGACACCTCGATCGCGCTCTTTG TTTGGTTATAACCACACTCACGTCACCCGACCGTTTCTCCTGCAAGTGTC GGCGCAGCAGTGATTATTGGCCGCCGTAATCGGCCTTCGACGTCGACGGC GTTTGCCTTGCTGAGCGAGATACAGTAGTGATCGCAAGTGGCTTCCATGC AAAGCGGGAGACGTCGGTAGGACGTTACTCCTATTAATAGTATTACTGCG CCTGTGCCATCGCCCAGCAGGGATTTTCGCACCCTGGTACGATCTCCAGC GACTTCAAAAGGACAGAGCTACACGCCTGGCGACAGAATTTCTACGATCG TCTGATTGCCCACGCCGAGCGAGCAGCGGCGACGGTAGCGGCTGCCAACG GGGAAAGGAAAATGGCATCAACCCTTCGAGCGGACGAGGAGAACACCGAG CCAACGTCGGGAACCGCTCTAAATGGCCCCGCGGACATAAAGGATGGATA CCCTCAAGTCGTGGCCTTTGCCGGCAAGCGACAAGTAAGCAATGGTGCAA TCATCGCCCCTCCTACCTTCCCCGCGCGGTTTTCCCAGTGGTAATATGGT GTCTACGCTAGGGGAAAGGGGGAGGGGGGCGAGTCGTTCAACATCGTCCC TCATCGACGTATTCTTCTGCATTCCTCTAAAGTCCACACCACTATATTTA CTGCTGATGTGCCCATCGTGCTGATTGTATACTATAGTATATTTATTTCA AGGTTGTTGTTGACGGCCACACCGATCATCCCCATACCGGACTGCTCACG CGCACCAATTTTTTTCGGCTTGACAGCCTGGTGTTCTTACGCCTCTTCGA TTGATCGATGCGCGCGTGCCCAACAGTTCGAGGAACTTTTTTTTGACGCC GGCGCGAGAACGAGGGCGCTCACCAAGGGGGGCAAGGCCGGGCGGTTCCG GTTCGGTCTACAGCCGGCCGACCTCCGCCCGCCGGGTTGGCCGTTCCCCG CGCGGTTCACGGACGTCTTTGTTCTGCCAAGCAGCAGCGGCGCCGCGGCA ATGGCGAACGAAACGCGTGAGACCCCCTACGTGGCGCTTGGGAGCCACAT ATCTCGACGAGGGAGTTGGACACGCCGCAAATCAACGCAGCGATAATGTC GAGATTCGCAAGGAGTTGCAGAGAGTTGAGGCGCTCCCCACGGAACCTCG TACGGGCTTTCATATGTTATCTATTTTTAAGTATATGACCGGTGGTAAGA GTGCGCCGTTCCAATCCCAACATATTTTTCTATAAAATCAAACTAATAAT ACTGATAGGTTTTAGCGCCTAAAACGTGTGTTGGAATTATTAATTTCCTG CCTGTTGGTGACTTTCATAGCTAGTTTAGTACAGTACCGGCTGTCTGTCG GTTGTTGTTTGTCTGGTACATATCCTCCCGTGTTTGCCCTGTGTTGTCTG TAAAGCTGCATATTAGAGACCAAACCACCTCGAAAAAAAAAGCACTCTGG TGCTCATGATTAACCGCGAGTCTAGCCTTGGCGAATCCTCACGACAGCTG TCGTTTTAAATAATAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig75:67638..71453-

>mRNA_F-serratus_M_contig75.18741.1 ID=mRNA_F-serratus_M_contig75.18741.1|Name=mRNA_F-serratus_M_contig75.18741.1|organism=Fucus serratus male|type=CDS|length=2526bp|location=Sequence derived from alignment at F-serratus_M_contig75:67638..71453- (Fucus serratus male)
ATGCCTTGCTTGTGTGTCTCGCCACCGAGTGGGTTCAGCAGTCCCACTCT
GCGTCGGCCGCATCTCTCATCACTTCCAGCGTACCGAATCTGTTGCTTGC
TCACGCTCGTCCATCTCCAATCTGCTAGCTTTCCGCGGCGGTGCCCCGAG
ACTGGGAAAAGCTCCACAGCGCCGGGGCTGTGCGAACCCCAAACCTTCAA
ACCGCTCGCTTTCTCACTACCCCTCTCTTGTCAGTCGCCAGAAGTCAGCG
CTTCCCGTGCGAGGAGGGGTGGGGTGCACACGACAGACACGACAGAAGGA
AGACTTCCTATGCCTTCACCAAACCAAAATCCCTTCGACATGTTTTCCTT
CGGAACGGATGTCACTGCAACTACTCCCAAGGCGACGACCACCCCAGCTG
CACGTCCCATGCCTGCTATTGATAGTTCCGCTGATAACACGCGCGCTAAG
AAGAAAACACGTCGCACGAAGGAGCCTCGCGCCGGACAGGAGGCGCCAAA
GGGTCTCCTGGAGAAGTACAGATGCCTTGCTTGTGTGTCTCGCCACCGAG
TGGGTTCAGCAGTCCCACTCTGCGTCGGCCGCATCTCTCATCACTTCCAG
CGTACCGAATCTGTTGCTTGCTCACGCTCGTCCATCTCCAATCTGCTAGC
TTTCCGCGGCGGTGCCCCGAGACTGGGAAAAGCTCCACAGCGCCGGGGCT
GTGCGAACCCCAAACCTTCAAACCGCTCGCTTTCTCACTACCCCTCTCTT
GTCAGTCGCCAGAAGTCAGCGCTTCCCGTGCGAGGAGGGGTGGGGTGCAC
ACGACAGACACGACAGAAGGAAGACTTCCTATGCCTTCACCAAACCAAAA
TCCCTTCGACATGTTTTCCTTCGGAACGGATGTCACTGCAACTACTCCCA
AGGCGACGACCACCCCAGCTGCACGTCCCATGCCTGCTATTGATAGTTCC
GCTGATAACACGCGCGCTAAGAAGAAAACACGTCGCACGAAGGAGCCTCG
CGCCGGACAGGAGGCGCCAAAGGGTCTCCTGGAGAAGTACAGATCCCCGG
GGCAGCCGGAGTGGCCGTTGAGGCTGATCGTTGTGGGTCACAACCCGAGC
GAGAAGGCCTGGGAGCTCGGCCACTACTACGCGAATCCGTCGAACCGCAT
GTGGAAGCTTCTGGCAACCGCTGACATCGTACCGGCTAGCTTTACCGCTA
GCAACGATGACGATTGCCCGATAACCTCCGGCGTGGGCTTCACAGACGTG
ATCCCCGGGGCAGCCGGAGTGGCCGTTGAGGCTGATCGTTGTGGGTCACA
ACCCGAGCGAGAAGGCCTGGGAGCTCGGCCACTACTACGCGAATCCGTCG
AACCGCATGTGGAAGCTTCTGGCAACCGCTGACATCGTACCGGCTAGCTT
TACCGCTAGCAACGATGACGATTGCCCGATAACCTCCGGCGTGGGCTTCA
CAGACGTGGGATTTTCGCACCCTGGTACGATCTCCAGCGACTTCAAAAGG
ACAGAGCTACACGCCTGGCGACAGAATTTCTACGATCGTCTGATTGCCCA
CGCCGAGCGAGCAGCGGCGACGGTAGCGGCTGCCAACGGGGAAAGGAAAA
TGGCATCAACCCTTCGAGCGGACGAGGAGAACACCGAGCCAACGTCGGGA
ACCGCTCTAAATGGCCCCGCGGACATAAAGGATGGATACCCTCAAGTCGT
GGCCTTTGCCGGCAAGCGACAAGGATTTTCGCACCCTGGTACGATCTCCA
GCGACTTCAAAAGGACAGAGCTACACGCCTGGCGACAGAATTTCTACGAT
CGTCTGATTGCCCACGCCGAGCGAGCAGCGGCGACGGTAGCGGCTGCCAA
CGGGGAAAGGAAAATGGCATCAACCCTTCGAGCGGACGAGGAGAACACCG
AGCCAACGTCGGGAACCGCTCTAAATGGCCCCGCGGACATAAAGGATGGA
TACCCTCAAGTCGTGGCCTTTGCCGGCAAGCGACAATTCGAGGAACTTTT
TTTTGACGCCGGCGCGAGAACGAGGGCGCTCACCAAGGGGGGCAAGGCCG
GGCGGTTCCGGTTCGGTCTACAGCCGGCCGACCTCCGCCCGCCGGGTTGG
CCGTTCCCCGCGCGGTTCACGGACGTCTTTGTTCTGCCAAGCAGCAGCGG
CGCCGCGGCAATGGCGAACGAAACGCGTGAGACCCCCTACGTGGCGCTTG
GGAGCCACATATCTCGACGAGGGAGTTGGACACGCCGCAAATCAACGCAG
CGATAATTCGAGGAACTTTTTTTTGACGCCGGCGCGAGAACGAGGGCGCT
CACCAAGGGGGGCAAGGCCGGGCGGTTCCGGTTCGGTCTACAGCCGGCCG
ACCTCCGCCCGCCGGGTTGGCCGTTCCCCGCGCGGTTCACGGACGTCTTT
GTTCTGCCAAGCAGCAGCGGCGCCGCGGCAATGGCGAACGAAACGCGTGA
GACCCCCTACGTGGCGCTTGGGAGCCACATATCTCGACGAGGGAGTTGGA
CACGCCGCAAATCAACGCAGCGATAA
back to top