mRNA_F-serratus_M_contig749.18732.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig749.18732.1
Unique NamemRNA_F-serratus_M_contig749.18732.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig749contigF-serratus_M_contig749:260002..260638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size637
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932255.3654253-CDS-F-serratus_M_contig749:260001..2604751622932255.3654253-CDS-F-serratus_M_contig749:260001..260475Fucus serratus maleCDSF-serratus_M_contig749 260002..260475 +
1690964220.6215932-CDS-F-serratus_M_contig749:260001..2604751690964220.6215932-CDS-F-serratus_M_contig749:260001..260475Fucus serratus maleCDSF-serratus_M_contig749 260002..260475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932255.381343-UTR-F-serratus_M_contig749:260475..2606381622932255.381343-UTR-F-serratus_M_contig749:260475..260638Fucus serratus maleUTRF-serratus_M_contig749 260476..260638 +
1690964220.631511-UTR-F-serratus_M_contig749:260475..2606381690964220.631511-UTR-F-serratus_M_contig749:260475..260638Fucus serratus maleUTRF-serratus_M_contig749 260476..260638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig749.18732.1prot_F-serratus_M_contig749.18732.1Fucus serratus malepolypeptideF-serratus_M_contig749 260002..260475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig749.18732.1

>prot_F-serratus_M_contig749.18732.1 ID=prot_F-serratus_M_contig749.18732.1|Name=mRNA_F-serratus_M_contig749.18732.1|organism=Fucus serratus male|type=polypeptide|length=158bp
VVYRFLRYTKFTGSPPNSNRLVTVLPRAAPSTHETRFRPPFIPVTISNSD
LHLSFGPEPTQQFRHYPPARHTRGTWGPLLNATRPTGLRFPPPLRLPSPA
RPLPIPGSPLIASPVISPSCATPASMQSPLGPGHPIFFCPHDNFLLYKSL
LSLHAPA*
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mRNA from alignment at F-serratus_M_contig749:260002..260638+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig749.18732.1 ID=mRNA_F-serratus_M_contig749.18732.1|Name=mRNA_F-serratus_M_contig749.18732.1|organism=Fucus serratus male|type=mRNA|length=637bp|location=Sequence derived from alignment at F-serratus_M_contig749:260002..260638+ (Fucus serratus male)
GTTGTGTATCGCTTTTTAAGGTACACCAAATTCACGGGTTCTCCACCCAA
TTCCAACAGGCTCGTCACAGTTCTTCCGCGGGCCGCCCCATCCACCCATG
AGACCCGCTTTCGCCCGCCGTTCATCCCTGTCACCATATCAAACTCTGAT
CTTCACCTTTCCTTCGGCCCTGAACCAACCCAACAGTTTCGTCATTACCC
TCCCGCACGGCACACACGCGGTACGTGGGGCCCGCTGCTGAACGCCACTC
GCCCGACTGGCCTCCGATTCCCTCCACCCTTAAGGTTACCCTCTCCCGCA
CGACCTCTTCCTATTCCTGGTTCTCCGCTCATTGCTAGCCCCGTTATAAG
CCCATCGTGTGCCACCCCTGCGTCCATGCAATCCCCGCTTGGTCCTGGGC
ATCCGATCTTCTTCTGCCCCCATGACAACTTCCTCCTATATAAGTCTCTG
CTCTCACTCCACGCGCCTGCATAATAACCTGCGAGTCGAGGGTTGGATAT
GGCCCGGCTCTCCCCAACCCACGGCGTCGCCAACCCCCCCAACGTATCCT
CGTTTCAGCGGCACATTTTGACTGTGGCATCCCTGCTCAGCGCCGCCTCG
TTCAACCCACCGCGCAGGCCTGCCGCCTATACTGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig749:260002..260638+

>mRNA_F-serratus_M_contig749.18732.1 ID=mRNA_F-serratus_M_contig749.18732.1|Name=mRNA_F-serratus_M_contig749.18732.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig749:260002..260638+ (Fucus serratus male)
GTTGTGTATCGCTTTTTAAGGTACACCAAATTCACGGGTTCTCCACCCAA
TTCCAACAGGCTCGTCACAGTTCTTCCGCGGGCCGCCCCATCCACCCATG
AGACCCGCTTTCGCCCGCCGTTCATCCCTGTCACCATATCAAACTCTGAT
CTTCACCTTTCCTTCGGCCCTGAACCAACCCAACAGTTTCGTCATTACCC
TCCCGCACGGCACACACGCGGTACGTGGGGCCCGCTGCTGAACGCCACTC
GCCCGACTGGCCTCCGATTCCCTCCACCCTTAAGGTTACCCTCTCCCGCA
CGACCTCTTCCTATTCCTGGTTCTCCGCTCATTGCTAGCCCCGTTATAAG
CCCATCGTGTGCCACCCCTGCGTCCATGCAATCCCCGCTTGGTCCTGGGC
ATCCGATCTTCTTCTGCCCCCATGACAACTTCCTCCTATATAAGTCTCTG
CTCTCACTCCACGCGCCTGCATAAGTTGTGTATCGCTTTTTAAGGTACAC
CAAATTCACGGGTTCTCCACCCAATTCCAACAGGCTCGTCACAGTTCTTC
CGCGGGCCGCCCCATCCACCCATGAGACCCGCTTTCGCCCGCCGTTCATC
CCTGTCACCATATCAAACTCTGATCTTCACCTTTCCTTCGGCCCTGAACC
AACCCAACAGTTTCGTCATTACCCTCCCGCACGGCACACACGCGGTACGT
GGGGCCCGCTGCTGAACGCCACTCGCCCGACTGGCCTCCGATTCCCTCCA
CCCTTAAGGTTACCCTCTCCCGCACGACCTCTTCCTATTCCTGGTTCTCC
GCTCATTGCTAGCCCCGTTATAAGCCCATCGTGTGCCACCCCTGCGTCCA
TGCAATCCCCGCTTGGTCCTGGGCATCCGATCTTCTTCTGCCCCCATGAC
AACTTCCTCCTATATAAGTCTCTGCTCTCACTCCACGCGCCTGCATAA
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