mRNA_F-serratus_M_contig749.18737.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig749.18737.1
Unique NamemRNA_F-serratus_M_contig749.18737.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig749contigF-serratus_M_contig749:309221..311801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size561
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig749.18737.1prot_F-serratus_M_contig749.18737.1Fucus serratus malepolypeptideF-serratus_M_contig749 309953..311801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932255.1694243-UTR-F-serratus_M_contig749:309220..3093661622932255.1694243-UTR-F-serratus_M_contig749:309220..309366Fucus serratus maleUTRF-serratus_M_contig749 309221..309366 +
1690964220.5457332-UTR-F-serratus_M_contig749:309220..3093661690964220.5457332-UTR-F-serratus_M_contig749:309220..309366Fucus serratus maleUTRF-serratus_M_contig749 309221..309366 +
1622932255.2086587-UTR-F-serratus_M_contig749:309929..3099521622932255.2086587-UTR-F-serratus_M_contig749:309929..309952Fucus serratus maleUTRF-serratus_M_contig749 309930..309952 +
1690964220.5569131-UTR-F-serratus_M_contig749:309929..3099521690964220.5569131-UTR-F-serratus_M_contig749:309929..309952Fucus serratus maleUTRF-serratus_M_contig749 309930..309952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932255.2288775-CDS-F-serratus_M_contig749:309952..3101141622932255.2288775-CDS-F-serratus_M_contig749:309952..310114Fucus serratus maleCDSF-serratus_M_contig749 309953..310114 +
1690964220.5795488-CDS-F-serratus_M_contig749:309952..3101141690964220.5795488-CDS-F-serratus_M_contig749:309952..310114Fucus serratus maleCDSF-serratus_M_contig749 309953..310114 +
1622932255.2451618-CDS-F-serratus_M_contig749:310876..3109721622932255.2451618-CDS-F-serratus_M_contig749:310876..310972Fucus serratus maleCDSF-serratus_M_contig749 310877..310972 +
1690964220.591527-CDS-F-serratus_M_contig749:310876..3109721690964220.591527-CDS-F-serratus_M_contig749:310876..310972Fucus serratus maleCDSF-serratus_M_contig749 310877..310972 +
1622932255.2814434-CDS-F-serratus_M_contig749:311402..3114871622932255.2814434-CDS-F-serratus_M_contig749:311402..311487Fucus serratus maleCDSF-serratus_M_contig749 311403..311487 +
1690964220.6028972-CDS-F-serratus_M_contig749:311402..3114871690964220.6028972-CDS-F-serratus_M_contig749:311402..311487Fucus serratus maleCDSF-serratus_M_contig749 311403..311487 +
1622932255.306411-CDS-F-serratus_M_contig749:311754..3118011622932255.306411-CDS-F-serratus_M_contig749:311754..311801Fucus serratus maleCDSF-serratus_M_contig749 311755..311801 +
1690964220.6122437-CDS-F-serratus_M_contig749:311754..3118011690964220.6122437-CDS-F-serratus_M_contig749:311754..311801Fucus serratus maleCDSF-serratus_M_contig749 311755..311801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig749.18737.1

>prot_F-serratus_M_contig749.18737.1 ID=prot_F-serratus_M_contig749.18737.1|Name=mRNA_F-serratus_M_contig749.18737.1|organism=Fucus serratus male|type=polypeptide|length=130bp
MSAPEEIISGSEAEATGSEVEGIKAENLDASSVEEKKLRKRLLRMFRLGK
EKQEALEIKGSEPDVKMPEVSGDISPSASGDVSKPSAPVGSVAVPERNVD
IPSVKTGMYPPSVKGHAPVGGVSVTASNVR
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mRNA from alignment at F-serratus_M_contig749:309221..311801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig749.18737.1 ID=mRNA_F-serratus_M_contig749.18737.1|Name=mRNA_F-serratus_M_contig749.18737.1|organism=Fucus serratus male|type=mRNA|length=2581bp|location=Sequence derived from alignment at F-serratus_M_contig749:309221..311801+ (Fucus serratus male)
CGTCTGTCGACGGCAAGGTAGACGCCTCCACCCCTGATGTGAACGTTGTC
GTGTCGGAACCACCGGTGGACGTACCGTCTGTCGACGGCAAGGTAGACGC
CTCCACCCCTGATGTGAACGTTGTCGTGTCGGAACCACCGGTGGACGTAC
CGTCTGTCGACGGCAAGGTAGACGCCTCCACCCCTGATGTGAACGTTGTC
GTGTCGGAACCACCGGTGGACGTACCGTCTGTCGACGGCAGGGTAGACGC
CTCCACCCCTGATGTGAACGTTGTCGTGTCGGAACCACCGGTGGACGTAC
CGTCTGTCGACGGCAAGGTAGATGCCTCCACCCCTGATGTGAACGTGTGT
GTCGGAACCACCGGTGGACGTACCGTCTGTCGACGGCAAGGTAGACGCCT
CCACCCCTGATGTGAAGGTTGTCGTGTCGGAACCACCGGTGGACGTACCG
TCTGTGGGCGCCGAGGCGGACGTCTCCACCCCTGATGTGAAGGTTGTCGT
GTCGGCACCGTCGGTGGACGTCTGTGAAACTGTCTCCGAAGTGTCTGGCG
GAATACCCGCTGTCCGTGACGTTAGGGTGTCCACACCTCCGGCAGTTCCG
GGCATCAAGCCACCCGACGTGTCGACGGAAGTACCTGCTGTCCGCGAGGT
TAAGGTGTCCACACCTCCGGCAATTCCGGGCATCAAGCCACCCGACCTGT
CTACGGAAGTACCTGAGGTCGGTAATTCAGGCATGTCGGCACCAGAAGAG
ATCATATCGGGGTCGGAAGCGGAAGCCACTGGTTCAGAGGTTGAGGGAAT
AAAAGCGGAGAACCTCGATGCGTCATCGGTGGAGGAGAAGAAGCTAAGGA
AGCGTCTTTTAAGAATGTTCCGATTGGGCAAGGAAAAACAGGAGGTAAGC
AAGTACAAAGCTCCTCAGCAGGATATACTGGGTGAGGAAGTTCACTTTCA
AGGACAAGTTCATGCATGAAAGAGCTCACGTGTAAATCGTTTGTGTAGTA
ATTCTCATACTTTGGCACACGCTTTGTCAAAATTTTAGTCATTGGCGCGG
GTTTCGCAAGATGCCGGAAGTGGAGGTAGTCTCCGATGTAAAAGGTGCCC
GAGGTTTCCGCTGAGATATCGGCTCTTTAAGAGAGCGGCGACATGTCAAA
GCCCTCGAGGAACCGGTGGCATACCTACTTGACAATGTGTGGGTATTGTA
AGAGTTGATTATTGCACGCTAAACAATTTCTTAGCGACTTCACTGCAAGT
CACAGGAACGGTAGTTAATGCGCCAATGCCACTTGCTTACCGCGTTTGCC
CATTTATCATGGGGTGCGTCATTGTCTGACCGCGGTTCCATCACGTTGCG
TCAATCTCACGCCCTTGTATCGAACGAAGTGTTGTGTCTCGCGCTAGTGT
CGACCTCGTTGTTTTTGCTGCACTTGCGAGGGCAGGCCCCCGGCAAAGTT
TTGATGACCGCTCCTGCCGGAGTTCACATGCGAAGAGCATTGCATGCTCG
AGTCCTCTTGCGTGGCACACCTTTGCGTTGGAATAGTGTCGCCTGCGTGT
TTCGTGGGTGTACTTGAAGTTCTTAAGTATCGCTCGGAATACGTGCCCTA
TTATCATGATGATAACTCCCTCCATTCGAATTGATTATCGTAATCGACCT
GGTCAGGCGCTGGAGATCAAGGGTTCAGAGCCGGACGTGAAAATGCCCGA
GGTTTCGGGCGACATCTCACCTTCGGCGAGTGGCGACGTTTCGAAGCCTT
CGGTGAGCCCGGGGAAGTCTTGCTTGACAATCTCGCGACGACGGAAAATA
CTTTTCATAGGTGTATTGTACTGTATCGTACTACATTTTTTTTTACGTTG
TCATTTGACGTTTCGATCCTGTCCTCGTCACGCCAGGATTTTTTTTTTTA
CAGTAGCGGCCGTATTGCGAGCTACATGTGAAAACGTATACTGTGTCGAC
GGCGCTCAGCGAGGTGCTTACCTGAAGACTGTGCAGGCGATCAGTGCCGG
GCTAACGTGGGATACGTCAGCAGCAATACGCGATGTGTTGGAGAGTTGCA
AGGTCTCCTCGCTTCCTTTAGAATTAGTCTAATAAATAACAGAGCTGTTA
ATGAATGAACGCGTATGACGTGGGCAGAGATAACCTTGAGTAATAATGAA
GAACCGTTTTGCTGTTGTGCCGCGGTTTGCAGGCACCCGTCGGGTCCGTG
GCGGTGCCCGAGAGAAATGTAGACATCCCTTCCGTGAAGACTGGCATGTA
CCCACCTTCGGTCAAAGGTGCGTGTTTTTTTTTTTATGATGATTGACATG
TCCGACTTGCTACCGCTGGGCGAGCCAACCCAACCGTTCTCTGGTTCACT
GGAGAGCCGAGGATCGGGTCAAGAAGAGCAGAGCCCATTAAAAGTTGAAC
CGCGGTGCTCGGGTTAGTCCAGTGCCGTGAGTAGTCGATGGTCGTTGTTT
GTTATGTACAGTTTCGTTGGCATACTGGGTTTGACCCTCAGCCGTGCTCG
TCCTCCTGTGCGGTGTCTTTTGATTGGTCAGCAGGACACGCCCCGGTGGG
CGGTGTGTCGGTTACCGCGTCGAACGTGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig749:309221..311801+

>mRNA_F-serratus_M_contig749.18737.1 ID=mRNA_F-serratus_M_contig749.18737.1|Name=mRNA_F-serratus_M_contig749.18737.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig749:309221..311801+ (Fucus serratus male)
ATGTCGGCACCAGAAGAGATCATATCGGGGTCGGAAGCGGAAGCCACTGG
TTCAGAGGTTGAGGGAATAAAAGCGGAGAACCTCGATGCGTCATCGGTGG
AGGAGAAGAAGCTAAGGAAGCGTCTTTTAAGAATGTTCCGATTGGGCAAG
GAAAAACAGGAGATGTCGGCACCAGAAGAGATCATATCGGGGTCGGAAGC
GGAAGCCACTGGTTCAGAGGTTGAGGGAATAAAAGCGGAGAACCTCGATG
CGTCATCGGTGGAGGAGAAGAAGCTAAGGAAGCGTCTTTTAAGAATGTTC
CGATTGGGCAAGGAAAAACAGGAGGCGCTGGAGATCAAGGGTTCAGAGCC
GGACGTGAAAATGCCCGAGGTTTCGGGCGACATCTCACCTTCGGCGAGTG
GCGACGTTTCGAAGCCTTCGGCGCTGGAGATCAAGGGTTCAGAGCCGGAC
GTGAAAATGCCCGAGGTTTCGGGCGACATCTCACCTTCGGCGAGTGGCGA
CGTTTCGAAGCCTTCGGCACCCGTCGGGTCCGTGGCGGTGCCCGAGAGAA
ATGTAGACATCCCTTCCGTGAAGACTGGCATGTACCCACCTTCGGTCAAA
GGCACCCGTCGGGTCCGTGGCGGTGCCCGAGAGAAATGTAGACATCCCTT
CCGTGAAGACTGGCATGTACCCACCTTCGGTCAAAGGACACGCCCCGGTG
GGCGGTGTGTCGGTTACCGCGTCGAACGTGAGGGACACGCCCCGGTGGGC
GGTGTGTCGGTTACCGCGTCGAACGTGAGG
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