mRNA_F-serratus_M_contig749.18736.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig749.18736.1
Unique NamemRNA_F-serratus_M_contig749.18736.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig749.18736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig749contigF-serratus_M_contig749:308511..309535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size389
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig749.18736.1prot_F-serratus_M_contig749.18736.1Fucus serratus malepolypeptideF-serratus_M_contig749 308808..309482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932254.4227517-UTR-F-serratus_M_contig749:308510..3085581622932254.4227517-UTR-F-serratus_M_contig749:308510..308558Fucus serratus maleUTRF-serratus_M_contig749 308511..308558 +
1690964220.1521692-UTR-F-serratus_M_contig749:308510..3085581690964220.1521692-UTR-F-serratus_M_contig749:308510..308558Fucus serratus maleUTRF-serratus_M_contig749 308511..308558 +
1622932254.4368777-UTR-F-serratus_M_contig749:308777..3088071622932254.4368777-UTR-F-serratus_M_contig749:308777..308807Fucus serratus maleUTRF-serratus_M_contig749 308778..308807 +
1690964220.1609406-UTR-F-serratus_M_contig749:308777..3088071690964220.1609406-UTR-F-serratus_M_contig749:308777..308807Fucus serratus maleUTRF-serratus_M_contig749 308778..308807 +
1622932254.490325-UTR-F-serratus_M_contig749:309482..3095351622932254.490325-UTR-F-serratus_M_contig749:309482..309535Fucus serratus maleUTRF-serratus_M_contig749 309483..309535 +
1690964220.1975996-UTR-F-serratus_M_contig749:309482..3095351690964220.1975996-UTR-F-serratus_M_contig749:309482..309535Fucus serratus maleUTRF-serratus_M_contig749 309483..309535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932254.4499195-CDS-F-serratus_M_contig749:308807..3090441622932254.4499195-CDS-F-serratus_M_contig749:308807..309044Fucus serratus maleCDSF-serratus_M_contig749 308808..309044 +
1690964220.1761298-CDS-F-serratus_M_contig749:308807..3090441690964220.1761298-CDS-F-serratus_M_contig749:308807..309044Fucus serratus maleCDSF-serratus_M_contig749 308808..309044 +
1622932254.4722786-CDS-F-serratus_M_contig749:309461..3094821622932254.4722786-CDS-F-serratus_M_contig749:309461..309482Fucus serratus maleCDSF-serratus_M_contig749 309462..309482 +
1690964220.1845388-CDS-F-serratus_M_contig749:309461..3094821690964220.1845388-CDS-F-serratus_M_contig749:309461..309482Fucus serratus maleCDSF-serratus_M_contig749 309462..309482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig749.18736.1

>prot_F-serratus_M_contig749.18736.1 ID=prot_F-serratus_M_contig749.18736.1|Name=mRNA_F-serratus_M_contig749.18736.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MQSVDVTSSGDKVDVSTPDINVGVSASSVDVGSLKDPEIPSVSGPSSDVP
SVGGEVDASIPDVKIVVSAPSADVTYGDDGRRLHP*
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mRNA from alignment at F-serratus_M_contig749:308511..309535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig749.18736.1 ID=mRNA_F-serratus_M_contig749.18736.1|Name=mRNA_F-serratus_M_contig749.18736.1|organism=Fucus serratus male|type=mRNA|length=1025bp|location=Sequence derived from alignment at F-serratus_M_contig749:308511..309535+ (Fucus serratus male)
GTGGACGTCTCCACCCCTGATGTGAAGGTTGGCGTGTCGGCACCGTCTGT
GGACGTGGCGAGTCTGAAGGACCCCGAGATGCCGTTGGTGGACTTACCGT
CTGTGGGCGACAAGGTGGATTCCACCCCTGATATAAAGGTTGCAGTGTCA
GCACCGTCTGTGGACACGGAGAGTCTGAAGGAACCCAAGATGCCGTCGGT
GAGTGATCCGTCAGTGAACGCCCCGTTTGTTAGCGGCGATGTGGATGTCT
CCACCCTTGATGCGAAGGTTGACGTGGGGAGTCTGAAGGACCCCGAGATG
CAGTCGGTGGACGTCACGTCTTCTGGTGACAAGGTGGACGTCTCCACCCC
TGATATAAATGTTGGCGTGTCGGCATCGTCTGTGGACGTGGGAAGTTTGA
AGGACCCCGAGATACCATCGGTGAGCGGTCCGTCGTCGGACGTACCGTCT
GTCGGCGGCGAAGTGGACGCCTCCATCCCTGATGTGAAGATTGTTGTGTC
GGCACCATCGGCGGACGTAACGTATGGCGACGACGCTGATGTGAACGTTG
TCGGTCGGAACCACCGGTGGACGTACCGTCTGTCGAGACGCCTCCACCCC
TGATGTGAACGTTGTCGTGTCGGAACCACCGGTGGACGTACCGTCTGTCG
ACGGCAAGGTAGACGCCTCCACCCCTGATGTGAACGTTGTCGTGTCGGAA
CCACCCGTACCGTCTGTCGACGGCAAGGTAGACGCCTCCACCCCTGATGT
GAACGTTGTCGTGTCGGAACCACCGGTGGACGTACCGTCTGTCGACGGCA
AGGTAGACGCCTCCACCCCTGATGTGAACGTTGTCGTGTCGGAACCACCG
GTGGACGTACCGTCTGTCGACGGCAAGGTAGACGCCTCCACCCCTGATGT
GAACGTTGTCGTGTCGGAACCACCGGTGGACGTACCGTCTGTCGACGGCA
GGGTAGACGCCTCCACCCCTGATGTGAACGTTGTCGTGTCGGAACCACCG
GTGGACGTACCGTCTGTCGACGGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig749:308511..309535+

>mRNA_F-serratus_M_contig749.18736.1 ID=mRNA_F-serratus_M_contig749.18736.1|Name=mRNA_F-serratus_M_contig749.18736.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig749:308511..309535+ (Fucus serratus male)
ATGCAGTCGGTGGACGTCACGTCTTCTGGTGACAAGGTGGACGTCTCCAC
CCCTGATATAAATGTTGGCGTGTCGGCATCGTCTGTGGACGTGGGAAGTT
TGAAGGACCCCGAGATACCATCGGTGAGCGGTCCGTCGTCGGACGTACCG
TCTGTCGGCGGCGAAGTGGACGCCTCCATCCCTGATGTGAAGATTGTTGT
GTCGGCACCATCGGCGGACGTAACGTATGGCGACGACATGCAGTCGGTGG
ACGTCACGTCTTCTGGTGACAAGGTGGACGTCTCCACCCCTGATATAAAT
GTTGGCGTGTCGGCATCGTCTGTGGACGTGGGAAGTTTGAAGGACCCCGA
GATACCATCGGTGAGCGGTCCGTCGTCGGACGTACCGTCTGTCGGCGGCG
AAGTGGACGCCTCCATCCCTGATGTGAAGATTGTTGTGTCGGCACCATCG
GCGGACGTAACGTATGGCGACGACGGTAGACGCCTCCACCCCTGAGGTAG
ACGCCTCCACCCCTGA
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