mRNA_F-serratus_M_contig1009.187.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1009.187.1
Unique NamemRNA_F-serratus_M_contig1009.187.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A6H5K661_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K661_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.420e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  433 STIGACIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDL 588
            ST G+CIVCF DY+ G+ +C+L CGH YHA CIDEW D      CPLCK D+
Sbjct:  254 STRGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 305
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: D8LSX3_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX3_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.790e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  433 STIGACIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDL 588
            ST G+CIVCF DY+ G+ +C+L CGH YHA CIDEW D      CPLCK D+
Sbjct:  247 STGGSCIVCFGDYTYGEELCRLRCGHLYHAKCIDEWLDGENHGWCPLCKTDI 298
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A7R9YY65_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YY65_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 3.630e-9
Identity = 28/49 (57.14%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  448 CIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDLWE 594
            C VC  D+S GD +  LPCGH +HA CID W DR     CPLC+R LWE
Sbjct:  175 CTVCLIDFSLGDMLRTLPCGHEFHAECIDSWMDRN--LTCPLCRRTLWE 221
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A1X2GNB5_9FUNG (RING-type domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GNB5_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 3.130e-8
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:  445 ACIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRD 585
            AC++C DD+++GD V +LPCGH YH  CID W      S CPLCK D
Sbjct:  168 ACVICLDDFTQGDTVRKLPCGHEYHCECIDPWLTIKSAS-CPLCKHD 213
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A8H7VB49_9FUNG (RING-type domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VB49_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 1.010e-7
Identity = 30/72 (41.67%), Postives = 40/72 (55.56%), Query Frame = 1 
Query:  445 ACIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDLWEELLGASAITTGVAEGPVAENVG 660
            +C++C D++S GD V +LPCGH YH  CID W      S CPLCK D     L    IT+ +   P +  +G
Sbjct:  410 SCVICLDEFSSGDTVRKLPCGHEYHCECIDPWLTIKSAS-CPLCKHDC---SLDVPKITSDIEMQPDSREIG 477
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: V4MRY3_EUTSA (RING-type domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4MRY3_EUTSA)

HSP 1 Score: 65.1 bits (157), Expect = 1.180e-7
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  445 ACIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRD 585
            +C +C +DYS GD++  LPCGH YHA C+D W   + ++ CP+CKRD
Sbjct:  230 SCAICLEDYSVGDKLRVLPCGHKYHAACVDSWLT-SWRTFCPVCKRD 275
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A1J4KXD8_9EUKA (RING-type domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KXD8_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-7
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  448 CIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDLWEE 597
            C +C+++  RG++VC+LPC H +H VC+ EWF R  +S CP+C+  L E+
Sbjct:  183 CSICYEELKRGEKVCELPCKHIFHDVCVREWFQR--ESNCPMCRLVLGEK 230
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: U6M9P5_EIMMA (Zinc finger (C3HC4 RING finger) protein, putative n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6M9P5_EIMMA)

HSP 1 Score: 65.5 bits (158), Expect = 1.710e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  448 CIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDLWEEL 600
            C +CFD+Y+ GD   +LPC H++H  CIDEW  R+  S CP+CK DL  EL
Sbjct: 1001 CSICFDEYNHGDEQRRLPCTHSFHKDCIDEWLKRS--SFCPICKYDLNREL 1049
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A0L0FCC5_9EUKA (RING-type domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCC5_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.840e-7
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:  448 CIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDL 588
            C +C +D+  G+++ +LPC HTYH  CIDEW  R G   CP+CK  L
Sbjct:   77 CCICLEDFKAGEKMKRLPCLHTYHDHCIDEWLSRRGT--CPVCKHAL 121
[Close]
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Match: A0A7S0PI42_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PI42_MICPS)

HSP 1 Score: 62.0 bits (149), Expect = 2.040e-7
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  448 CIVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDL 588
            C VC +DY+ G+ +  LPC H+YHA C+D WF+R+ +  CP+CK D+
Sbjct:  151 CAVCLEDYAEGESLRHLPCLHSYHAGCVDRWFERSVE--CPVCKCDV 195
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1009.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K661_9PHAE1.420e-1259.62RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LSX3_ECTSI1.790e-1259.62RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7R9YY65_9CHLO3.630e-957.14Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A1X2GNB5_9FUNG3.130e-855.32RING-type domain-containing protein n=1 Tax=Hessel... [more]
A0A8H7VB49_9FUNG1.010e-741.67RING-type domain-containing protein n=1 Tax=Mucor ... [more]
V4MRY3_EUTSA1.180e-751.06RING-type domain-containing protein n=2 Tax=Eutrem... [more]
A0A1J4KXD8_9EUKA1.250e-746.00RING-type domain-containing protein n=1 Tax=Tritri... [more]
U6M9P5_EIMMA1.710e-752.94Zinc finger (C3HC4 RING finger) protein, putative ... [more]
A0A0L0FCC5_9EUKA1.840e-748.94RING-type domain-containing protein (Fragment) n=1... [more]
A0A7S0PI42_MICPS2.040e-748.94Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1009contigF-serratus_M_contig1009:229857..231869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue8.2e-16
Seed eggNOG ortholog2880.D7FRQ0
KEGG koko:K15692,ko:K19045
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size1492
Cds size675
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1009.187.1prot_F-serratus_M_contig1009.187.1Fucus serratus malepolypeptideF-serratus_M_contig1009 229857..231054 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.137312-CDS-F-serratus_M_contig1009:229856..2302741622928804.137312-CDS-F-serratus_M_contig1009:229856..230274Fucus serratus maleCDSF-serratus_M_contig1009 229857..230274 +
1690962579.76813-CDS-F-serratus_M_contig1009:229856..2302741690962579.76813-CDS-F-serratus_M_contig1009:229856..230274Fucus serratus maleCDSF-serratus_M_contig1009 229857..230274 +
1622928804.150005-CDS-F-serratus_M_contig1009:230797..2310541622928804.150005-CDS-F-serratus_M_contig1009:230797..231054Fucus serratus maleCDSF-serratus_M_contig1009 230798..231054 +
1690962579.7809832-CDS-F-serratus_M_contig1009:230797..2310541690962579.7809832-CDS-F-serratus_M_contig1009:230797..231054Fucus serratus maleCDSF-serratus_M_contig1009 230798..231054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.1594722-UTR-F-serratus_M_contig1009:231054..2318691622928804.1594722-UTR-F-serratus_M_contig1009:231054..231869Fucus serratus maleUTRF-serratus_M_contig1009 231055..231869 +
1690962579.792096-UTR-F-serratus_M_contig1009:231054..2318691690962579.792096-UTR-F-serratus_M_contig1009:231054..231869Fucus serratus maleUTRF-serratus_M_contig1009 231055..231869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1009.187.1

>prot_F-serratus_M_contig1009.187.1 ID=prot_F-serratus_M_contig1009.187.1|Name=mRNA_F-serratus_M_contig1009.187.1|organism=Fucus serratus male|type=polypeptide|length=225bp
FVFDPSKDHKGHSGEYDRNTTEKYGERGNCGGEAERVGNVVGKHGTAPLS
PTPTVSLDAATPVAPVGAPTTAGLWHEVEDDRERGLASAAAETCAVSAGT
DAHETSSSSDELQSTESSAPHNVEGVPADHKRSRGSTCPDSSQWSTIGAC
IVCFDDYSRGDRVCQLPCGHTYHAVCIDEWFDRTGQSCCPLCKRDLWEEL
LGASAITTGVAEGPVAENVGMEAV*
back to top

mRNA from alignment at F-serratus_M_contig1009:229857..231869+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1009.187.1 ID=mRNA_F-serratus_M_contig1009.187.1|Name=mRNA_F-serratus_M_contig1009.187.1|organism=Fucus serratus male|type=mRNA|length=2013bp|location=Sequence derived from alignment at F-serratus_M_contig1009:229857..231869+ (Fucus serratus male)
TTCGTTTTCGACCCCTCCAAAGACCATAAAGGGCACAGCGGTGAATACGA
CCGTAACACGACAGAAAAATATGGAGAGCGTGGAAACTGCGGAGGCGAGG
CAGAGCGAGTAGGCAACGTTGTGGGCAAGCATGGTACTGCCCCGTTGTCC
CCGACTCCCACTGTTTCCCTAGATGCAGCTACGCCGGTTGCCCCGGTAGG
CGCTCCGACAACCGCGGGATTGTGGCACGAGGTGGAGGACGACCGCGAGC
GTGGTTTGGCTTCTGCAGCAGCCGAGACTTGTGCGGTCTCAGCAGGCACC
GACGCCCACGAGACGTCCTCATCTTCTGACGAGCTTCAGTCTACAGAATC
TTCGGCACCGCACAACGTAGAGGGGGTGCCCGCTGACCATAAACGATCTC
GAGGGTCAACATGCCCAGGTATCGAGAAAGGCATGTGATGCTACAGTTTA
TGCTTCGCGTTTAACCTCTTCTACGTTAAACAGGTCGTGGTTGAGCGATT
TGTGGATGCATTTTGTCTAATACCATACGTTTTTGCTGAGCCTTCAATTC
ACAAGCGTCAAATGGCCGCAGGTGAAGCGAAAAACAACGTGTTATTCTGC
TTTCGTGCGTGGGTAGTATGATGAATATTTGCCAGAGATCTGGTGCCCTC
CAGCGTTTTTTCGTTGCGCTTGACCTTCTCTTGTTCGTTCGACGAGCGCA
ATAATAAAAACAAATAGTATTATGCTGTTTTCATTTCACACGTCCGTCCA
GAGTCTCTGCCGTTGCCGCACTAGACAACCTCGCTTTTCAAACCACATGC
ACTCTAGATGATGTAGGTACGACGTACATAGGCACCCTGCCGGAGTGATT
ATTTGTTCCGGCTGCTGCCGGCGTTCGGCTGATCAATGCCTACCGGAAAG
AAATGCTCAAAACCGATCGTGACGGTTCCACTTGTTTACAGACTCGAGCC
AGTGGTCCACCATCGGGGCCTGCATCGTGTGCTTCGACGACTACAGTCGC
GGAGATCGGGTGTGCCAATTGCCGTGTGGCCACACCTATCATGCCGTGTG
CATCGACGAGTGGTTCGACAGAACCGGGCAATCGTGCTGCCCGCTGTGCA
AAAGGGATCTCTGGGAGGAGTTACTCGGTGCCAGCGCTATTACAACGGGG
GTGGCGGAAGGCCCGGTGGCGGAGAACGTAGGCATGGAGGCTGTGTGAGA
CACGGCAGCGTGATCAAAAGGCAAGGTGTATGATACTCCCGCTGGGGGGA
AAGTAGATTCCTCGAATACTTCAGAAAATGATTTGTAGGCTGTATGTTTA
CATAATATTTACAAATAAAACATTAGCTTTCTAGGGAGATGGGTGGAATG
TTGGGAGGCAAGCTGTCTAGGACAGGGAGGAAGCCTTGGGAAGCTTCTGT
ATCTCTGTACTGCCGGATGTTGTACTTTTTCCGAAGCGCTTTATATTAGA
GATGGCTGGAGAGCTCTCGTTCTTCTTCAACGCAATGAGTTGCTGCCGAC
GATCGCGCCAGTTTTTCCATGATACGTTGTTCGGCGGATGAAACTGCAAG
GTGGATGCGTTTGAATTGTTAACACTCGGCGCCCTCTCGGCGTCGCCACT
GGGTGCTATTAATTCGTATCAACACATTGTCGGGAAAGAAACGATACTTT
GCGGTTTCGTAAATAGTGGAAGGTTTTGTTAAGCGAGGGAAAAGGGATCG
TTCCTAGTTGTTGGAAGGCTTAGAAAATATTGGCATCTTCAACGGGGCGT
CCAACGAATCTAGTAACGCACGCTGTGCGCAACAGTGGGAGAGCAAGGTC
GGGCAGAGAACAACATGTTAGTAAGCTTGTGAATGAGGGGCTGGGCGGCC
AGAATGCTCCAAGACGTGTTTGCTTTTGGTCGCTCGAAATATATTCTAGA
AGAGTTCGATGCCATCGTTTATTTGACACTTGCGGCAAATGGAGTGGGCG
GACGGGGCAGCACGCAGCTCGAGATTCAGCGCACCAAGAACTTGGCTTTC
GTGTGTCCTCGCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1009:229857..231869+

>mRNA_F-serratus_M_contig1009.187.1 ID=mRNA_F-serratus_M_contig1009.187.1|Name=mRNA_F-serratus_M_contig1009.187.1|organism=Fucus serratus male|type=CDS|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig1009:229857..231869+ (Fucus serratus male)
TTCGTTTTCGACCCCTCCAAAGACCATAAAGGGCACAGCGGTGAATACGA
CCGTAACACGACAGAAAAATATGGAGAGCGTGGAAACTGCGGAGGCGAGG
CAGAGCGAGTAGGCAACGTTGTGGGCAAGCATGGTACTGCCCCGTTGTCC
CCGACTCCCACTGTTTCCCTAGATGCAGCTACGCCGGTTGCCCCGGTAGG
CGCTCCGACAACCGCGGGATTGTGGCACGAGGTGGAGGACGACCGCGAGC
GTGGTTTGGCTTCTGCAGCAGCCGAGACTTGTGCGGTCTCAGCAGGCACC
GACGCCCACGAGACGTCCTCATCTTCTGACGAGCTTCAGTCTACAGAATC
TTCGGCACCGCACAACGTAGAGGGGGTGCCCGCTGACCATAAACGATCTC
GAGGGTCAACATGCCCAGTTCGTTTTCGACCCCTCCAAAGACCATAAAGG
GCACAGCGGTGAATACGACCGTAACACGACAGAAAAATATGGAGAGCGTG
GAAACTGCGGAGGCGAGGCAGAGCGAGTAGGCAACGTTGTGGGCAAGCAT
GGTACTGCCCCGTTGTCCCCGACTCCCACTGTTTCCCTAGATGCAGCTAC
GCCGGTTGCCCCGGTAGGCGCTCCGACAACCGCGGGATTGTGGCACGAGG
TGGAGGACGACCGCGAGCGTGGTTTGGCTTCTGCAGCAGCCGAGACTTGT
GCGGTCTCAGCAGGCACCGACGCCCACGAGACGTCCTCATCTTCTGACGA
GCTTCAGTCTACAGAATCTTCGGCACCGCACAACGTAGAGGGGGTGCCCG
CTGACCATAAACGATCTCGAGGGTCAACATGCCCAGACTCGAGCCAGTGG
TCCACCATCGGGGCCTGCATCGTGTGCTTCGACGACTACAGTCGCGGAGA
TCGGGTGTGCCAATTGCCGTGTGGCCACACCTATCATGCCGTGTGCATCG
ACGAGTGGTTCGACAGAACCGGGCAATCGTGCTGCCCGCTGTGCAAAAGG
GATCTCTGGGAGGAGTTACTCGGTGCCAGCGCTATTACAACGGGGGTGGC
GGAAGGCCCGGTGGCGGAGAACGTAGGCATGGAGGCTGTGTGAACTCGAG
CCAGTGGTCCACCATCGGGGCCTGCATCGTGTGCTTCGACGACTACAGTC
GCGGAGATCGGGTGTGCCAATTGCCGTGTGGCCACACCTATCATGCCGTG
TGCATCGACGAGTGGTTCGACAGAACCGGGCAATCGTGCTGCCCGCTGTG
CAAAAGGGATCTCTGGGAGGAGTTACTCGGTGCCAGCGCTATTACAACGG
GGGTGGCGGAAGGCCCGGTGGCGGAGAACGTAGGCATGGAGGCTGTGTGA
back to top