mRNA_F-serratus_M_contig7411.18680.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7411.18680.1
Unique NamemRNA_F-serratus_M_contig7411.18680.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7411.18680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7411contigF-serratus_M_contig7411:5604..6959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size535
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7411.18680.1prot_F-serratus_M_contig7411.18680.1Fucus serratus malepolypeptideF-serratus_M_contig7411 5604..6959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932247.6695266-CDS-F-serratus_M_contig7411:5603..56801622932247.6695266-CDS-F-serratus_M_contig7411:5603..5680Fucus serratus maleCDSF-serratus_M_contig7411 5604..5680 -
1690964217.054178-CDS-F-serratus_M_contig7411:5603..56801690964217.054178-CDS-F-serratus_M_contig7411:5603..5680Fucus serratus maleCDSF-serratus_M_contig7411 5604..5680 -
1622932247.6883996-CDS-F-serratus_M_contig7411:6350..65311622932247.6883996-CDS-F-serratus_M_contig7411:6350..6531Fucus serratus maleCDSF-serratus_M_contig7411 6351..6531 -
1690964217.0667977-CDS-F-serratus_M_contig7411:6350..65311690964217.0667977-CDS-F-serratus_M_contig7411:6350..6531Fucus serratus maleCDSF-serratus_M_contig7411 6351..6531 -
1622932247.7130852-CDS-F-serratus_M_contig7411:6683..69591622932247.7130852-CDS-F-serratus_M_contig7411:6683..6959Fucus serratus maleCDSF-serratus_M_contig7411 6684..6959 -
1690964217.0786977-CDS-F-serratus_M_contig7411:6683..69591690964217.0786977-CDS-F-serratus_M_contig7411:6683..6959Fucus serratus maleCDSF-serratus_M_contig7411 6684..6959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7411.18680.1

>prot_F-serratus_M_contig7411.18680.1 ID=prot_F-serratus_M_contig7411.18680.1|Name=mRNA_F-serratus_M_contig7411.18680.1|organism=Fucus serratus male|type=polypeptide|length=178bp
MHGTEEEWRKKIAAGGRERDDALSLNCFSSSAISFPFAAQLAEGIGAKII
CLRTLLEGFMVTRVSHDQDARIGNIYRTFFNANECYDRAHIQKNLMKNVG
KCAKGNGDRVNRNFNNAICRAKKEWQKEGDKSPWVWPESFIEFIVHLPLH
LQGAEKHIIVEEDCEGGILPSANAAGRV
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mRNA from alignment at F-serratus_M_contig7411:5604..6959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7411.18680.1 ID=mRNA_F-serratus_M_contig7411.18680.1|Name=mRNA_F-serratus_M_contig7411.18680.1|organism=Fucus serratus male|type=mRNA|length=1356bp|location=Sequence derived from alignment at F-serratus_M_contig7411:5604..6959- (Fucus serratus male)
ATGCACGGGACTGAAGAAGAGTGGCGAAAGAAGATTGCAGCGGGAGGTCG
CGAGCGGGACGACGCTTTGTCACTAAACTGCTTCTCCAGCTCTGCTATTT
CGTTCCCTTTCGCGGCACAGCTGGCAGAGGGCATTGGAGCGAAGATCATC
TGCTTACGAACACTGCTCGAGGGGTTCATGGTAACAAGGGTCTCTCATGA
TCAAGATGCTCGTATCGGCAATATCTACAGAACCTTCTTCAACGCGAACG
AGTGCTATGATCGTGCGCATATTCAGGTCGGTGGTGGACTTATGTATACC
GTAAACGCGCTTGTTCAATGTTATTAGAACCTCTTTTTTTTGTTTTGTAA
TCTAATTGTACGCTCACACGCCTCCCTCGTGGCGTGTCCTTCGATTTACA
CGCTTCCCTTTTGTCCTCTTCACGGCAGAAAAATCTGATGAAGAACGTCG
GGAAATGCGCGAAAGGGAACGGTGATCGAGTCAACCGCAACTTCAACAAT
GCCATCTGCCGTGCGAAAAAGGAGTGGCAGAAGGAGGGAGATAAATCGCC
ATGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATTGC
ATCTACAAGGTAAAAACGATACTTTTTCATTATGCGTTTCGCTTTTTTCC
TTGTCGCGTGCAAAAGTAGCCAAGCGCACAAAAACAAATAGCTCACAAAT
GGATGAATGGTGTGGTTGCCTCCCTGTGCACACGTTATCACCACGGTTCC
TGGTCGTTGGGTGTTACTATAGTCAGACTTGTTTGGAACCGTGAGCGTTC
TATAGTTGTGTGCGTGCACACGTACGCCTACACTATATGAGTGGTTCATC
CAATGGGGGGGACGGGGATGTCGAAAATGTTTACTCGTTTTGGTAGGGAA
CGGCGCGATAAATAGACCCGGCTACATATATGCCCAACTCCTTGCGGAAA
TGAATTGTATTCGGGGCAAGCTTGCCGACCATGAATACCTGGAAGGTGGG
ACGTCTTGGTGACCACCCCGGGGACGGAATCGACGTACCCCCGCCCCCTC
AATCGTTGAACGAATCATATACAGTACTCTGGGGGCCGGGCGCATGGGAA
CTGAGTTTTTTGGGTCGACGATTTCAGGCCGTCAAAATGCCCCATATCAC
GTGCTCCGTATCATTGGGCAACTGTAAAGTGAGAGTCTGTAATACCTTGC
AAAACGTACACCGCCTGCCCCTTTTCTTGCGCGATCTCCCTGACAGGAGA
CCACACGTTCTACTCTTCCGATTGTGCAGGTGCTGAAAAGCATATCATCG
TTGAAGAAGATTGCGAGGGCGGGATTCTGCCGTCCGCCAACGCTGCCGGA
AGGGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7411:5604..6959-

>mRNA_F-serratus_M_contig7411.18680.1 ID=mRNA_F-serratus_M_contig7411.18680.1|Name=mRNA_F-serratus_M_contig7411.18680.1|organism=Fucus serratus male|type=CDS|length=1068bp|location=Sequence derived from alignment at F-serratus_M_contig7411:5604..6959- (Fucus serratus male)
ATGCACGGGACTGAAGAAGAGTGGCGAAAGAAGATTGCAGCGGGAGGTCG
CGAGCGGGACGACGCTTTGTCACTAAACTGCTTCTCCAGCTCTGCTATTT
CGTTCCCTTTCGCGGCACAGCTGGCAGAGGGCATTGGAGCGAAGATCATC
TGCTTACGAACACTGCTCGAGGGGTTCATGGTAACAAGGGTCTCTCATGA
TCAAGATGCTCGTATCGGCAATATCTACAGAACCTTCTTCAACGCGAACG
AGTGCTATGATCGTGCGCATATTCAGATGCACGGGACTGAAGAAGAGTGG
CGAAAGAAGATTGCAGCGGGAGGTCGCGAGCGGGACGACGCTTTGTCACT
AAACTGCTTCTCCAGCTCTGCTATTTCGTTCCCTTTCGCGGCACAGCTGG
CAGAGGGCATTGGAGCGAAGATCATCTGCTTACGAACACTGCTCGAGGGG
TTCATGGTAACAAGGGTCTCTCATGATCAAGATGCTCGTATCGGCAATAT
CTACAGAACCTTCTTCAACGCGAACGAGTGCTATGATCGTGCGCATATTC
AGAAAAATCTGATGAAGAACGTCGGGAAATGCGCGAAAGGGAACGGTGAT
CGAGTCAACCGCAACTTCAACAATGCCATCTGCCGTGCGAAAAAGGAGTG
GCAGAAGGAGGGAGATAAATCGCCATGGGTTTGGCCCGAGTCTTTCATCG
AATTTATCGTTCACCTCCCATTGCATCTACAAGAAAAATCTGATGAAGAA
CGTCGGGAAATGCGCGAAAGGGAACGGTGATCGAGTCAACCGCAACTTCA
ACAATGCCATCTGCCGTGCGAAAAAGGAGTGGCAGAAGGAGGGAGATAAA
TCGCCATGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCC
ATTGCATCTACAAGGTGCTGAAAAGCATATCATCGTTGAAGAAGATTGCG
AGGGCGGGATTCTGCCGTCCGCCAACGCTGCCGGAAGGGTCGTGCTGAAA
AGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGCCGTCCGCC
AACGCTGCCGGAAGGGTC
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