mRNA_F-serratus_M_contig741.18670.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A4D6NXF4_UNDPI (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A4D6NXF4_UNDPI) HSP 1 Score: 443 bits (1140), Expect = 5.870e-151 Identity = 219/255 (85.88%), Postives = 232/255 (90.98%), Query Frame = 1
Query: 1 MSTLAGEVGGVGIERIKGTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
++ +AG VGG GIERIKGTDKEGLLDV R+DRARKGPEIK+PQDQK+K+GIIGGGLAGMITAMDLSEAGH VEIFEARPFMGGKVGSW+DKDGNHIEMGLHVFFGCYYNFFGIFRRLGIF+SALRLK HTHQFVNK GG LG F GGIGAPFNGLKAFATT QLGIYDK+ANALALGTSPIVKAL NFDAAMEDVRALD +TFSEWFEGKGGSRGSI R+WDP+AYALGFIDCDHISARCMLTIFQ
Sbjct: 55 VAGVAGTVGGSGIERIKGTDKEGLLDVNRIDRARKGPEIKLPQDQKMKIGIIGGGLAGMITAMDLSEAGHQVEIFEARPFMGGKVGSWKDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFDSALRLKVHTHQFVNK----GGELGA---LDFRMGGIGAPFNGLKAFATTDQLGIYDKLANALALGTSPIVKALFNFDAAMEDVRALDKMTFSEWFEGKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQ 302
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: D8LJ40_ECTSI (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ40_ECTSI) HSP 1 Score: 431 bits (1108), Expect = 3.370e-146 Identity = 213/255 (83.53%), Postives = 232/255 (90.98%), Query Frame = 1
Query: 1 MSTLAGEVGGVGIERIKGTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
++ +AG VG GIERIKGTDKEGLLDV R+DRARKGPEIK+P+DQKLKVG+IGGGLAGMIT+MDL+EAGH+VEIFEARPFMGGKVGSW+DKDGNHIEMGLHVFFGCYYNFFGIFRRLGIF+SALRLK H HQF+ + GG LG G F GGIGAP NGLKAFATTGQLGI+DK+ANALALGTSPIVKAL NFD AMEDVRALDS+TFSEWFEGKGGSRGSI+RLWDPIAYALGFIDCD+ISARCMLTIFQ
Sbjct: 49 VAGVAGTVGATGIERIKGTDKEGLLDVNRIDRARKGPEIKLPEDQKLKVGVIGGGLAGMITSMDLAEAGHEVEIFEARPFMGGKVGSWKDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFDSALRLKDHNHQFLKQ----GGELG---GLDFRMGGIGAPINGLKAFATTGQLGIFDKLANALALGTSPIVKALFNFDWAMEDVRALDSMTFSEWFEGKGGSRGSIERLWDPIAYALGFIDCDNISARCMLTIFQ 296
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A6H5JB95_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB95_9PHAE) HSP 1 Score: 416 bits (1070), Expect = 3.220e-140 Identity = 215/268 (80.22%), Postives = 230/268 (85.82%), Query Frame = 1
Query: 16 GEVGGVGIERIKGTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNK---------ACMN--------GGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQA 768
G VGG+GIERIKGTDKEGLLDV R+DRARKGPEIK+P+DQKLKVG+IGGGLAGMIT+MDL+EAGH+VEIFEARPFMGGK DKDGNHIEMGLHVFFGCYYNFFGIFRRLGIF+SALRLK H HQFVNK A +N GG LG G F GGIGAP NGLKAFATTGQLGI+DK+ANALALGTSPIVKAL NFD AMEDVRALDS+TFSEWFEGKGGSRGSI+RLWDPIAYALGFIDCD+ISARCMLTIFQA
Sbjct: 51 GTVGGMGIERIKGTDKEGLLDVNRIDRARKGPEIKLPEDQKLKVGVIGGGLAGMITSMDLAEAGHEVEIFEARPFMGGK-----DKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFDSALRLKDHNHQFVNKGTRATLLPCAVLNEIFLKKFKGGELG---GLDFRMGGIGAPINGLKAFATTGQLGIFDKLANALALGTSPIVKALFNFDWAMEDVRALDSMTFSEWFEGKGGSRGSIERLWDPIAYALGFIDCDNISARCMLTIFQA 310
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A836CNI7_9STRA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI7_9STRA) HSP 1 Score: 380 bits (975), Expect = 4.300e-126 Identity = 189/252 (75.00%), Postives = 210/252 (83.33%), Query Frame = 1
Query: 10 LAGEVGGVGIERIKGTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
+AG+VG G+E++ G+D EGLLD R+ RA GP +KVP QKLK+ I+G GL GMITAMDLSEAGHDVEIFEAR F+GGKVGSW DKDGNHIEMGLHVFFGCYYN FGIFRRLGIF+SALRLK H H FVN GG LG G F GGIGAPFNG+KAF T+ QL + DK+ANALAL TSP+VKAL NFDAAM DVRALD+++FSEWFEG+GGSRGSI RLWDPIAYALGFIDCDHISARCMLTIFQ
Sbjct: 52 VAGQVG-AGVEQVAGSDSEGLLDTSRMQRASNGPGVKVPPSQKLKIAIVGAGLGGMITAMDLSEAGHDVEIFEARRFVGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIFRRLGIFDSALRLKEHEHMFVN----TGGVLG---GLDFRMGGIGAPFNGVKAFLTSTQLSVGDKLANALALATSPVVKALFNFDAAMVDVRALDAVSFSEWFEGQGGSRGSITRLWDPIAYALGFIDCDHISARCMLTIFQ 295
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A0G4FAC3_VITBC (Zeta-carotene desaturase, chloroplastic/chromoplastic n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FAC3_VITBC) HSP 1 Score: 367 bits (942), Expect = 1.080e-121 Identity = 176/236 (74.58%), Postives = 201/236 (85.17%), Query Frame = 1
Query: 58 DKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
D EGLLDV RL+RA GP+I +P DQ+LK+G++G GLAG++TAMDL++AGH VEI+E RPF+GGKVGSW DKDGNHIEMGLHVFFGCYYN FGIF+RLGIFE ALRLKTHTHQFVNK GG +G F GG+GAPFNGLKAFATT QL + DK+ANA+AL TSP+V+ L++FD AMEDVR LD I+FSEWF KGGSRGSIDR+WDPIAYALGFIDCDHISARCMLTIFQ
Sbjct: 4 DAEGLLDVKRLERAATGPQIFLPDDQRLKIGVVGAGLAGLVTAMDLADAGHSVEIYETRPFIGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIFKRLGIFEDALRLKTHTHQFVNK----GGDVGA---LDFRMGGVGAPFNGLKAFATTSQLELGDKVANAIALATSPVVRGLVDFDGAMEDVRNLDDISFSEWFLSKGGSRGSIDRMWDPIAYALGFIDCDHISARCMLTIFQ 232
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: W7UB54_9STRA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UB54_9STRA) HSP 1 Score: 355 bits (912), Expect = 2.190e-116 Identity = 178/247 (72.06%), Postives = 203/247 (82.19%), Query Frame = 1
Query: 37 IERIKGTDKEGLLDVGRLDRARKGP----EIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
+E+++G+DKE LLD+ LDRA GP +K ++L+VGIIGGGL G+ITAMDLSEAGH+VEIFEAR F GGKVGSW DKDGNHIEMGLHVFFGCYYN FGI +RLG+FES+LRLK HTH F+NK GG +G F +GGIGAP NGLKAFATT QL I DK+ANA+AL TSP+VKAL +FDAAMEDVRALD I+FSEWF KGGSRGS+ R+WDPIAYALGFIDCDHISARCMLTIFQ
Sbjct: 57 VEQVRGSDKEKLLDLSVLDRAMSGPPANLRVKDTSTERLRVGIIGGGLGGLITAMDLSEAGHEVEIFEARRFAGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGIMKRLGVFESSLRLKDHTHSFINK----GGRVGE---LDFRFGGIGAPVNGLKAFATTSQLEIGDKIANAVALATSPVVKALFDFDAAMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDHISARCMLTIFQ 296
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A7S0VWE6_9CRYP (Zeta-carotene desaturase, chloroplastic/chromoplastic n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VWE6_9CRYP) HSP 1 Score: 336 bits (861), Expect = 8.270e-109 Identity = 170/258 (65.89%), Postives = 195/258 (75.58%), Query Frame = 1
Query: 4 STLAGEVGGVGIERIK----GTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
+T A G VG ++ GTD+ LLD A +GP IKV +KLK+GI+GGGLAGM+TAMDL++AGH EIFE+R F GGK GSW DKDGNHIEMGLHVFFGCYYN FGI R+G F+ ++RLK H H FVNK GG +G F GGIGAPFNGLKAFATT QLG+YDK+ NA+ LGTSPIV+AL++FD ME VR LD ITFSEWF GGSRGSI+R+WDPIAYALGFIDCDHISARCMLTIFQ
Sbjct: 58 ATRAQRAGAVGERKLGDSVIGTDESRLLDDSLRGDALRGPSIKVDPSKKLKIGIVGGGLAGMVTAMDLADAGHSCEIFESRNFAGGKAGSWVDKDGNHIEMGLHVFFGCYYNLFGILERVGTFDESMRLKDHLHTFVNK----GGDIGA---LDFRMGGIGAPFNGLKAFATTEQLGVYDKLMNAVRLGTSPIVRALVDFDGGMEMVRDLDDITFSEWFLRFGGSRGSIERMWDPIAYALGFIDCDHISARCMLTIFQ 308
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A8J5XB03_DIALT (Zeta-carotene desaturase, chloroplastic/chromoplastic n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XB03_DIALT) HSP 1 Score: 333 bits (853), Expect = 6.620e-108 Identity = 168/246 (68.29%), Postives = 193/246 (78.46%), Query Frame = 1
Query: 37 IERIKGTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALG---TSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
+ER + DK+ LLD +RA +GP ++ ++LKVGI+G GL GM+TAMDLSEAG+DVE+FEAR F+GGKV SW DKDGNHIEMGLHVFFGCYYN FGI +R+G FE LRLK H H FVNK GGS+G F GGIGAP NGLKAFAT+ QL I DK+ANALALG + PIV+AL++FD M+ VRALD +TFSEWFEG GGSRGSI RLWDPIAYALGFIDCDHISARCMLTIFQ
Sbjct: 38 LERTQLGDKDRLLDTSLTERALRGPTVRAKDGRRLKVGIVGAGLGGMVTAMDLSEAGYDVEMFEARRFVGGKVSSWLDKDGNHIEMGLHVFFGCYYNLFGIMKRVGAFEPGLRLKDHRHIFVNK----GGSIGE---LDFRMGGIGAPLNGLKAFATSAQLDIGDKIANALALGNPISCPIVQALVDFDGGMDRVRALDDVTFSEWFEGSGGSRGSIKRLWDPIAYALGFIDCDHISARCMLTIFQ 276
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: L1JLR2_GUITC (Zeta-carotene desaturase, chloroplastic/chromoplastic n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JLR2_GUITC) HSP 1 Score: 322 bits (825), Expect = 1.670e-104 Identity = 156/226 (69.03%), Postives = 186/226 (82.30%), Query Frame = 1
Query: 88 LDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
+ +A +GP ++ P+++KLK+GI+G GLAGM+TAMDL +AGH+VEIFEAR F+GGKVGSW DKDGNHIEMGLHVFFGCYYN FGI +R+G F+ +LRLK H H FVN+ GG G F GGIGAPFNGLKAFATT QLG+YDK+ NA+ LGTSPIV+AL++FD M+ VR+LD I+FSEWF GGSRGSI R+WDPIAYALGFIDCD+ISARCMLTIFQ
Sbjct: 1 MQKAFQGPSVRFPEEKKLKIGIVGSGLAGMVTAMDLVDAGHEVEIFEARNFVGGKVGSWVDKDGNHIEMGLHVFFGCYYNLFGILQRVGTFDKSLRLKEHRHIFVNE----GGWTGE---LDFRMGGIGAPFNGLKAFATTEQLGLYDKLMNAVRLGTSPIVRALVDFDGGMDMVRSLDDISFSEWFLRLGGSRGSIKRMWDPIAYALGFIDCDNISARCMLTIFQ 219
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Match: A0A0K6SAL9_9ALVE (Zeta-carotene desaturase, chloroplastic/chromoplastic n=3 Tax=Chromera velia TaxID=505693 RepID=A0A0K6SAL9_9ALVE) HSP 1 Score: 320 bits (819), Expect = 7.550e-103 Identity = 156/236 (66.10%), Postives = 184/236 (77.97%), Query Frame = 1
Query: 58 DKEGLLDVGRLDRARKGPEIKVPQDQKLKVGIIGGGLAGMITAMDLSEAGHDVEIFEARPFMGGKVGSWQDKDGNHIEMGLHVFFGCYYNFFGIFRRLGIFESALRLKTHTHQFVNKACMNGGSLGVSWGAGFSYGGIGAPFNGLKAFATTGQLGIYDKMANALALGTSPIVKALINFDAAMEDVRALDSITFSEWFEGKGGSRGSIDRLWDPIAYALGFIDCDHISARCMLTIFQ 765
D + LLD R RA KGP KV ++KLK+ I+G GLAG+ AMDLSEAGH+V IFEARPF+GGKVGSW+DKDGNH+EMGLHVFFGCYYN FGIF+RLGIF+ ALRLK HTH FVN+ GG L G F G IGAP NGL AF T QL YDK N +AL SP+V+ L++FD AME++R LD I+F++WF +GGSRGSI+RLW+PIAYALGFIDCD++SARCMLTIFQ
Sbjct: 50 DSDKLLDRSRQSRAAKGPNQKVKPEEKLKIAIVGAGLAGLTAAMDLSEAGHEVTIFEARPFIGGKVGSWEDKDGNHVEMGLHVFFGCYYNLFGIFQRLGIFDQALRLKEHTHTFVNE----GGRLA---GLDFRLGNIGAPINGLNAFFQTQQLEPYDKFRNTIALALSPVVRGLVDFDGAMENIRDLDGISFTDWFLSRGGSRGSIERLWNPIAYALGFIDCDNMSARCMLTIFQ 278 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig741.18670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig741.18670.1 >prot_F-serratus_M_contig741.18670.1 ID=prot_F-serratus_M_contig741.18670.1|Name=mRNA_F-serratus_M_contig741.18670.1|organism=Fucus serratus male|type=polypeptide|length=267bp MSTLAGEVGGVGIERIKGTDKEGLLDVGRLDRARKGPEIKVPQDQKLKVGback to top mRNA from alignment at F-serratus_M_contig741:19310..21466+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig741.18670.1 ID=mRNA_F-serratus_M_contig741.18670.1|Name=mRNA_F-serratus_M_contig741.18670.1|organism=Fucus serratus male|type=mRNA|length=2157bp|location=Sequence derived from alignment at F-serratus_M_contig741:19310..21466+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig741:19310..21466+ >mRNA_F-serratus_M_contig741.18670.1 ID=mRNA_F-serratus_M_contig741.18670.1|Name=mRNA_F-serratus_M_contig741.18670.1|organism=Fucus serratus male|type=CDS|length=1602bp|location=Sequence derived from alignment at F-serratus_M_contig741:19310..21466+ (Fucus serratus male)back to top |