mRNA_F-serratus_M_contig740.18662.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig740.18662.1
Unique NamemRNA_F-serratus_M_contig740.18662.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig740.18662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig740contigF-serratus_M_contig740:276365..278823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig740.18662.1prot_F-serratus_M_contig740.18662.1Fucus serratus malepolypeptideF-serratus_M_contig740 276365..278799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932243.6020648-CDS-F-serratus_M_contig740:276364..2764691622932243.6020648-CDS-F-serratus_M_contig740:276364..276469Fucus serratus maleCDSF-serratus_M_contig740 276365..276469 +
1690964215.4533298-CDS-F-serratus_M_contig740:276364..2764691690964215.4533298-CDS-F-serratus_M_contig740:276364..276469Fucus serratus maleCDSF-serratus_M_contig740 276365..276469 +
1622932243.6215017-CDS-F-serratus_M_contig740:278670..2787991622932243.6215017-CDS-F-serratus_M_contig740:278670..278799Fucus serratus maleCDSF-serratus_M_contig740 278671..278799 +
1690964215.4622352-CDS-F-serratus_M_contig740:278670..2787991690964215.4622352-CDS-F-serratus_M_contig740:278670..278799Fucus serratus maleCDSF-serratus_M_contig740 278671..278799 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932243.6375132-UTR-F-serratus_M_contig740:278799..2788231622932243.6375132-UTR-F-serratus_M_contig740:278799..278823Fucus serratus maleUTRF-serratus_M_contig740 278800..278823 +
1690964215.4702115-UTR-F-serratus_M_contig740:278799..2788231690964215.4702115-UTR-F-serratus_M_contig740:278799..278823Fucus serratus maleUTRF-serratus_M_contig740 278800..278823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig740.18662.1

>prot_F-serratus_M_contig740.18662.1 ID=prot_F-serratus_M_contig740.18662.1|Name=mRNA_F-serratus_M_contig740.18662.1|organism=Fucus serratus male|type=polypeptide|length=78bp
GVCVLLKKKIAPILHSTSGPRDRISSHTPQDLLFQVCRLPMILGHSALWM
QISKFKHERKGVLHRLPVYLPSLRRLF*
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mRNA from alignment at F-serratus_M_contig740:276365..278823+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig740.18662.1 ID=mRNA_F-serratus_M_contig740.18662.1|Name=mRNA_F-serratus_M_contig740.18662.1|organism=Fucus serratus male|type=mRNA|length=2459bp|location=Sequence derived from alignment at F-serratus_M_contig740:276365..278823+ (Fucus serratus male)
GGGGTTTGCGTGCTATTGAAGAAGAAGATCGCCCCCATCCTTCATTCCAC
TTCCGGCCCTCGGGATAGAATTTCCAGCCATACGCCACAAGACCTCTTGT
TCCAGGTGAGGACCCATGAGAACTACCAGTACATAGTAGGCCGAGTTACC
ACTGTTGCGAACAACGCATAGGCAGGAACACGCAGTAGCCTAAGAGCAGG
CAGTAGGCTAACGATAAACCCAGTACGCGGTCTGCTCTTGTATCATGTAT
GTATGGTCACACATAAAGCAAGAGTATGGATCAACGAGGTAAGGTTGCTA
ATCCTGCTCGTGATCAGCTGAACAGGGAAAATGAATATTTCCCTGTCCGC
GATCGCTCAAAAGAATTCGGTCTCGTAAGACGGGTTCGGCAGTCCCATCC
CGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTA
CGGGATGCCTCCCGAGTTCCGCGGCGGCGTCCATTCATTCATTTATTCGA
AACCACCATAGGCGATCATGTCGGTCACGTGTTTATTGGGTCACGCAATT
GCGTATCATACCGATGGCGTTCACTGCCGAGAGTCCGCCGGTCCAGGGTC
AGTGAACCTCAAGGTAGATCCGAACGAGTACTGCCTTGGCAGGTCTCCAT
GGACCAATTAATATTAATATGGGCCTCTCTTTCCCACACCCAATATCGGT
ATGAAGTGGGCATGTTGAAAGTACCGGCAGCATGAGATTACGTAACAGAC
AGTACGAGTAAAGCAGATTGCTTCTACGCAACGCTGTATCCGTGCCCAAG
TCTCTTGGTGCGCGGAATGTCTTGTTTGTAATCAGTCACCAAGCATGTAT
GTGTGGTCACACATATAGCAAGAGTATGGATCAACCTGGTAAGGTTGCCA
ATCCTGCTCGTGGTCAGCTGAACAGGGAAAAGAACATCCCCGTCCGCGTT
CGTGCTTGAGAATATGTTGCTCCGATTTTTTCCTGTCCAGCAGACCGCGT
ACTGTACTGGATTGACAACCGCGGATATTACTGGGTATTGTATTGTTGAG
GCCCGATCCGTTAAAAGAACACACACACACACACACACACACACACACGC
ACACACCTAAGTATCATTTATTCCCCTTGGGAGGATCAAAGCGAGTGGCA
TAGAATGAGTATTAATAGGATGACAGGGCTGGATTGCGCGGTCATGTGCA
ATTTAATACCAGGTAAATAAACACACACACGCACACACAGTTTTCGTAAT
AAGTATCATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATG
ACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATAC
ACACACACACACACACACGACACACACACAGTATCAATAGTATTGTTTTG
CAACTACCTGATACGTGGTGTATAATCTAAGGATAAAGGTATACTTGTAG
TTTACATACATAAGGAGAGAGATTTATCCGGGGAGAAATTGCTTGAGTAG
TTGGGATATAGTACTCTGTCAGGTTTAGTAGATTAGGTGCGTTCCCTACC
TACCTGCCCCTTGCCTTACCTTACCCTACATACATTACATTAGTCCTTTT
TGTGGCCCTTCACGGTTGTTTGTGTTTTCTCTATTCTCTATTCTCAAACC
AAAATAAAAAAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTAGTAC
ACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTC
TCGCGATAAAAATTAAGGCACGCGCCACAGAAGGAAGGTGGATGAGAAAT
CCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACAAACT
TGATGTCCAGAATGGATGGGAAGAAAACACACACACACACACACACACAC
AGCCCTTTGTCGCGTCTGATTAGAGGTTTTCGTAATAAGTATCATTGATC
CCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACACG
GCCGGATTGCGTGGTTATGTGCAATTTAATAAATACACACACACACACAC
ACACGAAGAACGGTCTCTTGTACTTTCTGGATCATGTTCAAGAGTTGTGC
AATGGCCCTCTTTGCTCTACTCTACCCTTCCTCAAGATATACCGTACTGT
ACCTCTTACGCTAGAGCTACATATAGACCGAAGGATTGCGTATACATTGC
TCTAGTGAATTTTACTTACAGACGTTCCCACGCTTTCCGTTACGAAAGAA
AGAACACAAATTCTGATTTAAGCTAAGAATTGAACTCACGACCTCCGCAC
TAGCAGGTATGCAGGTTACCTATGATACTAGGCCACTCGGCTCTGTGGAT
GCAAATCTCGAAATTCAAACACGAAAGGAAAGGCGTTTTACACCGGCTCC
CGGTGTACCTGCCAAGTCTCCGACGACTGTTCTAGGCGTGGGGTACCGCG
CGCTGCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig740:276365..278823+

>mRNA_F-serratus_M_contig740.18662.1 ID=mRNA_F-serratus_M_contig740.18662.1|Name=mRNA_F-serratus_M_contig740.18662.1|organism=Fucus serratus male|type=CDS|length=468bp|location=Sequence derived from alignment at F-serratus_M_contig740:276365..278823+ (Fucus serratus male)
GGGGTTTGCGTGCTATTGAAGAAGAAGATCGCCCCCATCCTTCATTCCAC
TTCCGGCCCTCGGGATAGAATTTCCAGCCATACGCCACAAGACCTCTTGT
TCCAGGGGGTTTGCGTGCTATTGAAGAAGAAGATCGCCCCCATCCTTCAT
TCCACTTCCGGCCCTCGGGATAGAATTTCCAGCCATACGCCACAAGACCT
CTTGTTCCAGGTATGCAGGTTACCTATGATACTAGGCCACTCGGCTCTGT
GGATGCAAATCTCGAAATTCAAACACGAAAGGAAAGGCGTTTTACACCGG
CTCCCGGTGTACCTGCCAAGTCTCCGACGACTGTTCTAGGTATGCAGGTT
ACCTATGATACTAGGCCACTCGGCTCTGTGGATGCAAATCTCGAAATTCA
AACACGAAAGGAAAGGCGTTTTACACCGGCTCCCGGTGTACCTGCCAAGT
CTCCGACGACTGTTCTAG
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