mRNA_F-serratus_M_contig74.18648.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig74.18648.1
Unique NamemRNA_F-serratus_M_contig74.18648.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig74.18648.1 vs. uniprot
Match: A0A6H5JJF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF4_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 8.150e-77
Identity = 157/357 (43.98%), Postives = 208/357 (58.26%), Query Frame = 1 
Query:    1 KLPLSVHLKVWSSTFMSYGQSFEESFSWDRRRQEQSIKDKAEKSVEALKEIAKDVREATHNTPEDIXXXXXXXXXXLAEIHENRDGLKSAAQEKLDLIRFSLSEFSTGYREARDQELKRIMAMDKNVLQGFVEERWEEVKRASSILSDALLSDXXXXXXXXXXAA--------------------------------KPSVATATTKAGDVATGAG---GVGDKDKEAVLGTPSSPRDFMSQRARDALDDFLKDPDIEQLLGRVRGFAEGRLVQAEAAARVLKGEDEAGRAQGTRGDRTDAEGAARSGPKISSDTPILSGLASDAREFVEGRVAQARDGVREVAGAIAEVRASHQSA 966
            KLPLSVH ++WSST+  Y  SF ESF+W R+R+E++ K +A + +  L+ + K+ RE THN+PED+          + EIHENRD LKSAAQEKLDLIR SLSEFSTGYREARD+E+KR+MAMDK+++Q F+ ER  EVK A+S+++DA+L                                              +P   ++TT A D  +      G  D D  A          F+S RAR A+DD L+DPD+E+L GR +GFA  RL++AE AAR++ GE+E       RG+R   EG    G     +TPI+SGLASDAREFV  RV QARDG +EV  A  + R   ++A
Sbjct:   46 KLPLSVHTEIWSSTWKWYRASFAESFAWSRKRKEEAKKREAHEKMSTLQGMVKEAREITHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDLIRVSLSEFSTGYREARDEEIKRVMAMDKSMIQSFLSERAGEVKHATSVIADAILEKDGDAGGSSSREEGEQSSSAMRSAPAPPSHNNAAPCVSSVGRPQERPGTVSSTTAASDAESHPNNDPGHADLDGGATR--------FLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAEEAARIITGEEE------ERGERKRPEGVGEGGSDT--ETPIISGLASDAREFVAARVGQARDGAKEVVEAAMDARTQRRAA 386
[Close]
BLAST of mRNA_F-serratus_M_contig74.18648.1 vs. uniprot
Match: D8LCT5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCT5_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 4.720e-59
Identity = 121/268 (45.15%), Postives = 162/268 (60.45%), Query Frame = 1 
Query:    1 KLPLSVHLKVWSSTFMSYGQSFEESFSWDRRRQEQSIKDKAEKSVEALKEIAKDVREATHNTPEDIXXXXXXXXXXLAEIHENRDGLKSAAQEKLDLIRFSLSEFSTGYREARDQELKRIMAMDKNVLQGFVEERWEEVKRASSILSDALLSDXXXXXXXXXXA-------------AKPSVATATTKAGDVA-------TGAGGVGDKDKEAVLGTPSSPRD-------FMSQRARDALDDFLKDPDIEQLLGRVRGFAEGRLVQAE 723
            KLPLSVH ++WSST+  Y +SF ESF+W R+R+E++ K +A + +  L+ + K+ RE THN+PED+          + EIHENRD LKSAAQEKLDLIR SLSEFSTGYR+ARD+E+KR+MAMDK++LQ F+ ER  EVK A+S+++DA+L                          A PS+  A   A  VA       T +      D E+         D       F+S RAR A+DD L+DPD+E+L GR +GFA  RL++AE
Sbjct:   25 KLPLSVHTEIWSSTWKWYRESFAESFAWSRKRKEEAKKREAHEKMNTLRGMVKEAREVTHNSPEDLEKSKEALKELMEEIHENRDELKSAAQEKLDLIRVSLSEFSTGYRQARDEEIKRVMAMDKSMLQSFLSERAGEVKHATSLIADAILEKDGGAGGSSSREEGGRSSPALRSAPAPPSINNAAPDASSVARPREQPGTVSSTTAASDAESHPSNDPGHADLDGGATRFLSPRARRAVDDVLRDPDVERLAGRAKGFARERLLKAE 292
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig74.18648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJF4_9PHAE8.150e-7743.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCT5_ECTSI4.720e-5945.15Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig74contigF-serratus_M_contig74:499635..503511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006830.1
Exons4
Model size1035
Cds size1032
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig74.18648.1prot_F-serratus_M_contig74.18648.1Fucus serratus malepolypeptideF-serratus_M_contig74 499635..503510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932242.195173-CDS-F-serratus_M_contig74:499634..4998261622932242.195173-CDS-F-serratus_M_contig74:499634..499826Fucus serratus maleCDSF-serratus_M_contig74 499635..499826 +
1690964214.880819-CDS-F-serratus_M_contig74:499634..4998261690964214.880819-CDS-F-serratus_M_contig74:499634..499826Fucus serratus maleCDSF-serratus_M_contig74 499635..499826 +
1622932242.210691-CDS-F-serratus_M_contig74:501012..5010631622932242.210691-CDS-F-serratus_M_contig74:501012..501063Fucus serratus maleCDSF-serratus_M_contig74 501013..501063 +
1690964214.8991616-CDS-F-serratus_M_contig74:501012..5010631690964214.8991616-CDS-F-serratus_M_contig74:501012..501063Fucus serratus maleCDSF-serratus_M_contig74 501013..501063 +
1622932242.2328455-CDS-F-serratus_M_contig74:501806..5019011622932242.2328455-CDS-F-serratus_M_contig74:501806..501901Fucus serratus maleCDSF-serratus_M_contig74 501807..501901 +
1690964214.9120238-CDS-F-serratus_M_contig74:501806..5019011690964214.9120238-CDS-F-serratus_M_contig74:501806..501901Fucus serratus maleCDSF-serratus_M_contig74 501807..501901 +
1622932242.2519279-CDS-F-serratus_M_contig74:502816..5035101622932242.2519279-CDS-F-serratus_M_contig74:502816..503510Fucus serratus maleCDSF-serratus_M_contig74 502817..503510 +
1690964214.925692-CDS-F-serratus_M_contig74:502816..5035101690964214.925692-CDS-F-serratus_M_contig74:502816..503510Fucus serratus maleCDSF-serratus_M_contig74 502817..503510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig74.18648.1

>prot_F-serratus_M_contig74.18648.1 ID=prot_F-serratus_M_contig74.18648.1|Name=mRNA_F-serratus_M_contig74.18648.1|organism=Fucus serratus male|type=polypeptide|length=344bp
KLPLSVHLKVWSSTFMSYGQSFEESFSWDRRRQEQSIKDKAEKSVEALKE
IAKDVREATHNTPEDIEKSKKALRELLAEIHENRDGLKSAAQEKLDLIRF
SLSEFSTGYREARDQELKRIMAMDKNVLQGFVEERWEEVKRASSILSDAL
LSDDDDDSRKASSAAKPSVATATTKAGDVATGAGGVGDKDKEAVLGTPSS
PRDFMSQRARDALDDFLKDPDIEQLLGRVRGFAEGRLVQAEAAARVLKGE
DEAGRAQGTRGDRTDAEGAARSGPKISSDTPILSGLASDAREFVEGRVAQ
ARDGVREVAGAIAEVRASHQSAPGEEGGDDGVGGGDDNRRLKAG
back to top

mRNA from alignment at F-serratus_M_contig74:499635..503511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig74.18648.1 ID=mRNA_F-serratus_M_contig74.18648.1|Name=mRNA_F-serratus_M_contig74.18648.1|organism=Fucus serratus male|type=mRNA|length=3877bp|location=Sequence derived from alignment at F-serratus_M_contig74:499635..503511+ (Fucus serratus male)
AAGCTACCTTTGTCGGTTCATCTGAAAGTATGGTCGTCCACGTTCATGTC
CTACGGGCAATCGTTCGAGGAATCGTTCAGCTGGGACCGTCGGCGGCAGG
AACAGAGCATCAAGGACAAGGCGGAGAAGAGCGTGGAGGCGCTGAAGGAG
ATCGCCAAGGACGTTCGGGAGGCCACTCACAACACTCCCGAGGTACGCTC
ACAACACTATTGTATGCAGTACATTCACAGCACTATATCGTATGCAGTAC
ACTCACAACACACTATATCGTATCCAGTACACTCACAACACCATCGTATG
CAGTGCACTTAATCGCATTCTGTACACTATATCATATGATGTATTTATCA
CATGCCGTACACTGTATTGCATGCTGTGCACTACAATATGATGTACACTG
ACTGTATTGCATGCATGCTGTACACtaccggTATATGGTATGCTGTTGTT
GGTGGCAGTGGTGTTGCTGTACACTATATGGTATGAAACAATGCAGAGGG
AGGGTTGCGTTTTGCCAGTTGAAGTTTTATGTAGGGCGCGCAGCAGTGCC
ACTCCCCCTCTCTCTCTCTCTCTCTCTCTGACATCTCACCCGCTGTTTAC
AACACTTCATCTTTTACATAAAAAGTAGACTAAATTGTTTAACTTTTCAA
AATATTTTTGTTTCTCTTTTTTTCTTTTTTTTTTTTTTTTTTCTTTTTTT
CTTTTTTTTTCTTTCTTCCTCCCTTTCCCCCCCCTGTCATTTGTATATAT
GCACACATTATATACTGTATATGTCATATACTgtaccaGTATCTTGTTTT
CAGATGCGACCGAGGAAAAAAAGAGTAATTGTCTGTTTCTCCTTCCCTTA
CTTACCACGTGTTATAAATCTCGTACACTAACGGAGACTATAAAACATAT
ACCTGGAATAGTAATCGTAAGGTTTCTATGAGTACGACCTCGGCGTTATC
GGGCCAATTCGATCCTGATCCTGCGCTAAAAAAGGAGAATTAATAGTAAT
AGTACAGCACAATTTAGCGCAAGCCACAACGCCGGGATTGGGGGGGAGTT
TTTACAAACCCTTGCGGCGTTCTTTCGAAAAGTTTGAGTACCTGTTCTTT
TGTAGGAGGGTCATCACCCCCACCCTCCAGCCCCCCTCATTGTCTTGTAT
AAAACCAAGGCTCTAATTATTGTTCCTTAGGACAGTCCGAGTCTGACCCC
CACGAATATGTCTCAACAATTTGTCTATCGACTGAAATTTTCCGCCGGGT
ACCGTAAGTACGTACTGCACCGCTGAAATATGAAACATGGACGCTGCTGC
GCCCTCTACCCGTTGTTTTTTGGGGTTTCGCGTTACTGTTTCGGGGGGTT
TTGGTTGATTTTCCTCGCGAACGCGCAGGATATCGAAAAATCCAAGAAGG
CGCTGAGGGAGCTCCTGGCCGAGATTCACGTGAGGCACACACGCTAGCGT
TTGAGATGTCTAAATTGTAGCTCTTCTCTCCTAGTAGTAGCGATTGCTTC
GGTCGGGAGATGTGTTGCCCCACGAGCCAGCGGTACGCGATGATGGGAGA
ATCGTGGTTCAAATCTTGCGTTGCGTGTGGCCGTCGGCGCGTCCTGTATA
TATATATATATATATATTAATAATCTATATAGAAAACTCGATCGAGCGTC
GTCGGTCCTTGCACTGATAACATTATGTACGTGAAGAGTCACATATGAGC
AGTCTGTGAGCAGGGCTGCGGTGCGAAATGGGTCAATCTCTCGCGCGGTG
TCACGATTTTGTTTTTTAAGCCACCCTAGACGACCTTGAAGGCGCAGAGG
GCCGGCCATACACGCGCTAGTCTCTCTCTATGTTACCGAATGGTTAGTCT
AGAGCCGTACGTCGTTACAATCTCGCGTTCTTGTTGAGCACCAAAGGAAC
GCTTGCTGACTGCCGTAAGTCTCTGCCCAAAACGTTGCATACTGTCGAAC
ATACTGTCGAGGGCCGAAGAAAAAAACCAACATATCTCGTGGAAAGCCCT
GCCTTTTTTATTTTTCGCCAGCACGTTTGTATCCCTGCGTTGCTCAGTTT
TTTCGATCTGCTGATGAAAATATCCGGCCGCGCCACAGTCGGTACCCCGA
CCGCGGCTCTCCATGCTGACCTCTCCTAGTTTTTTATTTGTTTTTTTGTC
CCAATGTGTGTTTTTTGTGCAGGAGAACCGAGACGGGCTCAAGTCTGCGG
CCCAAGAGAAGCTCGACTTGATCCGTTTTTCGCTCTCCGAATTTTCCACG
GGGTATCGCGAAGCTCGGTGAGCAAAAAGTGGCGACGAACTTCACGAATA
CCGATAGGACCGGGTCGAGAACCCGAACGGAACTGACCTGAACCGAACTG
AACCCAACCTAAAACAGATAGATACCGACGGAATCGAAGCCGAATCGTAC
CGAACCGAATGAAGTAGAGCCGAAGTGAGCCAACCGAATGAGCTACAACC
CCCCAACGAGACCAGAACGAACCAACCGTGAAACATTCGAATCAGAGTGA
AACTAACGGAACGGAACGGACGGAACGGATTCACAACATCAGCGTTGGGT
GATAGAATGATTGGAATGATTGATGCTTTTGCTCAAGTTTTATCCCCCAC
CCCACTCCACCCCACCAATCATTGTGTCCGGTATACCGGGTAACTACGCC
CGTATTCAAATTAAGAAACAAGTACAAAATATAATACAAATTTATTTATT
TCTTCCTCTCGAAAGATTCGGTGTACTACACCAAAGGAGTATGTCTGTAG
ATAGCTCTCTATATATATATACTTATTTTTGAGGTACGGTTGGTTTTATG
TATCGCCTACTTGGTACCGTGTGGCAGCATGTACTACTCAATGCAAACGC
CCCCACGGCACGGGGAGAGATCCTCATTCACCACTTGTTCTCTTGAATAC
AGCAAACATTGGAGCTCGAAAATATTTTGGTCGAAACGCCCCTCTTGGTA
AGATGTTCCCATCGCATCGTTGTTTGATGGAAGGAGTCTTGCTCTATAAT
CAAGACAAACGTGAAAGAGGGTTTCCCCGGGGGGGAGGCGTTTTGCGAGC
ATTACGTTACATGGCACAGATATTGGGTTTCACCACGCCGTCCTGACGTC
TTGACATCTTCCTCTTCCCTTCGTCTCTCTTTTTCTTTCTTTATAATCAT
ACATTATAATTATATATATATATCGTAAACAGGGACCAAGAATTAAAGCG
GATAATGGCGATGGACAAGAACGTGCTCCAGGGCTTCGTCGAAGAGCGGT
GGGAGGAGGTCAAGCGCGCGTCTTCGATTCTTTCCGACGCTCTCCTCTCC
GACGACGACGACGACAGCCGCAAGGCATCATCTGCCGCCAAGCCCTCCGT
GGCGACGGCGACGACGAAGGCTGGCGATGTAGCGACGGGCGCAGGAGGCG
TCGGTGACAAGGACAAGGAGGCGGTGCTTGGCACCCCGTCATCGCCCCGC
GACTTTATGTCCCAGCGGGCGCGAGACGCGTTGGACGATTTCCTGAAGGA
CCCGGACATCGAGCAGCTCCTGGGGCGCGTGCGAGGGTTCGCGGAGGGAA
GGCTGGTGCAGGCGGAAGCGGCCGCCCGGGTTCTGAAGGGGGAAGACGAA
GCGGGCAGGGCACAGGGAACCCGGGGGGATCGCACCGATGCGGAAGGTGC
CGCACGATCAGGCCCCAAAATCTCTTCTGACACCCCGATTCTGTCAGGGC
TGGCAAGCGATGCTCGGGAGTTCGTAGAGGGGAGGGTGGCTCAGGCTAGA
GACGGGGTGCGAGAAGTAGCCGGCGCGATTGCGGAGGTTCGGGCATCGCA
CCAGTCGGCGCCTGGAGAGGAGGGTGGCGATGACGGCGTGGGTGGTGGTG
ATGACAACAGGAGGTTGAAGGCTGGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig74:499635..503511+

>mRNA_F-serratus_M_contig74.18648.1 ID=mRNA_F-serratus_M_contig74.18648.1|Name=mRNA_F-serratus_M_contig74.18648.1|organism=Fucus serratus male|type=CDS|length=2064bp|location=Sequence derived from alignment at F-serratus_M_contig74:499635..503511+ (Fucus serratus male)
AAGCTACCTTTGTCGGTTCATCTGAAAGTATGGTCGTCCACGTTCATGTC
CTACGGGCAATCGTTCGAGGAATCGTTCAGCTGGGACCGTCGGCGGCAGG
AACAGAGCATCAAGGACAAGGCGGAGAAGAGCGTGGAGGCGCTGAAGGAG
ATCGCCAAGGACGTTCGGGAGGCCACTCACAACACTCCCGAGAAGCTACC
TTTGTCGGTTCATCTGAAAGTATGGTCGTCCACGTTCATGTCCTACGGGC
AATCGTTCGAGGAATCGTTCAGCTGGGACCGTCGGCGGCAGGAACAGAGC
ATCAAGGACAAGGCGGAGAAGAGCGTGGAGGCGCTGAAGGAGATCGCCAA
GGACGTTCGGGAGGCCACTCACAACACTCCCGAGGATATCGAAAAATCCA
AGAAGGCGCTGAGGGAGCTCCTGGCCGAGATTCACGATATCGAAAAATCC
AAGAAGGCGCTGAGGGAGCTCCTGGCCGAGATTCACGAGAACCGAGACGG
GCTCAAGTCTGCGGCCCAAGAGAAGCTCGACTTGATCCGTTTTTCGCTCT
CCGAATTTTCCACGGGGTATCGCGAAGCTCGGAGAACCGAGACGGGCTCA
AGTCTGCGGCCCAAGAGAAGCTCGACTTGATCCGTTTTTCGCTCTCCGAA
TTTTCCACGGGGTATCGCGAAGCTCGGGACCAAGAATTAAAGCGGATAAT
GGCGATGGACAAGAACGTGCTCCAGGGCTTCGTCGAAGAGCGGTGGGAGG
AGGTCAAGCGCGCGTCTTCGATTCTTTCCGACGCTCTCCTCTCCGACGAC
GACGACGACAGCCGCAAGGCATCATCTGCCGCCAAGCCCTCCGTGGCGAC
GGCGACGACGAAGGCTGGCGATGTAGCGACGGGCGCAGGAGGCGTCGGTG
ACAAGGACAAGGAGGCGGTGCTTGGCACCCCGTCATCGCCCCGCGACTTT
ATGTCCCAGCGGGCGCGAGACGCGTTGGACGATTTCCTGAAGGACCCGGA
CATCGAGCAGCTCCTGGGGCGCGTGCGAGGGTTCGCGGAGGGAAGGCTGG
TGCAGGCGGAAGCGGCCGCCCGGGTTCTGAAGGGGGAAGACGAAGCGGGC
AGGGCACAGGGAACCCGGGGGGATCGCACCGATGCGGAAGGTGCCGCACG
ATCAGGCCCCAAAATCTCTTCTGACACCCCGATTCTGTCAGGGCTGGCAA
GCGATGCTCGGGAGTTCGTAGAGGGGAGGGTGGCTCAGGCTAGAGACGGG
GTGCGAGAAGTAGCCGGCGCGATTGCGGAGGTTCGGGCATCGCACCAGTC
GGCGCCTGGAGAGGAGGGTGGCGATGACGGCGTGGGTGGTGGTGATGACA
ACAGGAGGTTGAAGGCTGGGGGACCAAGAATTAAAGCGGATAATGGCGAT
GGACAAGAACGTGCTCCAGGGCTTCGTCGAAGAGCGGTGGGAGGAGGTCA
AGCGCGCGTCTTCGATTCTTTCCGACGCTCTCCTCTCCGACGACGACGAC
GACAGCCGCAAGGCATCATCTGCCGCCAAGCCCTCCGTGGCGACGGCGAC
GACGAAGGCTGGCGATGTAGCGACGGGCGCAGGAGGCGTCGGTGACAAGG
ACAAGGAGGCGGTGCTTGGCACCCCGTCATCGCCCCGCGACTTTATGTCC
CAGCGGGCGCGAGACGCGTTGGACGATTTCCTGAAGGACCCGGACATCGA
GCAGCTCCTGGGGCGCGTGCGAGGGTTCGCGGAGGGAAGGCTGGTGCAGG
CGGAAGCGGCCGCCCGGGTTCTGAAGGGGGAAGACGAAGCGGGCAGGGCA
CAGGGAACCCGGGGGGATCGCACCGATGCGGAAGGTGCCGCACGATCAGG
CCCCAAAATCTCTTCTGACACCCCGATTCTGTCAGGGCTGGCAAGCGATG
CTCGGGAGTTCGTAGAGGGGAGGGTGGCTCAGGCTAGAGACGGGGTGCGA
GAAGTAGCCGGCGCGATTGCGGAGGTTCGGGCATCGCACCAGTCGGCGCC
TGGAGAGGAGGGTGGCGATGACGGCGTGGGTGGTGGTGATGACAACAGGA
GGTTGAAGGCTGGG
back to top