mRNA_F-serratus_M_contig738.18637.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: D7FPJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPJ0_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.040e-42 Identity = 82/101 (81.19%), Postives = 93/101 (92.08%), Query Frame = 1
Query: 112 GGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMGGGGSSS-TEHAEQPSAQSNQQPQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAKRSYN 411
GGG L+GMASTMAQGFAFG+GS++AHRAVGAVMGGGGSS+ E A++ + Q+ QQP VDPCD+DKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAK+SYN
Sbjct: 36 GGGMLAGMASTMAQGFAFGTGSSIAHRAVGAVMGGGGSSAPVEQAQEQAPQAYQQPPVDPCDVDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAKKSYN 136
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A7S2PCQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCQ3_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.850e-18 Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 64 APRPAAKPPAQQQQGSGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMG--GGGSSSTEHAEQPSAQSN--QQPQV-DPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQ 387
A RPA+ P A QQ SGGG +SG+AST+AQG AFG+GSA+AHRAVGAV G GG E Q S Q QQP + C DKQ F +CLQ N D ++CQF+++AL+TCQ
Sbjct: 19 ARRPASTP-APAQQSSGGGMMSGLASTVAQGMAFGTGSAIAHRAVGAVAGSFGGSGGDAEIPAQTSQQMGYEQQPTLASACADDKQMFYECLQMNKGDQSSCQFLYDALKTCQ 130
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: H3G8I8_PHYRM (CHCH domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=H3G8I8_PHYRM) HSP 1 Score: 91.3 bits (225), Expect = 5.510e-18 Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 1 MARSRRSAPAXXXXXXXXXXXA-PRPAAKPPAQQQQG---------SGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMG---GGGSSSTEHAEQPSAQSNQQ---PQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAKRSY 408
M RSR S PA A PR +A PA+ Q SGGG +SG+ T+AQG AFG+GSA+AHRAVGAV G GG + E P+AQ +Q PQ + C D+++F +CL NN+ND+++CQF + + CQM+ + ++
Sbjct: 1 MGRSRSSRPAARPAPRRAPAPAQPRRSAPAPARTQAAPXXXXXXXXSGGGMMSGLMGTVAQGMAFGTGSAIAHRAVGAVAGSFSGGSDAPQEQEAAPAAQDHQTAQPPQQNQCGADQKSFLECLNNNSNDISSCQFYLDQFKQCQMQQQSTF 152
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A7S1XNA6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNA6_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 6.790e-18 Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 64 APRPAAKPPAQQQQGSGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMGGGGSSSTEHAEQPSAQSNQQPQV-----------DPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQM 390
A RP A+ PAQ QQ SGG +SG+ T+AQGFAFG+GSAVAHRAVGAV S S + P+A QQPQ + C +D+QNF QCL NN + ACQF F++LQ CQ
Sbjct: 41 AARPQAQVPAQPQQQSGG-MMSGLLGTVAQGFAFGTGSAVAHRAVGAVA---NSFSGSGEQAPAAGMEQQPQFQQQAPIQQVSQNACSVDQQNFMQCLTENNGNAQACQFFFDSLQQCQQ 156
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A4D9CYI4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYI4_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 9.490e-18 Identity = 76/149 (51.01%), Postives = 90/149 (60.40%), Query Frame = 1
Query: 1 MARSRRSAPAXXXXXXXXXXX------APRPAAKPPAQQQQGSGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMGG-GGSSSTEH-----AEQPSAQSNQ----QPQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAK 399
MARSR S PA XXXXXX AP+ +A PPA Q GGG +SG AST+AQGFAFG+GSAVAHRAVGA G G S H A+QP+ Q Q PC +D QNF CLQ N +V AC F++E+LQ CQ +A+
Sbjct: 1 MARSRSSRPAPARAXXXXXXRPSSVPAAPQRSA-PPAPHQPQQGGGMMSGFASTIAQGFAFGTGSAVAHRAVGAAAGAFSGDSEAPHQQEAYAQQPAHQQQYAAPAQGGQGPCALDGQNFQACLQANPGNVDACTFLYESLQQCQRQAQ 148
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A7S1UZU7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZU7_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.450e-17 Identity = 62/125 (49.60%), Postives = 75/125 (60.00%), Query Frame = 1
Query: 64 APRPAAKPPAQQQQGSGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMGG--GGSSSTEHA------EQPSAQSNQQPQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQM-EAKRSYN 411
A +P A PPA QQ SGGG LSG+ ST+AQG AFG+GSA+AHRAVGAV GG GG E A + + S Q C DKQ F +CLQ N D +C F+++ LQTCQ E S+N
Sbjct: 7 AQKPKAAPPAVPQQSSGGGLLSGIGSTIAQGMAFGTGSAIAHRAVGAVAGGLSGGGEGGEAAPVEQYGDSLNPGSPTQQLSGACAGDKQMFFECLQVNKGDQQSCSFLYDQLQTCQRNETSMSFN 131
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A7R9VMR5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VMR5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.660e-17 Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 85 PPAQQQQGSGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAV---MGGGGSSSTEHAEQPSA-------QSNQQPQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQ 387
PPAQQ GGG +SG+ ST+AQG AFG+GSA+AHRAVGAV GGGG + + + +A Q Q PCD DKQ F +CLQ N D +C+F+++ LQTCQ
Sbjct: 38 PPAQQS--GGGGMMSGIGSTIAQGMAFGTGSAIAHRAVGAVAGSFGGGGEEAPQDSVAGAAPADAYGQQQQMQQMAGPCDQDKQMFFECLQMNKGDQESCRFLYDTLQTCQ 146
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A7S2CIA8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CIA8_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.060e-17 Identity = 52/100 (52.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 112 GGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMGGGGSSSTEHAEQPS-AQSNQQPQ--VDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAKR 402
GGG +SG+ T+AQG AFG+GSA+AHRAVGAV GS + EQP+ AQ++QQPQ + C+ D++NF CLQ+N+ DV +C F+ LQ CQ +AK+
Sbjct: 60 GGGMMSGLMGTVAQGMAFGTGSAIAHRAVGAVA---GSMMGGNEEQPAVAQASQQPQSSIQSCEYDQKNFYDCLQSNHGDVNSCDMYFQQLQACQAQAKQ 156
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A7S1E0N2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0N2_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 7.950e-17 Identity = 57/104 (54.81%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 94 QQQQGSGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMG---GGGSSSTE---HAEQPSAQSNQQPQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQ 387
+QQ SGGG LSG+ ST+AQG AFG+GSA+AH+AVGAV G GGG++ E + QP AQ QQP C DKQ F +CLQ N D AC F++E LQ CQ
Sbjct: 37 RQQASSGGGMLSGIGSTIAQGMAFGTGSAIAHQAVGAVAGSLSGGGAAPAEQQYNETQPMAQ-QQQPIQGSCAQDKQMFFECLQVNKGDQQACSFLYENLQACQ 139
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Match: A0A421EVM3_9STRA (CHCH domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EVM3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 2.250e-16 Identity = 49/106 (46.23%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 109 SGGGFLSGMASTMAQGFAFGSGSAVAHRAVGAVMGG--GGSSSTEHAEQPSAQSNQQ----PQVDPCDMDKQNFGQCLQNNNNDVTACQFVFEALQTCQMEAKRSY 408
SGGG +SG+ T+AQG AFG+GSA+AHRAVGAV G GGS + + E AQ + Q PQ + C D+++F +CL NN+ND+++CQF + + CQ++ + S+
Sbjct: 42 SGGGMMSGLMGTVAQGMAFGTGSAIAHRAVGAVAGSMSGGSDAPQQQEAAPAQQDYQAAQPPQQNQCGADQKSFLECLNNNSNDISSCQFYLDQFKQCQLQQQSSF 147 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig738.18637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig738.18637.1 >prot_F-serratus_M_contig738.18637.1 ID=prot_F-serratus_M_contig738.18637.1|Name=mRNA_F-serratus_M_contig738.18637.1|organism=Fucus serratus male|type=polypeptide|length=138bp MARSRRSAPARKAAPARSAPPAPRPAAKPPAQQQQGSGGGFLSGMASTMAback to top mRNA from alignment at F-serratus_M_contig738:236553..243263- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig738.18637.1 ID=mRNA_F-serratus_M_contig738.18637.1|Name=mRNA_F-serratus_M_contig738.18637.1|organism=Fucus serratus male|type=mRNA|length=6711bp|location=Sequence derived from alignment at F-serratus_M_contig738:236553..243263- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig738:236553..243263- >mRNA_F-serratus_M_contig738.18637.1 ID=mRNA_F-serratus_M_contig738.18637.1|Name=mRNA_F-serratus_M_contig738.18637.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig738:236553..243263- (Fucus serratus male)back to top |