mRNA_F-serratus_M_contig738.18631.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig738.18631.1
Unique NamemRNA_F-serratus_M_contig738.18631.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig738.18631.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.820e-29
Identity = 83/177 (46.89%), Postives = 105/177 (59.32%), Query Frame = 3 
Query:   45 AENMRLRVGTSGGLPLDW-TSWRSLGLESSHAASSPSFFA----VV*AAHLPPVPMEIAETFSPEALFGRGNIRPLGVMGAWDRVEQLEGYSGRGVLPNDLCNRLAEALAGGTMTRGSPSPRRTLVRDALEKRV------ESAVGPPVAAHFVVASGQNRLAQRDD--IVPGLLEAE 536
            A  ++  +  SG LPLDW T   S G+ S    ++P F      V+ AA LPP+P ++AE FSP  L GR   RPLG   AW+RVE+LE Y GRG++  +L  RLAEALAGG M +G P P RTLVRDA+ +RV      E A   P+  HF+ + GQ+RL        VP LLEAE
Sbjct: 1579 AGRLKTALEASGALPLDWETVLPSFGMPSR---TNPGFAGGADVVLRAAFLPPIPPKLAEAFSPNVLAGREGARPLGPEVAWNRVEELETYLGRGLMAQELRFRLAEALAGGVMMKGPPPPWRTLVRDAIARRVVLARSGEGAGLRPLVVHFIASFGQDRLEGETGRGAVPRLLEAE 1752
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig738.18631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G867_ECTSI4.820e-2946.89PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig738contigF-serratus_M_contig738:48595..49944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7G867
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA transport
EggNOG OGsCOG5079@1,KOG1860@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size909
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig738.18631.1prot_F-serratus_M_contig738.18631.1Fucus serratus malepolypeptideF-serratus_M_contig738 48789..49742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932238.2152073-UTR-F-serratus_M_contig738:48594..487881622932238.2152073-UTR-F-serratus_M_contig738:48594..48788Fucus serratus maleUTRF-serratus_M_contig738 48595..48788 +
1690964212.8885963-UTR-F-serratus_M_contig738:48594..487881690964212.8885963-UTR-F-serratus_M_contig738:48594..48788Fucus serratus maleUTRF-serratus_M_contig738 48595..48788 +
1622932238.268398-UTR-F-serratus_M_contig738:49742..499441622932238.268398-UTR-F-serratus_M_contig738:49742..49944Fucus serratus maleUTRF-serratus_M_contig738 49743..49944 +
1690964212.925104-UTR-F-serratus_M_contig738:49742..499441690964212.925104-UTR-F-serratus_M_contig738:49742..49944Fucus serratus maleUTRF-serratus_M_contig738 49743..49944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932238.2290304-CDS-F-serratus_M_contig738:48788..491421622932238.2290304-CDS-F-serratus_M_contig738:48788..49142Fucus serratus maleCDSF-serratus_M_contig738 48789..49142 +
1690964212.9034874-CDS-F-serratus_M_contig738:48788..491421690964212.9034874-CDS-F-serratus_M_contig738:48788..49142Fucus serratus maleCDSF-serratus_M_contig738 48789..49142 +
1622932238.2476509-CDS-F-serratus_M_contig738:49583..497421622932238.2476509-CDS-F-serratus_M_contig738:49583..49742Fucus serratus maleCDSF-serratus_M_contig738 49584..49742 +
1690964212.914127-CDS-F-serratus_M_contig738:49583..497421690964212.914127-CDS-F-serratus_M_contig738:49583..49742Fucus serratus maleCDSF-serratus_M_contig738 49584..49742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig738.18631.1

>prot_F-serratus_M_contig738.18631.1 ID=prot_F-serratus_M_contig738.18631.1|Name=mRNA_F-serratus_M_contig738.18631.1|organism=Fucus serratus male|type=polypeptide|length=171bp
MEIAETFSPEALFGRGNIRPLGVMGAWDRVEQLEGYSGRGVLPNDLCNRL
AEALAGGTMTRGSPSPRRTLVRDALEKRVESAVGPPVAAHFVVASGQNRL
AQRDDIVPGLLEAEDLRVPPSVSPSPALLKRVTPISKKQRRTRSPHRSVL
FGKEEPADDLSCMDVDQGLP*
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mRNA from alignment at F-serratus_M_contig738:48595..49944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig738.18631.1 ID=mRNA_F-serratus_M_contig738.18631.1|Name=mRNA_F-serratus_M_contig738.18631.1|organism=Fucus serratus male|type=mRNA|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig738:48595..49944+ (Fucus serratus male)
CTCCCATCCTGGAGTCGGAGGGCTTTGGTGTCTGGAAAAATACAGCGGAA
AATATGCGTTTGAGGGTGGGAACCTCTGGTGGTCTCCCTCTAGATTGGAC
TTCGTGGCGATCCTTGGGGTTGGAATCTTCCCACGCTGCATCATCGCCCT
CCTTCTTCGCTGTGGTGTAAGCCGCTCATTTGCCTCCAGTACCGATGGAG
ATCGCGGAGACATTCAGTCCGGAGGCACTGTTCGGGCGAGGAAACATACG
TCCCTTAGGGGTTATGGGTGCCTGGGACCGAGTGGAGCAGTTGGAGGGCT
ACTCAGGTCGAGGTGTGCTGCCGAACGATCTCTGCAATCGGTTGGCAGAG
GCTTTGGCCGGTGGGACGATGACGAGGGGTTCTCCGTCGCCGCGGAGAAC
GCTCGTGCGAGATGCGCTGGAGAAGAGGGTTGAGTCGGCTGTTGGGCCTC
CCGTGGCGGCTCACTTCGTCGTTGCTTCTGGCCAGAACCGCCTGGCGCAA
AGGGACGATATCGTTCCAGGATTGCTGGAAGCCGAGGACTTACGAGTCGT
GAGTTGTGCAACTGACACTCCGCACAAGTCCTTGTTCTCCGCTGCGAACA
CAGTGTTGAGGTCCGAGGCTTACTATTTATTCCGGTCGCGGGACTCCAAG
CTTTGAGCGAGCATGCTGATGGTTATTTGTACTATTATACTAATATTAAC
AGTAGCTTGGAAGCGCCCCCTTCTTGAAAACACAAGATTTCTATTATTTA
GTAGACGTTTTGGTGCAATGCCCCACCAGGAATATCCTCAGTTAGGCCCT
GCATAATCATGTGTTCCTTCTCAATTTACTACTATAGTGAGTGCACTTTG
CCGCGCTCACTTCCTAACCCTATGCGCCACAGTCTATGAAACTCCGACTC
CATCAATATTACTATTATTACTAATTAGAACTGGTGGCGCCGGCGTTTCC
ACTCAATTCCTCGACCTTCCTCTCTCCTTTACTTTGCAGCCGCCGTCAGT
TTCCCCGTCGCCAGCGTTGCTCAAGCGCGTCACTCCGATCAGCAAGAAGC
AAAGGCGAACACGGTCTCCTCACCGCTCTGTACTTTTCGGCAAAGAGGAG
CCCGCAGACGACCTGTCTTGCATGGATGTCGACCAGGGCTTGCCTTAAAT
CCTTTCTTAGGAGCAAGTTGCTTTGAGGAGGGAGGGAGCGTTATAACTGG
TCCGTACCGCTGACATGGGCTTCTTGAGTTTTGAGGTGGTCGAACTACCG
CAAGAAAGTTCACGGTCAGCCTCCATTACCATCGCCATCGAGCCTCCTTC
CTTGATGGTCGGCCATGCTCTTTGAAGCCCAATCTCCCCTTGGTCACCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig738:48595..49944+

>mRNA_F-serratus_M_contig738.18631.1 ID=mRNA_F-serratus_M_contig738.18631.1|Name=mRNA_F-serratus_M_contig738.18631.1|organism=Fucus serratus male|type=CDS|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig738:48595..49944+ (Fucus serratus male)
ATGGAGATCGCGGAGACATTCAGTCCGGAGGCACTGTTCGGGCGAGGAAA
CATACGTCCCTTAGGGGTTATGGGTGCCTGGGACCGAGTGGAGCAGTTGG
AGGGCTACTCAGGTCGAGGTGTGCTGCCGAACGATCTCTGCAATCGGTTG
GCAGAGGCTTTGGCCGGTGGGACGATGACGAGGGGTTCTCCGTCGCCGCG
GAGAACGCTCGTGCGAGATGCGCTGGAGAAGAGGGTTGAGTCGGCTGTTG
GGCCTCCCGTGGCGGCTCACTTCGTCGTTGCTTCTGGCCAGAACCGCCTG
GCGCAAAGGGACGATATCGTTCCAGGATTGCTGGAAGCCGAGGACTTACG
AGTCATGGAGATCGCGGAGACATTCAGTCCGGAGGCACTGTTCGGGCGAG
GAAACATACGTCCCTTAGGGGTTATGGGTGCCTGGGACCGAGTGGAGCAG
TTGGAGGGCTACTCAGGTCGAGGTGTGCTGCCGAACGATCTCTGCAATCG
GTTGGCAGAGGCTTTGGCCGGTGGGACGATGACGAGGGGTTCTCCGTCGC
CGCGGAGAACGCTCGTGCGAGATGCGCTGGAGAAGAGGGTTGAGTCGGCT
GTTGGGCCTCCCGTGGCGGCTCACTTCGTCGTTGCTTCTGGCCAGAACCG
CCTGGCGCAAAGGGACGATATCGTTCCAGGATTGCTGGAAGCCGAGGACT
TACGAGTCCCGCCGTCAGTTTCCCCGTCGCCAGCGTTGCTCAAGCGCGTC
ACTCCGATCAGCAAGAAGCAAAGGCGAACACGGTCTCCTCACCGCTCTGT
ACTTTTCGGCAAAGAGGAGCCCGCAGACGACCTGTCTTGCATGGATGTCG
ACCAGGGCTTGCCTTAACCGCCGTCAGTTTCCCCGTCGCCAGCGTTGCTC
AAGCGCGTCACTCCGATCAGCAAGAAGCAAAGGCGAACACGGTCTCCTCA
CCGCTCTGTACTTTTCGGCAAAGAGGAGCCCGCAGACGACCTGTCTTGCA
TGGATGTCGACCAGGGCTTGCCTTAA
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