mRNA_F-serratus_M_contig738.18628.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig738.18628.1
Unique NamemRNA_F-serratus_M_contig738.18628.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig738.18628.1 vs. uniprot
Match: D7G867_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G867_ECTSI)

HSP 1 Score: 333 bits (854), Expect = 2.950e-93
Identity = 224/527 (42.50%), Postives = 287/527 (54.46%), Query Frame = 2 
Query:  758 LREIGHLKTYPSFGQEGTDGRANWV*RSLRK-SPTDACVREPHQHGGRESAWAIARAFASSRGDELGGFCSHPRDQDRFFWSPLHPKPDWSKAREDLGCALRCTDSEWGRFLCWWC---YLFRIQSGAEGRKGG*ATPL*GTR-RTGCLGGAWP---TRSGPARGVSVRVTVVGLHEFESKSKEAAASLEGLVFSGEAEEDSSDDLASNVAELSGQAPKQPLVATRSLQEMFKTAISRATTDGRYASAAGLILPASRFEDPPLEAVVRAAARATAHVCRLLERKADAWPMREFAVVISSVGQPGHVDREHRMEVAFVPGAARPVVGELLRSPILESE-GFGVWKNTATNMCLRVGTSGGHWSLWRFLGLEPSHAAPS---PSFFA----VMEAAHLPPVPMEIAETFSPEALFGQRNRRPLGAMGAWDRVEQLEGYLGRGVLPNDLRNRLAEALAGGTMMRGSPPPWRTLVGDALEKRI------ESAVGPPVAAHFVVASGQDRLAQRDD--IVPGLLKAEDFRVP 2266
             RE+  L+T      E +     W+   +++ S  + C  EP      +   A    FA++           PRDQ+RFFWSPLHPKPDWS+A+ +L  AL       G           +  ++     R  G A P    R R   L  AW     R     G S RV +VGLHEFES+SK AAA   G+VF+G  E+  S+D+A  +AEL+ +AP+ PLVATR LQE+  TA+SRATTD RYA A GL LP SR+EDPPL  VV AA RAT HVC LL R++ AWP+ EFA   + V          R E+ +VPGAAR   GE+  SP+   +    V  + A  +   +  SG     W  +   PS   PS   P F      V+ AA LPP+P ++AE FSP  L G+   RPLG   AW+RVE+LE YLGRG++  +LR RLAEALAGG MM+G PPPWRTLV DA+ +R+      E A   P+  HF+ + GQDRL        VP LL+AE F  P
Sbjct: 1250 FRELRELRTTTPARSEKSSAPPQWIHLCVQRVSIHEGCRLEPSSQLSEKLKAASVVIFAAT-----------PRDQERFFWSPLHPKPDWSQAKAELRLALESASPRGGGTASVGVPVLVVIPVKDSVLQRDAGCANPAAFDRTRERILEDAWEGLGLREVAQYGCSFRVALVGLHEFESRSKAAAARGAGVVFAGSLEDACSEDVAGKLAELAERAPRHPLVATRCLQELLNTAVSRATTDDRYADAVGLPLPPSRYEDPPLGCVVEAANRATEHVCHLLVRRSSAWPIAEFAATATVV------HGRQRREMMYVPGAARAAGGEIAGSPLDAPDCATHVEPSDAGRLKTALEASGALPLDWETV--LPSFGMPSRTNPGFAGGADVVLRAAFLPPIPPKLAEAFSPNVLAGREGARPLGPEVAWNRVEELETYLGRGLMAQELRFRLAEALAGGVMMKGPPPPWRTLVRDAIARRVVLARSGEGAGLRPLVVHFIASFGQDRLEGETGRGAVPRLLEAEIFGGP 1757
[Close]
BLAST of mRNA_F-serratus_M_contig738.18628.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.020e-18
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   10 KCTSCGLQGAVIGCHASSCHVNTHYACAVKEGWEFGEPNVNGKIFLCVNHRLERQVRFEKKTPAKKASKKT 222
            KCTSCG QGA+I CH  SC V THY CA +EGW+FG  + +GKIFLCV HR E QVRFE+K PAK+  +K+
Sbjct: 3095 KCTSCGKQGALIPCHVQSCSVTTHYGCARREGWKFGGHDSDGKIFLCVMHRNEGQVRFERKAPAKRGPRKS 3165
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig738.18628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G867_ECTSI2.950e-9342.50PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G873_ECTSI8.020e-1863.38Chromodomain-helicase-DNA-binding protein 8 n=2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig738contigF-serratus_M_contig738:483..12242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue4.4e-43
Seed eggNOG ortholog2880.D7G867
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA transport
EggNOG OGsCOG5079@1,KOG1860@2759
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size2607
Cds size1098
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig738.18628.1prot_F-serratus_M_contig738.18628.1Fucus serratus malepolypeptideF-serratus_M_contig738 1218..10225 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932237.7171478-UTR-F-serratus_M_contig738:482..6201622932237.7171478-UTR-F-serratus_M_contig738:482..620Fucus serratus maleUTRF-serratus_M_contig738 483..620 +
1690964212.6563241-UTR-F-serratus_M_contig738:482..6201690964212.6563241-UTR-F-serratus_M_contig738:482..620Fucus serratus maleUTRF-serratus_M_contig738 483..620 +
1622932237.7357929-UTR-F-serratus_M_contig738:1209..12171622932237.7357929-UTR-F-serratus_M_contig738:1209..1217Fucus serratus maleUTRF-serratus_M_contig738 1210..1217 +
1690964212.6687143-UTR-F-serratus_M_contig738:1209..12171690964212.6687143-UTR-F-serratus_M_contig738:1209..1217Fucus serratus maleUTRF-serratus_M_contig738 1210..1217 +
1622932237.88108-UTR-F-serratus_M_contig738:10225..103571622932237.88108-UTR-F-serratus_M_contig738:10225..10357Fucus serratus maleUTRF-serratus_M_contig738 10226..10357 +
1690964212.7394333-UTR-F-serratus_M_contig738:10225..103571690964212.7394333-UTR-F-serratus_M_contig738:10225..10357Fucus serratus maleUTRF-serratus_M_contig738 10226..10357 +
1622932237.8951902-UTR-F-serratus_M_contig738:10571..114581622932237.8951902-UTR-F-serratus_M_contig738:10571..11458Fucus serratus maleUTRF-serratus_M_contig738 10572..11458 +
1690964212.754543-UTR-F-serratus_M_contig738:10571..114581690964212.754543-UTR-F-serratus_M_contig738:10571..11458Fucus serratus maleUTRF-serratus_M_contig738 10572..11458 +
1622932237.9245572-UTR-F-serratus_M_contig738:11898..122421622932237.9245572-UTR-F-serratus_M_contig738:11898..12242Fucus serratus maleUTRF-serratus_M_contig738 11899..12242 +
1690964212.7649114-UTR-F-serratus_M_contig738:11898..122421690964212.7649114-UTR-F-serratus_M_contig738:11898..12242Fucus serratus maleUTRF-serratus_M_contig738 11899..12242 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932237.7583225-CDS-F-serratus_M_contig738:1217..12951622932237.7583225-CDS-F-serratus_M_contig738:1217..1295Fucus serratus maleCDSF-serratus_M_contig738 1218..1295 +
1690964212.6791332-CDS-F-serratus_M_contig738:1217..12951690964212.6791332-CDS-F-serratus_M_contig738:1217..1295Fucus serratus maleCDSF-serratus_M_contig738 1218..1295 +
1622932237.7777045-CDS-F-serratus_M_contig738:8086..82481622932237.7777045-CDS-F-serratus_M_contig738:8086..8248Fucus serratus maleCDSF-serratus_M_contig738 8087..8248 +
1690964212.6897175-CDS-F-serratus_M_contig738:8086..82481690964212.6897175-CDS-F-serratus_M_contig738:8086..8248Fucus serratus maleCDSF-serratus_M_contig738 8087..8248 +
1622932237.7999618-CDS-F-serratus_M_contig738:8747..91631622932237.7999618-CDS-F-serratus_M_contig738:8747..9163Fucus serratus maleCDSF-serratus_M_contig738 8748..9163 +
1690964212.7024946-CDS-F-serratus_M_contig738:8747..91631690964212.7024946-CDS-F-serratus_M_contig738:8747..9163Fucus serratus maleCDSF-serratus_M_contig738 8748..9163 +
1622932237.8237524-CDS-F-serratus_M_contig738:9538..97511622932237.8237524-CDS-F-serratus_M_contig738:9538..9751Fucus serratus maleCDSF-serratus_M_contig738 9539..9751 +
1690964212.7163184-CDS-F-serratus_M_contig738:9538..97511690964212.7163184-CDS-F-serratus_M_contig738:9538..9751Fucus serratus maleCDSF-serratus_M_contig738 9539..9751 +
1622932237.8464043-CDS-F-serratus_M_contig738:9996..102251622932237.8464043-CDS-F-serratus_M_contig738:9996..10225Fucus serratus maleCDSF-serratus_M_contig738 9997..10225 +
1690964212.7277207-CDS-F-serratus_M_contig738:9996..102251690964212.7277207-CDS-F-serratus_M_contig738:9996..10225Fucus serratus maleCDSF-serratus_M_contig738 9997..10225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig738.18628.1

>prot_F-serratus_M_contig738.18628.1 ID=prot_F-serratus_M_contig738.18628.1|Name=mRNA_F-serratus_M_contig738.18628.1|organism=Fucus serratus male|type=polypeptide|length=366bp
MRESSLGKASAVREEDAGEEGFQEDPLPLGRSVLRSALDCRKRLGLTLSR
LGPVVLRRTQYFAWSIWINETRREIEQQRWYSGSEAGSTEKLVKPVLLDL
PTIVAPGLVKNQGANMEEPFRAVGLASVWGPRQTGSSSWRENEFTWPDVF
WKAVVLAPARSRGHVGGWLAAKLGGGDQGLQTAWPAIKGGDSMAMVLEAD
REVSCGRSATSKLIHRSVRKVPTGVLTGCSEASVNPQRMHVCVNRISMEE
GSRLGPSLELSRALEATSLVVFAATPGTRIASFGRLSTLSRTGRKRGKTS
DALSGVPTRSGGGSFAGGVICSGFSPEQREEKEARRRHFEELVVQDAWEG
LGLQEVAQLGGLVSA*
back to top

mRNA from alignment at F-serratus_M_contig738:483..12242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig738.18628.1 ID=mRNA_F-serratus_M_contig738.18628.1|Name=mRNA_F-serratus_M_contig738.18628.1|organism=Fucus serratus male|type=mRNA|length=11760bp|location=Sequence derived from alignment at F-serratus_M_contig738:483..12242+ (Fucus serratus male)
GTGGCCCAGAAGTGCACGTCGTGCGGTCTTCAGGGAGCTGTGATCGGGTG
TCACGCATCTTCTTGCCACGTTAACACGCACTACGCGTGCGCCGTGAAGG
AGGGGTGGGAGTTTGGAGAGCCGAACGTGAATGGCAAGGTGTGCGTTCAG
GGCGGGGGTTGGATCGTGATTGGTGTTGGCGAGTTGCTTACGTCGAGTGT
TTTGTGTGTGTATTTATCCCTAGTAGATGAGGACATAACCGCGCAATCCG
ACCCTGTCGTGCTAGTCGTTATATGCTATTTATACTCGCATTGGTCCTCC
CAAGGGGGGATTAATAATAATAATAATGCTTGTTATCCGCGCGCGCGCAT
GTGTGTGTGTGTTTCAGTAGAATTGTTTATTCCGTGATCCGATGGTACAA
AGGCAGGTGAAGAAAAGTGCCCCCTCGAGCATCAAGCGTCGTGTGCCGAG
CTCTGTTTGTCTATTATTATCTACCCTTAGCGGTCTCTCGAGGCACAGTT
CTTCAGAGCGTATGCTTTCCGAACATCAGCGCCTGTAAGTCGTGGCAGTC
GTGTCGTCTACTGTGCCTCCAACAGAGTGTCTCGCACTCGTAGGGGTTGC
AACCCACGCCATAGACGCCCCCCCGTTTCCCTTGTGAAACATGCCTCGCT
CGGTCCCCTCGACGGAGCCGTCCTCAACTCTTCGTCTACTAAATATACTG
TTTCGTGTGATATATCCGCCTTTGCAGATTTTTCTATGCGTGAATCATCG
CTTGGAAAGGCAAGTGCGGTTCGAGAAGAAGACGCCGGCGAAGAAGGCTT
CCAAGAAGACCCCGTGAGTTGCTTTACTATGCGTTCTTTCGCATCCCGGA
GCCGTCGTTGTGTCTTAGTCCTTATCGATAGCCGTCTCTCTCTCTTTCTC
GGAGAGCCGGTTAGGTCACTCGGTCTTTTATCGTGAAGCGCTCGTGCTAC
AGTAGTATCGATGATGATTGGTACTGTACTGTACTTATCACTACGCACTA
TACAGTATAATAGTATAGTATAATACAAAATATTTTTATTTGTTGCTAAC
CTTCGTTGATATTGTTGTATCGTTGGAAGTTTGCTACTGCTGTAGAGTGC
AAGCGTATAGTGTACCCTTGCCTGTGTACAAGTGACACTTAAGATCAGGA
AGATCTTGTTTTATCACAGTGCACTGGTTTTTAAAGAAAAATGTGAATGC
ACCTAGACCTTCTGATGTACTCCCTTCATTTTTCATACCTGTGTTTGGAA
TTTTTTCGTATTCAGTAATAATATTTATTTATTTCAGAATATTTTAGACA
TTTTTTCTTTTTCGTCTCCTCCACCACGGTATTACTATTTATACGACACT
AAGTAGTACCTGATGACATAATCTACATGCTGTGGTTGATCGCAACCACG
GGTGCGATTTTTTTATTACATGGTACAGTAGCATACACTACGCATACAGA
GTAGTTCCAACTTTTGGTTGGCTGTTGTAAGATATGGAGCTATAATAGCT
ACGGGCAGGGTCTAATATTATTATAGTCTAGTCTAGACTATATTAATGCA
TGTAGTCTATACTTATATGTATAATATTTCGAAGTATACATACGGTACGG
TAGAGCTAAAGTGTACTGATTTACACCTTGACAGTATACATACGGTACGG
TAGAGCTAAAGTGTACTGATTTACATCTTGAGGCCATCTTTACACGTATC
GTATTTGGATCTGGAATATTATTGTATTTGGTGCTTATCGTATTTCGAAT
ATTTGCAGAGCTCAAATCCAACAGGTCTATTTACACGTACATGGAGGTTT
GCAACGATTTGAACGGCGTGTGTGCATTTTTCTGGCCGTCTGCTTTCAAA
ATACATAAATGCATCGCACGCGCCTCGCCAACAGGTAGCAGCACGGCAAC
TTGAGAGTGGACCATTATACAATAGAGGGACCATCGCCATCGTGGCCGAG
TCTCTGTTTTTCGCGAAGGACGAGAGGTTACAACAGCACAACACTCGTCC
TTCAGGTTTAAATCAAATACACGTGTTGTACTGGACTGTCTGCACAGGCC
AGTATAGTCTTATCTGTATTACAGCATAGTACAGTCTACTGTATTACAGT
ATAGTACAGTAGTCTACTGTATGTAGTACAGTACGGTCTTCTGTCTGTAC
TGAAGTCATCTCGAACCCAAAGATACACATCGCATTTTCAGCAGAAATGG
CAACAACTTTCACTGTCCTTCAGCACTACAGGTAGACACTGCCTCCATGA
CACGTCCCTCGGACTCGCCGAGTACGCTTGACTCGGGAACCATCACCATC
CTCGCTCTATTTTCCCTACGCCGTCTCCATGTCCTCTAGCCCGTCCAAAA
TCAGAGCCTACACGGCCAAGGTCCTGGCTCGTCGCCGTTTCTCGTAGGTT
AAGAACACAACCAAAGCTACAGCGAGCGCTCCCCAGAGGCGTTCATCGCG
GTCGTCCGACGCGATGAGAGCAACCGACGCGTTGTGTAGATGCTCAAAGT
GCTGTGTGCCGAGGACAGACCTCTCTGCCTCGATGGGAGCTCAACGTGTG
CTGGGTTTACAGCTATGCTAGATGGTAACTTCGTACTTTCAAATGCACAC
GCCTACACGTCAAGTCGAATCCCGCAAATACAATCGTCCTCGGCTCCATC
GTATTTGGGTCCCAAATACGATGGAGCCGAGGGAAAAAACGAACATCGTA
TTTGAGATTATCGTATTTGGCCAAATACGATGCGTGTAAATAGGCATATT
GGATTTGAGGTCCCCAAATTCCCAGATCCAATTCCTATATTCCCCAAATA
CGATACGTGTAAAGATGGCCTGACGTGTGGTCTAATAATACATGTATAAT
AGTTAAAAGTATACATACGGTACGGTAGAGCTAAAGTGTACCTGGTACTG
ATTTACACCTTGACGTGTAGTCTATTGATGCATGTATATTAGTACGAAGT
ATACATACGGTACGGTAGAGCTAAAGTGTACTGATTTACACCTTGACGTG
TGGTCTATTAATACATGTATAACAGTACGAAGTATACATACGATACGGTA
GAGCTAAAGTGTACTGATTTACACCTTGACGTGTGGTCTATTAATACATG
TATAATAGTACGAAGTATACATACGGTACGGTAGAGCTAAAGTGTACCTG
GTACTGATTATTATTAATCACGCACCGAATAGATGGCACGGTAAAATGTC
CCTATAGACTATGACTATTAATAGCTCTAAAACGAAAATGTACCAATCTC
TACTAATTATACTATCATAACGTTCCTTGTGTTATAAACtTTTTTTAAAC
AAAACTCAGAACGCGCCTATACCTTCTGAGTATCCCCCATTTTGTTATTA
TTGGACTAAAAGTCTCTTTTGTTGTATGGTTTGATGACCACTATTAATAA
TTATTATCGTATATTATTACTATCCTTTTTAATTATCTCTTTGTTTTGTT
TGGTGTCCCTGCGTAGCGAATAATGTACCAGTAAGTGTACAGTATAACGA
CGGGCTTCTTCCCGACGTATTATACTGTTGACCCAATGTTATTACCATCG
AGGAACCCGTTTAAACGCCATGAAGAGATTTTGTCTTCGCAGCCTATATG
ATCCCATCTAAAACGTTTTGGCATTTTTTCCCCCTGACTGGGTATAGTAT
AGTATAGTATAGTATAGTATAGTATAGTATGACATCTCAGAAGGTCTAGA
TGCGTTCATGTTTTTCTTTAAACACATATGGAGGAACTTTCTTTACTAGG
CTAGGGTAGGTATGTCATCACGTTTCGGAGGAGGTTTCTTGTGTGTGTAT
CCAGCCATGAATGGGTTAGCCTCTTTGCACGGCTCATTATTGGGTCTCGT
ACGGGTAGAACGAAGTAGGGGAGCCGGGTTTGTAGCCAAAGGCAACCGAA
AACATATATATACTGCTGTATAGTCTATTTATTTATTTTAAAGAAAAACT
AGAACGCGCCTATACCTTCTGAGCATCCCCCAGTCGTGGGGGGAAAAATG
TCAAAATGTTTAGGTGGGAACATAGGCTGCAAATACAAAAAAACCTCTTC
ATGGTATTTAAACGGATTCCCTGATGGTAGTAACATTGGGTCAACAGTAT
AATATCGGGGAGAAGCCCACCGTTATACTGTGTATGTGTATGTGTatgAT
GTGTGTTTTCTTCCCATCCATTCTGGACATCATCAATGGACGTACCAGCC
GGGGTCACACAAATGGAAGGTCACACAGGATTTCTCATCCACCTTCCTTC
TGCGGTGCGTGCCTTAATTTTTATCGCGAGATGGATTCAGCCATTCCTTT
CCCTCGTCGACCGTGAAGTCGAATTTTGTGTACTAACGAATTAATCGTTC
TCCACCCATTGGGCATTTATTTTTTATTTTCTCAATCTGTAGACCTCACG
TCCCAACGTGTCAGTGTTGTTGTTTTTGTGTTTTCTTCCCATCCATTCTG
GACATCAATGGACATACCAGCCGGGGTCACACAGGAGGAAGGTCACACAG
GATTTCCCATCCACCTTCCTTTTGCGGTGCGTGCCTTAATTTTTATCGCG
AGAAGGATTCAGCCGTTTCTTTCCCTCGTCGACCGTGAAGTCGAATTTTG
TGTACTAACGAATTAATCCCCGTTGGGCATTTTTATTTTGGTTTTTAGTT
TTTAGCGAGAAAAATCCTGTTTGCCGGAATCGAACGCACGTCCCAACGTG
TCAGAAGGTTACGAGGTACCTACTGAGCTACCGGGGCGACCGGCATACGT
ACATAATTAGATAGATAGGTTGTTGTACATAATATATCAGGGTACAGAGT
ACAATACAGTACCTTAATAATAATAGTACACGATAATAAATGTCATCGAA
CGATACCACAATACATTGTGGGACTTTATAGACTACTATGTTATCAACAT
GTTTTCAGTACGTGTTTGTATTTCACCCTCGTGTTAGATTTGTAACAACC
AGATGATTTTTAGATGTATATAACAGTTATCAGCAGTGGTACATACGATT
TGGTTTAAGGATTGACAAGAGGACAGGACCATGATGTAGATATCTTCAAA
ATCCAGAAAGTGCAAGACCCCGTTATTCACCTGAAAGTAGACGAAGAGCA
GTGGAAGACCACACAAGGAAGTAAGAGGCAAGCCCAGTGGGTATGGTCCT
CACGTGCGATGTCAGGTCTACGGCTCCCAGATACTCCGCATACACAAAAA
ACAAACTACGGTCCACTGTACTATAGGCTCCGCCGCAAAATATTCGGGGT
TTACGAAGAAGGCTGAAATCTACGCGAGATATTGTCTTTGCAGCCTATGA
TCCCACCTAACTAAGCGTTTTGGTATTTCCCTCTGCTGTTGTGTGGGATG
CTCAGAAGGTCTAGAGATGCGTTCAGTTTTTTTTTAAACAAGGAGCGGCA
GACTTTCACGGAATTATCCATGACCTGTGTCAAAGTGCTATTTTTTTCTA
GGCTTCGAATGGACGCCTTCATCTTCTTCTGATTCCGGGCCAAAGATGGA
CGCTGGGGTTGTTTCCGCCAGGTCTTCCAAATCTCGATCTATAACTATTG
TTAGGTAGTGGGGACATCACCTGACCGCAAAATCTACTCATATGTCCCTA
GATATATAATATGGTGTTTTCCAACAAGTCAAGTTGGTGTGAGCTACAGC
TCCACGGCACTTTTTTTTTTTTTTTTTTAATCACACTTATAGCCGATGGA
CCTCTAATTACCATCCTGCCTGTTGTCACAAAGGATCCTCCCATCTCTCC
CCGGTTCATGCCTTGCAATTTTTATCGCGATGCAAGTTCAGCACTCTTAC
AACTCGTCAACCAAATGGTTGAATTTTACTTACTCACGTTCCCACACTTT
CCGTTACGAAAGAAAGAACACAAATTCCGCTTAAGCTAAGAATCGAACTC
ACGACTTCCGCACTAGCAGGTATGCAGGTTACCTACTAGTCCACTCGGGC
GACCAATGGCCTTGTAATCGCGATGAAATTGAGGTGCATCTTAATCAGTG
GTCCTCGTAGTCCCCGGGCTACCTAGAAGCAAAAATAAAATGTTCTTGTT
GCTGTACTGAAGAGCTTTATAAAGAAAATCTAAATGCGTTTACATACATA
CATACGTGAACCTTGTGAGCATCCACCCAGCCAGCCAGAGGCGAGAAAAA
TCTGAACGCGTCTGAAGAAAAAGTACTTGTTGACGGTTTCGCACTACAAA
CTTGCGAGGCGGTCTTTCTTTCTCCTCGATTCTCAATTCCCGTAAAACAA
TCAGTCACCGTTCACGTGCTGGCGACTACATACGCTGTAACCACAGAGTC
CCCCGGGAGCATCTCTGCCAATGTTCCCGCGTAAGGGGCCCACCGCGCCC
GTAGCATACCACATGATCCACTATTTATTTTCTTGGCATCACCTGATCGA
TGACACTAGTGGGAACAATCTTCCCAACCTTGAGCAGCCTCAACGCAAAC
ATCTCCGCCTCCCACACCTGTCGCGCCGTCTTTGGCCTAGGTTTGACGTT
GGTCGCCGGACGGGCTTTTGTCGCCAAGGGTTCGATCGAGACAGGCGCGC
TGCCTCCCTCCGAGGCTTGGGTCGAGACAGACACCCTGTCTACCACCGAT
TCTTCGCTCGAGACGGACGCGCTGTCTTTCGCCGATTCCTCAAACCTCGC
TGGGGGCGTCCGCACCGTTGTCACGTCCACCGCGGCCGGTCCATCGTTGG
TCATGACGAACGGGCTTGGCGCTAGATCCAAGGCCATTGGTGACGGACGA
GACAATACGCATGCGACAGTGTTCTGCGCTCCACGCTCCCAGTTCGTCAT
GAGCAACGATGGACCGGCCGCAGTGGACGTGGCAACGGTACGGACGCCCC
CAGCGAGGTTTGAGGAATCGGCGGAAGACAGCGCGTCTGTCTTGAGCGAA
GAATCGGTGGTAGACAGGGTGTCTGTCTCGACCCAAGCCTCGGAGGGAGG
CAGCGCACCTGTCTCGACCCAAGCCTCGGAGGGAGACAGCGCGCCTGTCT
CGATCGAACCCTTGGTGGGACCAGCCCGTCCGGCGACCAACGTCAAAGCT
AGGCCAAAGTCGGCGCGACAGGTGTGGGAGGCGGAAATGTTTGCTGCTCA
AGGCTGGGAAGATTGTTCCCACTAGTGTCATCGATCAGGTGATGCCAAGA
AAATAAATAGTGGATCATGTGATATGCTGCGGGCGCGGTGGGCCCCTTCC
CTTACGCGGGAACATTGGCCCTCGTAAAACAAGGACAAGATTCAAGCCCA
TAGCGGCGTGAGCAAAGAGAACCCTACGAATGTGGCGTCGTTGGATGTAG
GTCACGCGAGATCTAGCTCTGGTCGATGGTACCATACGCCATTAGAGGTT
AGAATGGGTGGATCCCTACACATGCCGTGTCGTTGGATGTAGGTCACGCG
AGTCCTAGCTCTGGTTGATGGTACCATACGCCATTAAAGGTTAGACTTTC
ACGATGCCTTTAGTTTAGTCTAGATGGAATATATTTTGTTTCCATGAGGT
GCAGTATAGAACGAAGTCGAGCACGCGATAATTTTTGCACTTGTCGAGCG
GCAGGCAGATATATCGATATTTTTGCCCCCGTTTCTATGTGGCCGTACAC
CCAGCTTCCTCTGGGCAGATCCGTTCTACGCTCAGCATTGGATTGTCGTA
AAAGACTGGGATTGACACTGTCGCGGCTGGGACCTGTCGTGCTCCGCCGT
ACGCAATACTTTGCATGGAGTATCTGGATAAACGAAACGAGGCGTGAGAT
CGAACAGCAACGTTGGGTGAGGACTTGAATCATCCGTGGTTGAGCGTTGC
CTGCGGAGGAGTGGTATTCATTGCTTCTGCCCTATTTTACGTCAATCAAC
ACATCACCACTCGCTTTTCCCTCGGTTGACCATGGACACGCCATCGGTGG
GCACGCCCCCGCAATTGCTACGGGAAGATCGCGGAAAACGGTCACCCTCT
GGCTTGTTTGTGTGCCACACATGCCTGAAAAGAACCTGATAGACCATCTT
CAGAATCGTGCGAGCGCCCCTTCTTTTGTTATGCCCCCGTTCGTGTTATG
CTAAATATGCTTAAGAAACGTGGAACGCCGTCAAGATTACAGGCGGGAAT
TACATCTGTACCTGTCCCGGCAGCAGCTCAGTGCAGTAGCCCAGCGTTAT
CGATCGTTCGCGTCGGCAGTACCATTATTATAGCTTAGAGCGGCAGTATC
ATTTGTTGACTGTTTTGTTAAAGTTACAGCCATCTTCCCTGGCTGCCTCT
GTTTCTCACAATCAGTATAGCGGCAGTGAAGCGGGCAGCACCGAGAAGCT
TGTTAAGCCTGTACTTCTGGATCTGCCAACCATCGTGGCTCCGGGGCTCG
TCAAAAACCAGGGGGCCAACATGGAGGAACCCTTCCGGGCCGTCGGACTG
GCATCAGTTTGGGGACCCCGTCAAACGGGAAGCTCGAGCTGGAGGGAAAA
TGAGTTTACTTGGCCTGACGTCTTCTGGAAGGCTGTTGTGCTAGCCCCCG
CGCGCTCAAGGGGTCACGTGGGCGGTTGGCTGGCGGCCAAGCTTGGGGGG
GGTGACCAAGGGCTCCAGACAGCATGGCCGGCCATCAAGGGAGGAGACTC
GATGGCAATGGTTTTGGAGGCTGACCGTGAAGTTTCTTGCGGGAGATCGG
CCACCTCAAAACTTATCCATCGTTCGGTCAGGTGAGTTTGAATTTTGGGG
AACCAGAAGGGTTCAGTGCTGTTCCCGTGTGTTCCTGCAGGTGCAGATGC
GACAGAGAAGGAGCGAGTCGAGGATAAAGTTAACGAGGCGTTTGGTTCCG
TTCTTGTGTTTCGCCCGCCCTGCAGTGTGGCACGAAACTGATGACGTGAG
TGTGCGAAGCTGTTGCGTGAGAAATCCTCAAGAAGAAGGAGCCATACAAT
AGCCACCCGTTTGTGTTCCACGGTCGAGCGTTTTCTGATCGTACGCGGCA
CGAATGAAACAAGGGGCATATTAGCAGCCGGTCCGTATCGTGTGTTCATC
CCGTACAGCCTCCGACCTGAGCTCGTGTGCGGCGCGCGTTTTGTGCAAAC
AAGCAGGAAGGTACCGACGGGCGTGCTAACTGGGTGTAGCGAAGCCTCCG
TAAATCCCCAACGGATGCATGTGTGCGTGAACCGCATCAGCATGGAGGAA
GGGAGTCGGCTTGGGCCATCGCTCGAGCTTTCGCGAGCTCTCGAGGCGAC
GAGCTTGGTGGTTTTTGCAGCCACCCCAGGGACCAGGATCGCTTCTTTTG
GTCGCCTCTCCACCCTAAGGTCAACGTGAAGCCGGCATTGCGCGGCGAGA
TGGAACGTTTAGGCGATTCGTTCACGTTCCGTCCAATATCACTTTTTTGG
GGTTTCAGTACTTGTATTTGTATTTGTATGCGTCAACGTTTCACGTCGAA
AAGAGGCTATCATGAGTGTCGTGCGTGATGTACTATAATAGTAATACTGT
CTCACTTTCTTTTTTGTCGGCGTGTTTGCTTTTCCCTGGTTTGCATCCAT
GGGTCCATCGGCAGCCGGACTGGTCGAAAGCGAGGGAAGACCTCGGATGC
GCTCTCCGGTGTACCGACTCGGAGTGGGGGCGGTTCCTTTGCTGGTGGTG
TTATCTGTTCAGGATTCAGTCCGGAGCAGAGGGAAGAAAAGGAGGCTAGG
CGACGCCACTTTGAGGAACTCGTCGTACAGGATGCTTGGGAGGGGCTTGG
CCTACAAGAAGTGGCCCAGCTAGGGGGGTTAGTGTCCGCGTAACGGTGGT
CGGACTCCACGAGTTCGAGAGCAAATCGAAGGAAGCTGCGGCTTCTTTAG
AGGGTCTCGTGTTCAGTGGAGAGGCTGAGGAGGATTCATCCGATGACCTG
GCGAGCAACGTGGCGGAACTCTCAGGTGCGTGGCCCTCTCCGTTGATGAG
TTTAAAATAACCCCGTGGCAGCATGTTGCTTACGAAAACCCGAAATTTTC
GGAAAGATGCAGCGCGAGAACCATTTGTCGGCCTGCCGATGGCTGTACTG
TAGAGTGACTGACGTTTTACTGACTCCCAAGTTAAATGAAACGAATAAGA
AACAACTCGGTGGCATTCTCTGCATTTACACTACTCCAGGACAAGCGCCG
AAGCAGCCTCTGGTGGCAACGCGGTCCCTCCAGGAGATGTTCAAGACGGC
GATTTCCCGAGCCACAACGGACGGTCGATACGCTAGTGCCGCGGGCCTCA
TTCTGCCTGCGTCCCGCTTCGAAGATCCTCCGTTGGAGGCCGTCGTACGG
GCGGCAGCCCGCGCAACGGCGCACGTATGTCGTCTCCTTGAACGCAAGGC
TGATGCGTGGCCTATGCGGGAATTTGCCGTTGTGATCAGCTCTGTGGGCC
AGCCCGGCCATGTTGACAGAGAACATCGCATGGAGGTCGCTTTCGTTCCA
GGTGCGGCACGGCCTGTGGTGGGAGAACTTCTGAGATCTCCCATCCTGGA
GTCGGAGGGCTTTGGTGTCTGGAAAAATACAGCGACAAATATGTGTTTGA
GGGTGGGAACCTCTGGTGGTCATTGGTCTTTGTGGCGATTCTTGGGGTTG
GAACCTTCCCACGCTGCACCATCGCCCTCCTTCTTCGCTGTGATGGAAGC
CGCTCATTTGCCTCCAGTACCGATGGAGATCGCCGAGACATTCAGTCCAG
AGGCACTGTTCGGGCAAAGAAACAGGCGTCCCTTAGGGGCTATGGGTGCC
TGGGACCGAGTGGAGCAGTTGGAGGGCTACCTAGGTCGAGGTGTGCTGCC
GAACGATCTCCGTAATCGGTTGGCAGAGGCTTTGGCCGGTGGCACGATGA
TGAGGGGTTCTCCGCCGCCGTGGAGAACGCTCGTGGGAGATGCACTGGAG
AAGAGGATTGAGTCGGCTGTTGGGCCTCCCGTGGCGGCCCACTTCGTCGT
TGCTTCTGGCCAGGACCGTCTGGCGCAAAGGGACGATATCGTTCCAGGAT
TGCTGAAAGCCGAGGACTTCCGAGTTGTGAGTTGTGAAACTGACACTCCG
TACAAGTCTTTGTTCTCGGCTGCGAACACAGTGTTGAGGTCCGAGGCTTA
CTTTTTATTCCGGTCGCGGGACTCCGAGCTTTGAGCGGGCGTGCTGATGG
TTATTTGTACTATTATATTAATATTAACTGTAGCTTGGAGCGCCCCCTTC
CTGGAAACACAAGATTTCAATCATATAGTAGACGTTCTGGTGCAATGTCC
CACCAGGAATATCCTCATTTAGGCCCTGCAAAACCATGTGTTCCTTCTCA
ATTTCCTACTAAAGTGAGTGCACTTTGCCGCGTTCACGTCCTAACCAGAT
GCGCCACAGTCTAAGAAACTCCAACTCCATCAATATTACTATTATCACTA
ATTAGAACTGGTGGCGCCGGCGTTCCCACTCAACTGCTCGACCTTCCTAT
CTCCTTTACTTTGCAGCCGCCGTCAGTTTCCCCGTCGCCAGCGTTGCCCA
AGCGCGTCACGCCGATCAGCGAAAAGCAAAGGCTAACACGGTCTCTTCAC
CGCTCTGTACTTTTCGGCGACGAGGAACCCGCAGACGACCTGTCTGTACC
ATTCTAACGCAGATCTGGCGATTGTATTCATCGTTCACGTGTCTGTTATT
AAGGCGTTCGGCCCTGATTTTCAGAATGGTGTATGATAGGTGAAATGTAA
GACAGGCGTATAATATAATAGCCCACGATATCGATACTGTCTGATGGGTC
TGATGGTTGCTGCTCCCAAGAGTGCTGATGGGAATCGATAAAGAACATAC
CTGATACTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig738:483..12242+

>mRNA_F-serratus_M_contig738.18628.1 ID=mRNA_F-serratus_M_contig738.18628.1|Name=mRNA_F-serratus_M_contig738.18628.1|organism=Fucus serratus male|type=CDS|length=2196bp|location=Sequence derived from alignment at F-serratus_M_contig738:483..12242+ (Fucus serratus male)
ATGCGTGAATCATCGCTTGGAAAGGCAAGTGCGGTTCGAGAAGAAGACGC
CGGCGAAGAAGGCTTCCAAGAAGACCCCATGCGTGAATCATCGCTTGGAA
AGGCAAGTGCGGTTCGAGAAGAAGACGCCGGCGAAGAAGGCTTCCAAGAA
GACCCCCTTCCTCTGGGCAGATCCGTTCTACGCTCAGCATTGGATTGTCG
TAAAAGACTGGGATTGACACTGTCGCGGCTGGGACCTGTCGTGCTCCGCC
GTACGCAATACTTTGCATGGAGTATCTGGATAAACGAAACGAGGCGTGAG
ATCGAACAGCAACGTTGGCTTCCTCTGGGCAGATCCGTTCTACGCTCAGC
ATTGGATTGTCGTAAAAGACTGGGATTGACACTGTCGCGGCTGGGACCTG
TCGTGCTCCGCCGTACGCAATACTTTGCATGGAGTATCTGGATAAACGAA
ACGAGGCGTGAGATCGAACAGCAACGTTGGTATAGCGGCAGTGAAGCGGG
CAGCACCGAGAAGCTTGTTAAGCCTGTACTTCTGGATCTGCCAACCATCG
TGGCTCCGGGGCTCGTCAAAAACCAGGGGGCCAACATGGAGGAACCCTTC
CGGGCCGTCGGACTGGCATCAGTTTGGGGACCCCGTCAAACGGGAAGCTC
GAGCTGGAGGGAAAATGAGTTTACTTGGCCTGACGTCTTCTGGAAGGCTG
TTGTGCTAGCCCCCGCGCGCTCAAGGGGTCACGTGGGCGGTTGGCTGGCG
GCCAAGCTTGGGGGGGGTGACCAAGGGCTCCAGACAGCATGGCCGGCCAT
CAAGGGAGGAGACTCGATGGCAATGGTTTTGGAGGCTGACCGTGAAGTTT
CTTGCGGGAGATCGGCCACCTCAAAACTTATCCATCGTTCGGTCAGTATA
GCGGCAGTGAAGCGGGCAGCACCGAGAAGCTTGTTAAGCCTGTACTTCTG
GATCTGCCAACCATCGTGGCTCCGGGGCTCGTCAAAAACCAGGGGGCCAA
CATGGAGGAACCCTTCCGGGCCGTCGGACTGGCATCAGTTTGGGGACCCC
GTCAAACGGGAAGCTCGAGCTGGAGGGAAAATGAGTTTACTTGGCCTGAC
GTCTTCTGGAAGGCTGTTGTGCTAGCCCCCGCGCGCTCAAGGGGTCACGT
GGGCGGTTGGCTGGCGGCCAAGCTTGGGGGGGGTGACCAAGGGCTCCAGA
CAGCATGGCCGGCCATCAAGGGAGGAGACTCGATGGCAATGGTTTTGGAG
GCTGACCGTGAAGTTTCTTGCGGGAGATCGGCCACCTCAAAACTTATCCA
TCGTTCGGTCAGGAAGGTACCGACGGGCGTGCTAACTGGGTGTAGCGAAG
CCTCCGTAAATCCCCAACGGATGCATGTGTGCGTGAACCGCATCAGCATG
GAGGAAGGGAGTCGGCTTGGGCCATCGCTCGAGCTTTCGCGAGCTCTCGA
GGCGACGAGCTTGGTGGTTTTTGCAGCCACCCCAGGGACCAGGATCGCTT
CTTTTGGTCGCCTCTCCACCCTAAGGAAGGTACCGACGGGCGTGCTAACT
GGGTGTAGCGAAGCCTCCGTAAATCCCCAACGGATGCATGTGTGCGTGAA
CCGCATCAGCATGGAGGAAGGGAGTCGGCTTGGGCCATCGCTCGAGCTTT
CGCGAGCTCTCGAGGCGACGAGCTTGGTGGTTTTTGCAGCCACCCCAGGG
ACCAGGATCGCTTCTTTTGGTCGCCTCTCCACCCTAAGCCGGACTGGTCG
AAAGCGAGGGAAGACCTCGGATGCGCTCTCCGGTGTACCGACTCGGAGTG
GGGGCGGTTCCTTTGCTGGTGGTGTTATCTGTTCAGGATTCAGTCCGGAG
CAGAGGGAAGAAAAGGAGGCTAGGCGACGCCACTTTGAGGAACTCGTCGT
ACAGGATGCTTGGGAGGGGCTTGGCCTACAAGAAGTGGCCCAGCTAGGGG
GGTTAGTGTCCGCGTAACCGGACTGGTCGAAAGCGAGGGAAGACCTCGGA
TGCGCTCTCCGGTGTACCGACTCGGAGTGGGGGCGGTTCCTTTGCTGGTG
GTGTTATCTGTTCAGGATTCAGTCCGGAGCAGAGGGAAGAAAAGGAGGCT
AGGCGACGCCACTTTGAGGAACTCGTCGTACAGGATGCTTGGGAGGGGCT
TGGCCTACAAGAAGTGGCCCAGCTAGGGGGGTTAGTGTCCGCGTAA
back to top