mRNA_F-serratus_M_contig738.18640.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig738.18640.1
Unique NamemRNA_F-serratus_M_contig738.18640.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig738.18640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig738contigF-serratus_M_contig738:318337..325318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig738.18640.1prot_F-serratus_M_contig738.18640.1Fucus serratus malepolypeptideF-serratus_M_contig738 318367..325318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932237.4181266-UTR-F-serratus_M_contig738:318336..3183661622932237.4181266-UTR-F-serratus_M_contig738:318336..318366Fucus serratus maleUTRF-serratus_M_contig738 318337..318366 +
1690964212.5843346-UTR-F-serratus_M_contig738:318336..3183661690964212.5843346-UTR-F-serratus_M_contig738:318336..318366Fucus serratus maleUTRF-serratus_M_contig738 318337..318366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932237.4496446-CDS-F-serratus_M_contig738:318366..3185541622932237.4496446-CDS-F-serratus_M_contig738:318366..318554Fucus serratus maleCDSF-serratus_M_contig738 318367..318554 +
1690964212.6006858-CDS-F-serratus_M_contig738:318366..3185541690964212.6006858-CDS-F-serratus_M_contig738:318366..318554Fucus serratus maleCDSF-serratus_M_contig738 318367..318554 +
1622932237.5015264-CDS-F-serratus_M_contig738:325164..3253181622932237.5015264-CDS-F-serratus_M_contig738:325164..325318Fucus serratus maleCDSF-serratus_M_contig738 325165..325318 +
1690964212.6118839-CDS-F-serratus_M_contig738:325164..3253181690964212.6118839-CDS-F-serratus_M_contig738:325164..325318Fucus serratus maleCDSF-serratus_M_contig738 325165..325318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig738.18640.1

>prot_F-serratus_M_contig738.18640.1 ID=prot_F-serratus_M_contig738.18640.1|Name=mRNA_F-serratus_M_contig738.18640.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MAVLLYANRELTYTPCLACPAARTLRAGGEARNALLLRRRFRSAPCRSSF
CFRPDGTHGIKCRFSYVNTEDSYVYTKVRPLMPNLPLSSLLLSAYSVFPV
PLAPFLLPFSGSL*
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mRNA from alignment at F-serratus_M_contig738:318337..325318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig738.18640.1 ID=mRNA_F-serratus_M_contig738.18640.1|Name=mRNA_F-serratus_M_contig738.18640.1|organism=Fucus serratus male|type=mRNA|length=6982bp|location=Sequence derived from alignment at F-serratus_M_contig738:318337..325318+ (Fucus serratus male)
TATATATGATAGCATTACTGTACCGACCCTATGGCCGTGCTACTTTATGC
AAACCGAGAGCTGACCTATACTCCTTGTCTTGCTTGTCCCGCCGCGAGGA
CCCTTCGGGCGGGAGGAGAAGCACGCAATGCTTTACTACTACGCCGGAGG
TTTCGGTCAGCGCCTTGTCGCAGCTCCTTCTGCTTTCGGCCGGACGGGAC
TCACGGGATAAAATGCAGGTATAACGGCGCGCGGATCTCGCGACCCCCCT
ACCCCGAATCGCTCGACATTACGACCCCCTGCGACCTAGATTTTCGCGCC
CCGGCGTTTGCGTTCCCTCCAACCTTGACAAGACTTTGGTTTTCCACATC
TGATGTACATCTCTTACGATGTTTAATATATAGTACAAGCCACGCTGCAA
GTACAAGAGCGTCGACCCACCGCCCCCGCGCGGATTTTGTCGCGAAAATA
CAACACGCGTGGTGTTCTGAACGTGCAATCGGCAATTCCCTCCTACCCTG
ACAGGACTACTGGTATACAGCTGTTAACACATTCAATGCGTCACGCATCC
TCTGATTCTATCTGCACGTCGCCAACCCAAATAGTAACGTGACCATGGCC
TCACCCCCTTGAGTCTCTTGATGGCCCATTAGCGCAAACACACAAAAAAA
AAATGGCACGGAATTGTCCTGCACAGCAAAACTCAATGCTGGTGACAACT
TTTCCCCCGGGTGATGTAGCGACTCGGGATAGAACGACTCGCTTGCCGCG
GTGTGGGCAGCCTGCAAATTTACGGCCCTAAATCTCGCCCACAGTAAGGC
GGCGCTCGAAATCTCATGCTCTCCGCCGCAGTTTAGACCCTTATGACTCG
CTTGCAGCGACGTGGACCGAGCTTAAAAATTTATAGCATTGTACATCACC
TACTACTAGATGACGGTGATTTTGCTTACGTACCGCAGGCCCAGAGCTCT
CATGCCCCCTCGGACTTAAACCACTCCGGTTACTTTAATCGTCTCGCTGT
AGCGCAAACAGTTAGCGACTAGGGATAAACCCTACACTCGCTTACCGCGA
TGTGAACCGCATCTGAAAAATAAAAAAAAAATTACAGCACTAAACCTCGC
CCACAAGAAACGGTGCCAGTGCTCTCATGCCCTCTTGACTGTAACCGATC
CACTTAATCGCCCCACTGTAGCGCAACAACAGTTAGCGACTAGGGATAAA
CCCTTCGCTTGCCGCGATGTGGACCATATTTGAAAAATTACAGTACTAAT
CCTCGCCCAGAGGCGGTACCCGAGCTTCCATACTCCCTTGACTGTAACGG
ATCCACTTACTTCCATCGCCCCGCTGTAGCGCAAAAATAGTTCACGACCA
GGGAAAGACTCTACCTCGCTTACCAAAAAACCAGTTAGCGACCAGGGATA
GACTCTACGTTGCCTACCGAAAGATGGACCATCTTTCCAAATTTAAAGCG
ACCCCTTGTCCCCCCCGCGACGATGGCCATTGAACCAGTTAAAATCCGGG
CGGCTCAACAGTATCCAACGTTGATGCCGACCCTGTTTCCGGGCGACTTA
GCTACCAGAGAGAAGCCGTATGCTTCATTAGCTCCGATGTGGACTGCATT
TTCGGATTTGAACCACTTCTGTTCCGCAGGCCTCGGGCCCGATTCCTACT
CCGACCGTAACCGTTCCAGCCGCCTCTGCCGCTGGATCGCAACGTAACAC
CGCTCGCCTTGGATGACCCTCACATACAGTGTCCAATGTAGATCATGTAC
ACTCACGCAGGGACCGCCCCCTTCCGCGTCGATTATGGCCTCTGGCCCCT
CGATGCTCGCGATTACGCGATAGTCTGCACTGTGACGAATCAAGTACGTG
TCCTTGTGGACGCCCCTCTTCACAGACGACGCTCGTCGCCAGGCGTGCCC
TCAATATAGCGGTCGCTGTTGCAATTGTGGATCATCCGAACATAGCCCCC
GATGATGTCCTGCCCCCTTCACGCACGCTACAAACGTCGCCACAATCCCG
ACTTGCTCCACAGCCGAGGTCCTCCTCCGCACCTTCAAGGTAATAGTTCT
GGACTCACGCACGCTACAAACGTCGCCGCAATCCCGACTTGCCCCCACCG
CCGAGGCCCTCCTCCACATTTTCAAGGTAATAGTTCCGGACCTCCGCATG
CCCCAAACGTCGCCAAAGTCCCGACTCACCCCACTGCATCCTCGAGCGCC
CATGGTTCTGGTTTAGCCTCAACGGCTCCCACCATGCGTTATGACCCAGC
ACTCTCGGGTCACACCAACCCGAACGCTCGGCACCCAGGTACGCTCCAGG
TGCAACCTTATACTACCCCGTGACGGCCCGAAGACAGTCCCGAGTCCGTA
CCACTGTCTACGGCACCACTTCACGGATACTCCCGCCCAGTTAATTCCAA
CACACAGGTAACATATACTGGACCAACATTGCGACCGTGCCATCTCCACC
ATGCCCCCGACCCTGTCGTCTCGGCCAGGACTGACCCCCTGACCGGTACG
ATAATTCAGAGGTGTGGGGAGACACGCACACGAGGTACGGACATACGGGT
GCTCTGTCCTCCTCATGCTCGCCCCTCTCACGGACACGCTGCCCGGGTAT
GGGTTCCTCTGGGTTCAGTGCTGGCTTGGTCAGCCTGCCTGCTATCCATG
AACTCCTTCTCGATGACAGCGACGGTGATGCCGCCTCAGACGACCACCAT
CCGCGCCCACTACAGATTGGTGTGTGCCCCCAATCTCGACAAATTTCGGA
CCTTGGGACGCCGACAGCGCAGTTGACAGCCGTTGGACACACACGAGATT
GTGCCGCGACTCGACCTGCCGCGGTCATTCCGCACCATTTTCTGGACGCA
GAGAATGCCTTCCTAAACAGGGAAGAAGACCCCGCCCACTCATTATGGGC
CAGCAGCTCAGAGCCCCCAGCACCAAGACATAATACAAATGCCACAGCTG
ACTTGAGCGCTTCTTACGGTACTCCCGCGACATTGGGCCAACACGAGATT
TGCCCAGATCGCGATGATTCTGAACGGGCGCGGTCTGTCACAACCCCCCC
CGTTCCCTTCTCGCATGACCTCTGCCCCCTTTCATCCCACTTGAACACGC
ATATGTCACATATGACGCATCACTTATATACATCTGTGATGATGTCGGCC
TTTTCTGGTATCCCCCTTCGGCCTTCTCCCAATGGACGCAATCGCCGTTC
ACCGTAGACCTCGTCGAATATAATTGCGCGAAACAGTTCATGATGGCCTC
GAAAGCACGCCTACTCGGCGATGATACGGCACTCTCAGCCATCCTTGCTT
CAAACGACCCCCGAGAGCAAAAACGCCTCGGCCGTCGCTTACGTCACTTT
GACCATGAGCTATGGCAATCTCTCTGCGACACCATTGTATTACAGGGGAC
CCTAGCAAAATTCTCCCAAAACAACGAGATACGCTTCGCCCTCCTCCAAA
CCGGCGACCGCCGCCTCGCCGAAGCAAGCCCTCACGATAACCTGTGGGGC
ATCGGCCTGAGCGCCTGCGACCCGCGCGCCTCTTCCCCTGATTCCTGGTG
CGGTAGAAATCTGCTCGGTCAGGCCTTAGAGAGCGCCCGCGAAATTCTTC
GCCAAGATTTAAATATACCGCCGACGACCCCGCACCGGAAACCCCGGTTC
TACGGGATACTACCGGCGATACCGTTTCGAGGTAGACCCAATTACTCACC
TCCGCCTCGACACGACCCCACTCCCTGCCATTACCCATACGGCTGCGCTC
TCGGCTTTCACCAACTCGGTGCCCGATGACCATGCCCCCGAGGTACTTTG
GCTCAAGAACAGCGCGCCGACGCGCCCCTCCTGCCTGAACAAGGCCCTGA
TCTGATCGGTGGCATAGTCACCATGGACGACGCCACCTTCACCACCCTAT
TAACACTCCATAGTGGAGTTTCCGTGACTTCTCGATTTGACTGCCGCGCC
CTAGAACCTCTCCACATAAGTTGCAATCCAACAAAAAAAATAATAAAACC
TGTAGGAATTGCAATAATCATAGTAGCTGCGGTAGAATAAGAACGAGTAT
CAATATCTAATCCTACAGTAAACATGTGATGAGCCCCCACAATAATTCCA
AGAATGCCAATAGAAAGCATCGCGTATGTAAACACGCGGAAAAAGAGTTT
CAGAAAGCGGGTGTTGAATTAGGTAAGGCTAAATCAGATTTTAAAACGGC
TGGTATAGACGTAGTTGCGGCTCGAGCAAATAAAGCTAGTGCAGAAACTA
TTAAGGCTAGGGTTGAGTTATTGGGTAATAATTCATCTTTTAGACACAGG
GTCGCCTCAATCGTTTACCCACCAAGGAGCATTTGACCAGATGGCCGCAA
TAGGTGCCGCTGAAGCGTCCTGCATCCGATTCATAACGCCTAAAACGTGG
AGCGGTTTCGGATCACACAGCTGCTCAGCACGAATAGCCAGGCCAGAATG
ACCGTTCAATTCAACCATGACGGCACGACGTCCGCGTCCCTTGCAGTTGG
ACGCGCTTCCACTCCCGCCTCGACCAGACGGCCGGATTTTCGGTGAACTC
ACCCTTTCCCCTTGCGATGACGACTTCAGCAGCGCTGCTGCCTATATTCG
CAACGGTGAAACCCTAGACGCTGCTTATAATCTTGTCTACAACGGCCCAG
GCGTGATTCTCATCGACTCCCCTCAGATTATCCCGGTGAACTTAGTTGGC
CTCGACGGCTCCCCCGCCTTAACGGGCCATTACATGTTTGACTTATTCCC
CGTCGACGCCGACTCGGCCCCTTCGGAACGCTTCGTTTCCTCGGGTCGAC
AATTGATACCCTTGTCGGGATACCAAGATCTAGAACCGAATGACGTCTTA
GGCACCGCCTCGCCCCCGCTCAACACGCTCGATCCTCCGGACGAGCCCCC
CCCCCCCCCCGAACTTCTACACCGACTCGTTCGTCGGATAGAATTCGCGC
TGGATGCGGCTGGCTGGGATCCCGCTGCCCTCGATGCTCTCTCCATCACA
CTCGTCCCCTATGCGAGCGTCTTTTTGTCGTCCAAACTGGACTACGGCGA
ATGCTCTACACGTCATTGCGAAATTCAATCGCGTCCCTACAGACTGAACC
CCGTTCTCTCCAAACAGGTCGATGCCATCTTGGACTCCTATTTCGCCGCT
GGCCTCATCCAGCATTCCACGTCACCATGGTCGAGCCCTCTCGTATGTGT
CCCAAAGAAGGCGGGCGGCATCCGAATAACAGTCAACTATCAAAAACTGA
ATAAGGTCACCGAGATCCCGCCCGGCCTATAACTTCCGTCTCTCAGGACA
ACGCTTCGCCGACTTCCGCTCCCGCCTGCCCCTCCCTCCTATCGCCGACG
ATATCTCTGGCGCCTCCGCCCTGGCGGATCCAGACGATCTTGGCGTTTAT
CTCATCCGAGCGTGCGGTCTCACCATCCCTTCCTGTCCCGTCCCTGGCGT
GGGCTTGGGTGGGCTGGTCCCCTCGCCGGATGCCCCAGTTTTGGGTGGGC
TAGCACCCCCACCGGATACTCCGGTTTTGGGTGGGCTACCCCTGACACAG
GATGACTTCCGCACCCACCGTGCCCCGTTACCTTCTCAACCTATAACTGC
CCGGCCCTCCCGCCCCAGCGCACCTCCCGCCCATACGCCCTCTGCAACCT
ACGCCATTAACTCCCGCGACGATACCCCCGCCCATACGGACGCACACGAA
GCCAAACCGCGATCTCCGCTGGACATACCCCATCACGATCGGATTACCGC
AAGGCCGCTCACAGCGGGTTCGCCGCGCCCGCCGCTTCAGCACCTCCTCC
GTCCCGCTCGTCGCCGCCTCCGCGTTCGGATCGCCTTGGCTACACAACCA
CTCCGCATGATCGCGTCCTACAGACGCCGCCTTCCGCCGACCCCCGGTCG
ACCTCCCCAACTCCGGCGCCCTTGCACCCTACACTACCGGATCCTGACAT
CCACGCTGCGGCGGCCCACCTCTCCAACACTCTGTTGGACTACAGCCACC
AAGACTGGGAACAAGCACAACGTGAAGACCCTCGCCGGATGCCCCAGTTT
TGGGTGGGCTACCCCTGACATCAGATGACTTCCGGACACACCGTGCCCCG
ATACCGCCTCCTTCTGCGATCCTTCGCCCTCGTCGCCCTTGCGCGACCCT
TCCCCAGGCGTCATACACAATTTAATTAACCCCCGCGACGATGCTCCACG
GCCCACACGACGGACAGACCGCTATCTTGGATGGCCCCATCGCGCCCAGA
CTATCGCACGGCCGCCCACAGTGGGTTCGCCGCGTCCGCCGCTGCAGCAC
CTCCTCCGTTCCGCACGTCGCCGCCTCCGCGATCGGTCCGCCTAGGCTCC
ACGACCTCCCCGGGCCCTCCTGTCCGATAATGGACCCCAATTCTGCGCTC
TATTAGCGACCACCGTATACAAACTACTCGGGATACATAAGCTCACAACG
AGCGCCTATCACCCCAGTAGAAATAGAGGCGTAGAACGTGTCAACCACAC
TATGGCTTAAATTTTAGCCATGGTCTGTAATGAACACCAGAACGACTGGA
ACGTCCATTTCCCCCATGTCGAGTACACCTATAACGACTCTGTTAGCGCC
GCCACGGGCCTCGCCCCTAAAGACGCCCATATTAGACACCTGCCGCGCCT
CGCTTTCATCGTCTTTGATCGATCATACGGTGGCATACATCAGAACCTCG
ATCGTGACCAGTTCGCCCATTGCGACCTTACCCGCGAGCGTCAACAACGA
GCATACGAGCTTGTGCGAGAACACAACTAACCTATCCTTCTTTGCCCTCT
CGCCCCCTTCGTTCCCTCGCCTCCGCAGGTTTTCCTATGTCAACACCGAG
GACTCTTATGTCTACACCAAGGTTCGTCCTCTCATGCCTAACCTTCCCCT
GTCCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCCCGTACCCCTTGCCC
CTTTTCTACTGCCCTTTTCAGGTTCGCTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig738:318337..325318+

>mRNA_F-serratus_M_contig738.18640.1 ID=mRNA_F-serratus_M_contig738.18640.1|Name=mRNA_F-serratus_M_contig738.18640.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig738:318337..325318+ (Fucus serratus male)
ATGGCCGTGCTACTTTATGCAAACCGAGAGCTGACCTATACTCCTTGTCT
TGCTTGTCCCGCCGCGAGGACCCTTCGGGCGGGAGGAGAAGCACGCAATG
CTTTACTACTACGCCGGAGGTTTCGGTCAGCGCCTTGTCGCAGCTCCTTC
TGCTTTCGGCCGGACGGGACTCACGGGATAAAATGCAGATGGCCGTGCTA
CTTTATGCAAACCGAGAGCTGACCTATACTCCTTGTCTTGCTTGTCCCGC
CGCGAGGACCCTTCGGGCGGGAGGAGAAGCACGCAATGCTTTACTACTAC
GCCGGAGGTTTCGGTCAGCGCCTTGTCGCAGCTCCTTCTGCTTTCGGCCG
GACGGGACTCACGGGATAAAATGCAGGTTTTCCTATGTCAACACCGAGGA
CTCTTATGTCTACACCAAGGTTCGTCCTCTCATGCCTAACCTTCCCCTGT
CCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCCCGTACCCCTTGCCCCT
TTTCTACTGCCCTTTTCAGGTTCGCTATGAGTTTTCCTATGTCAACACCG
AGGACTCTTATGTCTACACCAAGGTTCGTCCTCTCATGCCTAACCTTCCC
CTGTCCTCTCTCCTCTTGTCAGCGTACTCAGTTTTTCCCGTACCCCTTGC
CCCTTTTCTACTGCCCTTTTCAGGTTCGCTATGA
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