mRNA_F-serratus_M_contig7371.18625.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7371.18625.1
Unique NamemRNA_F-serratus_M_contig7371.18625.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7371.18625.1 vs. uniprot
Match: A0A836CM66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM66_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.880e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:  113 MSIRNALCAPCDKNPQKAIAYAWFTSIVMVVVAFICACAAAGKSGG----DGSASLGFAAVW 286
            M IR+ +CAPC +NPQKAIAYAWFTSI++V +AF+CAC AA K  G     GS SL FA++W
Sbjct:    1 MGIRDNVCAPCARNPQKAIAYAWFTSIILVAIAFVCACVAASKQEGVDAVKGSKSLAFASIW 62
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BLAST of mRNA_F-serratus_M_contig7371.18625.1 vs. uniprot
Match: D7FUW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUW1_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.250e-5
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:  197 MVVVAFICACAAAGKSGGDGSASLGFAAVW 286
            MV+VAFICACA+A  S GDGSASLGFAAVW
Sbjct:    1 MVMVAFICACASAAHSDGDGSASLGFAAVW 30
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7371.18625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CM66_9STRA5.880e-1761.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FUW1_ECTSI1.250e-583.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7371contigF-serratus_M_contig7371:11857..17341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size289
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7371.18625.1prot_F-serratus_M_contig7371.18625.1Fucus serratus malepolypeptideF-serratus_M_contig7371 11920..17341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932237.1437016-UTR-F-serratus_M_contig7371:11856..119191622932237.1437016-UTR-F-serratus_M_contig7371:11856..11919Fucus serratus maleUTRF-serratus_M_contig7371 11857..11919 +
1690964212.4941058-UTR-F-serratus_M_contig7371:11856..119191690964212.4941058-UTR-F-serratus_M_contig7371:11856..11919Fucus serratus maleUTRF-serratus_M_contig7371 11857..11919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932237.1582496-CDS-F-serratus_M_contig7371:11919..119401622932237.1582496-CDS-F-serratus_M_contig7371:11919..11940Fucus serratus maleCDSF-serratus_M_contig7371 11920..11940 +
1690964212.5077553-CDS-F-serratus_M_contig7371:11919..119401690964212.5077553-CDS-F-serratus_M_contig7371:11919..11940Fucus serratus maleCDSF-serratus_M_contig7371 11920..11940 +
1622932237.175367-CDS-F-serratus_M_contig7371:17137..173411622932237.175367-CDS-F-serratus_M_contig7371:17137..17341Fucus serratus maleCDSF-serratus_M_contig7371 17138..17341 +
1690964212.5187724-CDS-F-serratus_M_contig7371:17137..173411690964212.5187724-CDS-F-serratus_M_contig7371:17137..17341Fucus serratus maleCDSF-serratus_M_contig7371 17138..17341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7371.18625.1

>prot_F-serratus_M_contig7371.18625.1 ID=prot_F-serratus_M_contig7371.18625.1|Name=mRNA_F-serratus_M_contig7371.18625.1|organism=Fucus serratus male|type=polypeptide|length=75bp
MLGQTMQSCASTVQINHEHQERVVRTVRQEPAKGNRLCVVHVHRDGCGGI
HLCLRGRRQEWWGWERVTGVRSRVD
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mRNA from alignment at F-serratus_M_contig7371:11857..17341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7371.18625.1 ID=mRNA_F-serratus_M_contig7371.18625.1|Name=mRNA_F-serratus_M_contig7371.18625.1|organism=Fucus serratus male|type=mRNA|length=5485bp|location=Sequence derived from alignment at F-serratus_M_contig7371:11857..17341+ (Fucus serratus male)
GCAAGGGCAAAGGGGGAGATAGTTTAGGGATCAAGAGAACAAGAAAGGAC
GTCGTGGATACCTATGTTGGGGCAGACGATGCAGGTACAAGTACTACAGA
CAACGGTGCTCTGTAAATACAGTATAGAGTTGATGATGTCATTCCGAAAT
GTTTCCGGTATTGTTTCCGTATGATAGTCTATATTTTTAGCACGTTTCAA
AATGTTTGAAAATTATTTTTGCTACTTGTACCGCTATCATATAGATTGTT
GTTTGAAGAAAATACAGAACGCACCTGTTGTTGTTAATCAATTCAATCAA
ATACAATCAAAACATGCAAGTGATCTTCCCACGAGCCGATTGACGCCTGA
AATTTTTATCGCGACAATCAGCACTCTTACAACTAGTCAACCAATGGTTG
AATTTTATGAACGTTCACGCTTTTTACGAAAGAAAGTCGTTTTAAGAATC
GAACTCACGACTTCCGCACTAATTAATCTACTAAACTCGAGGAAATTCAA
TCAAATCAATCAAAACATGCAAGTGCTGTACCACGAGCCGATTTTGAAAT
CTCTGTCAGACATCCACTATTTATAGACTAGTATTTATGAATCATTTTTA
TGACATTAGTCGTTTTCAATGAACTGTAAACACACTAATTAATCGAAAAC
GAGGAAAAATCAAAATAAATAGTTTTGAACTTTCCAATTTGGAAAGTTTG
GAAAATCATTTTAGTCAACATGTCAGCTAGTCGAGGTAAATGGTTGGAAA
AGGAAACCCCGCTCAAAAAAGTATGATACGCCTCGGGACATTTTGAACAC
CTTTTCCCTCTTTGAACCCTCAGCCCTCAGGACTCATGAACGCCACAGAG
ACACAGCAGTACACAAGAACGCCGCGAGTAGATGTCAATAGATCGAAGAG
CAGACCGCACTCGTTAGAAAAGTAGGATACATCAGTATTTGAGAGGAGTG
CCTGCGATTCTACTCCGCGATTGCATCCCGTAACGCGACCATCGCGATGA
TGGAGCTTTTTAAAGTAAAAACCAGAACGCACCTATACCTTCTGAGCTGT
TGTTGGGTCTACAGCGGTACCTATTTATAGTAGTCTACATCTATTTTCAA
ATTCAATTTTAAAAAATATACCTTCGTACAGATATGTTAGTAGAAAAAAT
CTCCCAACGTGCTGTATGTGATTCCGGCGCGCTACATATATCTCTTGTGC
TAGACTCATTCGCGTAGCTGTATCCCTGTCACTACTTTCAACTACCTTGA
GGCTCTGTGCCGGTGGACCAAATTCTCACAGGCACGAACGCGGGCAGGGA
AGTTATTTTTTCCCCCTGTTCAGCTGACCACGAGCGGGATTGGCAACCTT
ACCCCGTTGATCCATACTCTTGCTATATGTGTGACCATATATCCCAACTC
CTTCACCACAGCAGCAGTAATGTACATACTCAACAAAGAGAGAAGCCCGA
TCAAGTTGCCGCTGGCGATAAGGAAGCTTTATCCTGCACAGATTGAGCTG
ACCTATCGTTGTTTCCTCTTGCTGCAAATCCGGAGAGGACTGTGTACCGG
GGTTGCAACAGCACGGGCGTGTTTTTCCAAACTTTCCAACTTTCCAAATT
TGGAAATGGACAAGCACCGACCTCGAGGTGCTCGTCCAATTCCAAATTGT
GGAACGTTGGAATTTGGCAAGTTTAGAAGTTTTAGAAAATATTCCAAACT
TTCCAAACTTTTTTTTGAGATCTAAAACGCCCCTTAGATGTAATCTCGGG
GACAGGTTATTTTCCGAATTTGTCATATCGCCCCAAATATTCAACTGGTT
ATTTCAAGTCCTTGCCTCACCAATCAGCACAATGACTATGAAGAAGTAAT
CCGACGCCATAGCATTGTATCCGAATGGGCGCGTTAGACAACTTCACCTC
TAACCCTCGGCGGTAGAGTAGAAGAGTCTCGCCTCGTGATCGCAGCTTCG
CGCCATGCAGCAGCGGTCATCGCGTTAATACTCTGCTGTACTGATAGCCA
TCCTTTCAACGAACATCCTCCTCCATGACCAACAGCAACACCATGCCTGC
ACCTCTCTGCCCCCCCCTCCGAACTGATGCATCTTCAGGCGCTTTACGGC
GCAGAGTATCTTACCGCCTTTTAGACTCAAACCGCCCGGATGTTGCGCCT
CTCGAGAGGGGACGACCTGTGGTACTCTACTGCGATCGTAGTGATTATAA
GTGTTGTAACAAAAGAAGATGCATCGCTCTTGTCTGGCTCCCCCAGTGCA
GAGCACCCAGCATGGTCATTAATGGATACTTCATACGATTGTAATATTTC
ATTCGAGTCCGTTGGCCAACCAGATTACTGTCAGGTTCCGCCGCCATAAC
TACGACTTCGTTCCCATGGCTTTCCACCGAAATCTCCAGGTTAGGCCACT
CGTTCTTCTTACTTAGGGGGAAAGTTTGGTGGTCGAAAGACCTCGAAAAT
GAATTTCGCAGCCACTCCATTATTTTTATGGCGATCGAAAGGGGCCAATT
TCAATCCCACGATTTCCATTTCGATTCCGGGTACAGGATGGAAATTGGGC
CCCAGTTCCGATCGAGATTTGGGTAGAAATCGCGAAGAGGAAAAACCGAT
TTGTATTATCGCCGCCTTCTTGCCATTCTCCGCCGCTCCAGTTCTTTCCT
CCTCCTAGCCCCATGGAGTTCTTCGTCTACTTCCCATTTCGCGAGGCTTT
CACTACTTAGGGCGGGTCTTAGATAAAAAAAGCGCAGGGAACAAGGAACG
TGGAACTTCGAATCCCTCTACGATTGGCCAACGGCAAAAAATAACTTTCC
CTGGAAAGAGGTACACCTGCCGGAGTTCCATGTTTGTTGTTCCCTCCGCA
TAAATAATTTTAAGCCTCCAGTTCCTTTTTATTAGTGAAGAGCCCACATG
GAACGGGCTGGTCGAGGACAAAAGGCTCAGAAATGGTCCTCAGGCAAAAT
AAAATTTTCCATGCGCCGTGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTG
TGCTTTATTATTTACCCTATTATAAAAAACCCTCTAGATCATTTATAAAT
ATTTTCACATGGCTGAGACGATATTTTTACGTGACTAGCTAAATAGATTA
TTCTTACTGAACCCAAAGTATATGATATAGTCTGGCACTGCGCGAAGAAT
CGAGCTGGTGATATGGTCTGCAATGAAGATTCGAGAACGTTCGATGCTAT
AGGATAGAGCGGGCGATAGCTCGGAATAAACGGGGCATCTCGGGTCATCA
TAAGGGTGGTTATATGAGGGGGTTCGAGCCTGCTTCGTCATTCCTTTGAC
AGGCAGATGCTTCTCCTTCTGTGTCTCTGGTTAACGCGGAACCATAGCTG
AGTCCATGCATAAGGAGCATCTGTGTGCCGTAGTCCTGACAAGTATGGAG
CGTGGAACCTAGTTCTTTCTTACCTCCTTGTGTGATCGCCTACTGCTCTT
CGTCTACTTCCAGGTGAATACGGGTTCGTGTACTTGGAGATTCTTCAACG
TGATCCTCTGTTTTTGTCTTTTTTCAATGCTGTATTGGCTTCGTCTTTAT
TTGATGATGTTTTGTCTCGCTGTTTTTGTGGTGTCCCTGCATGGCGCTTA
ATGTAAGTGTACAGTATAACGGTGGGCTTCTCCCCGATATTATACTGTTG
ACCCAACGGTACCACCATAGGGGAACCCGTTTAAATGCCATGAAGAGGTT
TTGTATTTGCAGCCTTTGAGCCGACCTGAACGTTTTGACATTTCTTCCCC
CTGACTGGGGGATGCTCAGAAGGTCTAGGTGCGTTCTGTATTTTTCTTCA
AAAAAAAAAAAATACCTTCTGTGTCGTTGTGTCGATGTTCTCAAATCGTG
GCTCTACCAGACTTTTCACCTAAAACCATGCTCGACAGTTCAGCATTCCA
GCTTTAGTTTTTTTTTCTGGACACAGCGTATAGAACAGGGAACGAGGAAT
GTTGTTGTTTGGCAAGTAATTCGAAGTTCCACGTTCCATGTTCCCTGCGC
TTTTTTTTATCTAATACCCGCCCTTATACTAAGGTGCCGCGTTTCGAGCC
CAAAGGTCCCAGCGTGTTGCCCTCCAACGAGAGGCACCGCGACGTCGGAC
CAATCGTGGGAGACGAGCAGCATCGAGATCTCTTTAAAATGTAGTTTGCC
ATATTTGAGGCGGCAGCCTTTGTCAGGAGGCGAGACATCCGCCGCCGAGC
GAGGATCGCGATGGGAGGGGGGGGAGCGGTGGTAACCGCGTTTGTATCTA
TCTTACTTTCGGCGGATGGACCTCAACGTGCTACTGACAGGTTATCAATC
CCACCTACTATTATACTGCACGTCGCCATCCTGGCTACTGAGGTCACAAA
AAGGATCTTCCCATCTCTCACCGGCTCTCGCCTACGATTTCTTCTATCGC
GTTGCAAGTTCAGCGCTCTTCAACACCTCGTCAACCAATCATAATCAATG
ACGGTTCAAATTACTtacctggTACAGCGTTCCCGTTCTCACGCTTTCCG
CTACGGAAACCAGAAGAAGGGAAACCATCCTGTCGAGAATCGAACTCACA
AATCCGCACCAATAGTATAATAGTATATAGTGAAATGGTTGAGATGTAGT
GACAAATTAAATGTAGACGGCTGCATAATTCCGGGCTTATTTACGATTGG
CCTTATAGATTGTTTTTGTTTTTTATTTGTTTTGTTTTGTTTTGTACATC
ACTTATGGCGTATGGCGGTTTCATAAATGGACGCCGCCGCGGAACTCGGG
AGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCA
GGCTGACGCGGGACGGGACTGCCGAAACCGTCACGCGAGATCAAATTCTC
AGGCACGAACGTAGACAGGGGAATATTATTTTCCCTGTTCAGCTGACCAC
GAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTTGCTATATGTG
TGACCATACATCGATCTGCAGACACAATCCCCCTCGTCCCGTCCTCGAAA
GAATCTTGGTCTCCAGAAGGCTCGtTTTTTTTCCATGGAACCAATCAATA
ACTCTGTGGTAAAAGGGTTGGGTACCCGTGCGGTCCAAAGTCCGCTGGTA
ATGCAAAGCTTCGCAGCGCACATGATGCAAAACCCCGCAACGCCATTAAT
TATTTCTGACCGTGTTCTCTTCCCCGTTTTTTTTCGCACTACACTCTTGA
TTCTTGATACCGCTCTCTTTTGACCCGCGCGGCCTCCGCTCCCTGCCCCT
CCCCTCCCTCCCTTTCCCGCCCCCCAACAAGTCGTGCGCATCGACGGTGC
AAATCAATCATGAGCATCAGGAACGCGTTGTGCGCACCGTGCGACAAGAA
CCCGCAAAAGGCAATCGCCTATGCGTGGTTCACGTCCATCGTGATGGTTG
TGGTGGCATTCATCTGTGCTTGCGCGGCCGCCGGCAAGAGTGGTGGGGAT
GGGAGCGCGTCACTGGGGTTCGCAGCCGTGTGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7371:11857..17341+

>mRNA_F-serratus_M_contig7371.18625.1 ID=mRNA_F-serratus_M_contig7371.18625.1|Name=mRNA_F-serratus_M_contig7371.18625.1|organism=Fucus serratus male|type=CDS|length=450bp|location=Sequence derived from alignment at F-serratus_M_contig7371:11857..17341+ (Fucus serratus male)
ATGTTGGGGCAGACGATGCAGATGTTGGGGCAGACGATGCAGTCGTGCGC
ATCGACGGTGCAAATCAATCATGAGCATCAGGAACGCGTTGTGCGCACCG
TGCGACAAGAACCCGCAAAAGGCAATCGCCTATGCGTGGTTCACGTCCAT
CGTGATGGTTGTGGTGGCATTCATCTGTGCTTGCGCGGCCGCCGGCAAGA
GTGGTGGGGATGGGAGCGCGTCACTGGGGTTCGCAGCCGTGTGGACTCGT
GCGCATCGACGGTGCAAATCAATCATGAGCATCAGGAACGCGTTGTGCGC
ACCGTGCGACAAGAACCCGCAAAAGGCAATCGCCTATGCGTGGTTCACGT
CCATCGTGATGGTTGTGGTGGCATTCATCTGTGCTTGCGCGGCCGCCGGC
AAGAGTGGTGGGGATGGGAGCGCGTCACTGGGGTTCGCAGCCGTGTGGAC
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