mRNA_F-serratus_M_contig737.18622.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: D8LIY3_ECTSI (Peroxisomal membrane protein PEX14 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY3_ECTSI) HSP 1 Score: 112 bits (279), Expect = 1.070e-28 Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 4 KYLRKGTVRSEAVVCHGMVFVSGQTA-------SAAGEGNQPAGED--SEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
K +KG+VRSEAV G+VF+SGQTA +GEG+ E EQQ A+AL+K++ELL++ GSS S+VVSALV VR+L +DL GV+KAW RWIDK+NPPARTV+Q
Sbjct: 72 KRFQKGSVRSEAVASGGIVFISGQTALPSPTAGDDSGEGDVGVAESLSPEQQAARALDKIKELLEEVGSSTSKVVSALVCVRDLGQDLPGVEKAWGRWIDKDNPPARTVIQ 182
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: L1JS80_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JS80_GUITC) HSP 1 Score: 75.9 bits (185), Expect = 1.950e-15 Identity = 38/104 (36.54%), Postives = 65/104 (62.50%), Query Frame = 1
Query: 1 VKYLRKGTVRSEAVVCHG-MVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
V+ LR G R +VC+G +V+++GQT+ GED QT + LEK+ LL +AGS SR+++A++++++++ D G++ W+ W+D EN P R V+
Sbjct: 12 VRRLRTGDPRCSGIVCYGGIVYLTGQTSD--------EGEDIRSQTRRVLEKIDALLAEAGSDKSRLLTAMIWLKDIQRDFHGMNAVWNDWVDAENKPTRACVE 107
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A7S2UIG1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIG1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.210e-12 Identity = 35/94 (37.23%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 31 SEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
S V+ + +V++SGQT ++A +D E QT L+KV +LL +AG+S S +++A ++++N+E+D ++ WS W+D EN P R V+A
Sbjct: 47 SRIVIHNNIVYISGQTDTSA--------DDIEGQTLNTLKKVDDLLAEAGTSKSELITASIWLKNIEKDFHSMNAIWSGWVDPENKPVRATVEA 132
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A5B0EW55_9PSED (RidA family protein n=1 Tax=Pseudomonas sp. ANT_J12 TaxID=2597351 RepID=A0A5B0EW55_9PSED) HSP 1 Score: 67.0 bits (162), Expect = 3.820e-12 Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 31 SEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
S AVVC+G VFV GQTAS A +D + QTA+ L+K+ L+ AG +R+VSA +++ +++ D + +++ W W+ + + PAR V++
Sbjct: 14 SRAVVCNGFVFVGGQTAS-------DATQDIKGQTAQVLQKIDGFLEKAGLDKTRIVSAQIWLADIQADFSKMNEVWDAWVPQGHTPARATVES 100
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: J2QEL9_9PSED (Putative translation initiation inhibitor, yjgF family n=3 Tax=unclassified Pseudomonas TaxID=196821 RepID=J2QEL9_9PSED) HSP 1 Score: 67.0 bits (162), Expect = 4.100e-12 Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
++ ++ G S+ V+ G+V++SGQTAS G + A + +QT L K+ LL +AGS +R++S +Y++ +E D A ++ AW WI+ E+ PAR VQA
Sbjct: 4 IQRIQTGPRMSKIVIHSGVVYLSGQTAS----GGEFASGNITEQTQAVLAKIDNLLAEAGSDKTRILSTTIYLKTME-DFATMNVAWESWINPEHTPARATVQA 102
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: V2TM83_9GAMM (Uncharacterized protein n=3 Tax=Acinetobacter TaxID=469 RepID=V2TM83_9GAMM) HSP 1 Score: 66.2 bits (160), Expect = 7.640e-12 Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 10 LRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
L K + EA + ++ ++GQ A +D QT + L+ + L+DAGS+ S+++S +Y++++E+D ++ W WID ENPPART V+A
Sbjct: 6 LHKTSRFCEAAITGNLIHLAGQLAD-------DISQDITSQTQQTLDNIDRFLEDAGSNKSQILSVTIYLKDIEKDYQAMNTLWDAWIDPENPPARTCVEA 99
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A6N7D2P4_9BURK (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Xylophilus sp. TaxID=2653893 RepID=A0A6N7D2P4_9BURK) HSP 1 Score: 66.2 bits (160), Expect = 7.640e-12 Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 28 RSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
RS AVV + MVFV GQTA G+D + QT + L K+++ L +AG+ SR+++A ++++NLE D AG++ W W P R Q
Sbjct: 12 RSRAVVYNNMVFVGGQTAD-------DRGQDIQGQTRQTLAKIEKFLAEAGTDKSRLLTAQIWIKNLERDFAGMNAVWDAWTAPGAAPTRATAQ 98
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: A0A432V142_9HYPH (RidA family protein n=1 Tax=Pseudaminobacter arsenicus TaxID=1851146 RepID=A0A432V142_9HYPH) HSP 1 Score: 65.5 bits (158), Expect = 1.490e-11 Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPAR 297
+K + + RS AVV MV++ GQ G+ Q D + QT + L K+ +LL++AGSS S+VVSA +++++++ D G+++ W WID +NPPAR
Sbjct: 4 MKRIDANSRRSRAVVVGNMVYLGGQV----GDSKQA---DIKVQTRETLAKIDQLLEEAGSSRSKVVSATIWLKSMD-DYDGMNEIWDAWIDADNPPAR 94
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: F4GAJ4_ALIDK (Endoribonuclease L-PSP n=14 Tax=Burkholderiales TaxID=80840 RepID=F4GAJ4_ALIDK) HSP 1 Score: 65.5 bits (158), Expect = 1.680e-11 Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 1
Query: 1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQ 309
+K + RS AVV + MVFV GQTA +D QTA+ L K+++ L +AG+ SR+++A +++++LE D AG+++ W W P R Q
Sbjct: 3 IKRIATDNRRSRAVVYNNMVFVGGQTAD-------DRSQDIRGQTAQTLAKIEKFLAEAGTDKSRLLTAQIWIKDLERDFAGMNEVWDAWTAPNAAPTRATAQ 98
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Match: F3QKS9_9BURK (Endoribonuclease L-PSP n=8 Tax=Proteobacteria TaxID=1224 RepID=F3QKS9_9BURK) HSP 1 Score: 65.1 bits (157), Expect = 2.210e-11 Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 1 VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEKVQELLKDAGSSPSRVVSALVYVRNLEEDLAGVDKAWSRWIDKENPPARTVVQA 312
+K + G SEAVVC G+V++SGQ A D + QTA+ L+ + +LL AGS ++ VY+ N+ + +++AW W+ K NPPAR+V+++
Sbjct: 4 IKRIEPGRRFSEAVVCDGVVYISGQVDLA-------RNRDPKVQTAEVLKTIDDLLAKAGSDKEHILRCTVYLSNMGY-FSEMNQAWEEWVSKTNPPARSVLES 99 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig737.18622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig737.18622.1 >prot_F-serratus_M_contig737.18622.1 ID=prot_F-serratus_M_contig737.18622.1|Name=mRNA_F-serratus_M_contig737.18622.1|organism=Fucus serratus male|type=polypeptide|length=104bp VKYLRKGTVRSEAVVCHGMVFVSGQTASAAGEGNQPAGEDSEQQTAKALEback to top mRNA from alignment at F-serratus_M_contig737:378285..378596+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig737.18622.1 ID=mRNA_F-serratus_M_contig737.18622.1|Name=mRNA_F-serratus_M_contig737.18622.1|organism=Fucus serratus male|type=mRNA|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig737:378285..378596+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig737:378285..378596+ >mRNA_F-serratus_M_contig737.18622.1 ID=mRNA_F-serratus_M_contig737.18622.1|Name=mRNA_F-serratus_M_contig737.18622.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig737:378285..378596+ (Fucus serratus male)back to top |