mRNA_F-serratus_M_contig736.18601.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig736.18601.1
Unique NamemRNA_F-serratus_M_contig736.18601.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig736.18601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig736contigF-serratus_M_contig736:281699..282336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.8762531-CDS-F-serratus_M_contig736:281698..2819081622932229.8762531-CDS-F-serratus_M_contig736:281698..281908Fucus serratus maleCDSF-serratus_M_contig736 281699..281908 +
1690964208.7949412-CDS-F-serratus_M_contig736:281698..2819081690964208.7949412-CDS-F-serratus_M_contig736:281698..281908Fucus serratus maleCDSF-serratus_M_contig736 281699..281908 +
1622932229.894136-CDS-F-serratus_M_contig736:282210..2823361622932229.894136-CDS-F-serratus_M_contig736:282210..282336Fucus serratus maleCDSF-serratus_M_contig736 282211..282336 +
1690964208.8063025-CDS-F-serratus_M_contig736:282210..2823361690964208.8063025-CDS-F-serratus_M_contig736:282210..282336Fucus serratus maleCDSF-serratus_M_contig736 282211..282336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig736.18601.1prot_F-serratus_M_contig736.18601.1Fucus serratus malepolypeptideF-serratus_M_contig736 281699..282336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig736.18601.1

>prot_F-serratus_M_contig736.18601.1 ID=prot_F-serratus_M_contig736.18601.1|Name=mRNA_F-serratus_M_contig736.18601.1|organism=Fucus serratus male|type=polypeptide|length=112bp
YGDSEKEAEEELKEEEARSADDLVSLLMQDMTLAFFTAETLYGEQAPEGA
IPWHDVLWRKVTELKETRDQILVRAKLTPEQRRLVTPLVEALEDQARDGV
GNSPFDAKECDT
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mRNA from alignment at F-serratus_M_contig736:281699..282336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig736.18601.1 ID=mRNA_F-serratus_M_contig736.18601.1|Name=mRNA_F-serratus_M_contig736.18601.1|organism=Fucus serratus male|type=mRNA|length=638bp|location=Sequence derived from alignment at F-serratus_M_contig736:281699..282336+ (Fucus serratus male)
TACGGTGATTCAGAGAAGGAGGCGGAGGAGGAACTTAAGGAGGAGGAGGC
ACGCTCGGCCGACGATCTGGTTTCCCTGCTGATGCAAGACATGACCTTAG
CATTCTTCACTGCAGAGACGCTGTACGGCGAACAAGCGCCTGAGGGCGCC
ATACCTTGGCATGATGTTCTGTGGCGTAAGGTCACGGAACTCAAGGAAAC
GCGCGATCAGGCGAGGAGATGTCAAGCGAGAGAGAGAGAGAAGAGCGGAT
TATGAGTTATCCCCCCCTTTGGGTTTTGTTCTCATCTTTAGTAAATAAGT
TGGCTGAGATTGAATCCTTGCTAACGAAAAATTTGGGGTTCGTGGCTTTT
TTTGTGAATGCTTTGTAGGACTCTTTTTTAGCCTTCACCGTCCAATGTTT
TCGCATTTCCGGCCGCAGGCAGGTGGCACCTTGATCTCACGCTTGTAATT
GGGAAGAAGCCACAACCTAATCGCACTGATGTGCGACAATATACTTGCAC
GTTCGCCCGCAGATCCTCGTGCGCGCGAAGCTGACTCCAGAACAACGAAG
ACTGGTCACACCGCTTGTCGAGGCGCTCGAGGACCAAGCTCGGGATGGGG
TAGGCAACTCCCCCTTCGACGCGAAGGAATGTGATACC
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Coding sequence (CDS) from alignment at F-serratus_M_contig736:281699..282336+

>mRNA_F-serratus_M_contig736.18601.1 ID=mRNA_F-serratus_M_contig736.18601.1|Name=mRNA_F-serratus_M_contig736.18601.1|organism=Fucus serratus male|type=CDS|length=672bp|location=Sequence derived from alignment at F-serratus_M_contig736:281699..282336+ (Fucus serratus male)
TACGGTGATTCAGAGAAGGAGGCGGAGGAGGAACTTAAGGAGGAGGAGGC
ACGCTCGGCCGACGATCTGGTTTCCCTGCTGATGCAAGACATGACCTTAG
CATTCTTCACTGCAGAGACGCTGTACGGCGAACAAGCGCCTGAGGGCGCC
ATACCTTGGCATGATGTTCTGTGGCGTAAGGTCACGGAACTCAAGGAAAC
GCGCGATCAGTACGGTGATTCAGAGAAGGAGGCGGAGGAGGAACTTAAGG
AGGAGGAGGCACGCTCGGCCGACGATCTGGTTTCCCTGCTGATGCAAGAC
ATGACCTTAGCATTCTTCACTGCAGAGACGCTGTACGGCGAACAAGCGCC
TGAGGGCGCCATACCTTGGCATGATGTTCTGTGGCGTAAGGTCACGGAAC
TCAAGGAAACGCGCGATCAGATCCTCGTGCGCGCGAAGCTGACTCCAGAA
CAACGAAGACTGGTCACACCGCTTGTCGAGGCGCTCGAGGACCAAGCTCG
GGATGGGGTAGGCAACTCCCCCTTCGACGCGAAGGAATGTGATACCATCC
TCGTGCGCGCGAAGCTGACTCCAGAACAACGAAGACTGGTCACACCGCTT
GTCGAGGCGCTCGAGGACCAAGCTCGGGATGGGGTAGGCAACTCCCCCTT
CGACGCGAAGGAATGTGATACC
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