mRNA_F-serratus_M_contig7358.18587.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7358.18587.1
Unique NamemRNA_F-serratus_M_contig7358.18587.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 7.320e-70
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAK PKKAGDKK+ NKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.020e-63
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAK PKKAGDK K  KRTESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.680e-62
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGD-KKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AK PKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.180e-60
Identity = 104/117 (88.89%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGD-KKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AK PKKA D KKK  KRTESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 189 bits (479), Expect = 3.950e-60
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AK PKKAG K+  NKR E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 6.580e-60
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANK--RTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAK PKK G+K K  K  R ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 187 bits (476), Expect = 1.210e-59
Identity = 98/116 (84.48%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAK PKKA    K+ KRTE+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.730e-58
Identity = 98/116 (84.48%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A  PKKAG K+ + KRTESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (455), Expect = 2.180e-56
Identity = 99/120 (82.50%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKVPKKA--GDKKK-ANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AK  KKA  GDKKK + KR ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Match: A0A7S2U5X6_9STRA (Histone H2B (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U5X6_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.720e-56
Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTK 336
            MAKTPSKKSA VPKKA   K+  KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTK
Sbjct:    6 MAKTPSKKSA-VPKKASTGKRNKKRVESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTK 116
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7358.18587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI7.320e-7097.41Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA3.020e-6387.93Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA4.680e-6288.89Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA3.180e-6088.89Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
H2B_OLILU3.950e-6084.48Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A485K2U0_9STRA6.580e-6084.75Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
B7FWR8_PHATC1.210e-5984.48Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA4.730e-5884.48Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS2.180e-5682.50Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2U5X6_9STRA2.720e-5685.71Histone H2B (Fragment) n=1 Tax=Attheya septentrion... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7358contigF-serratus_M_contig7358:10384..10734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue8.8e-54
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932229.719408-CDS-F-serratus_M_contig7358:10383..107341622932229.719408-CDS-F-serratus_M_contig7358:10383..10734Fucus serratus maleCDSF-serratus_M_contig7358 10384..10734 +
1690964208.7363613-CDS-F-serratus_M_contig7358:10383..107341690964208.7363613-CDS-F-serratus_M_contig7358:10383..10734Fucus serratus maleCDSF-serratus_M_contig7358 10384..10734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7358.18587.1prot_F-serratus_M_contig7358.18587.1Fucus serratus malepolypeptideF-serratus_M_contig7358 10384..10734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7358.18587.1

>prot_F-serratus_M_contig7358.18587.1 ID=prot_F-serratus_M_contig7358.18587.1|Name=mRNA_F-serratus_M_contig7358.18587.1|organism=Fucus serratus male|type=polypeptide|length=117bp
MAKTPSKKSAKVPKKAGDKKKANKRTESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at F-serratus_M_contig7358:10384..10734+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7358.18587.1 ID=mRNA_F-serratus_M_contig7358.18587.1|Name=mRNA_F-serratus_M_contig7358.18587.1|organism=Fucus serratus male|type=mRNA|length=351bp|location=Sequence derived from alignment at F-serratus_M_contig7358:10384..10734+ (Fucus serratus male)
ATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGG
CGACAAGAAGAAAGCCAACAAGAGGACCGAGTCCTATTCGTCTTACATTT
ACAAGGTACTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCGGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCAC
GTGAGGTGCAGACGGCCGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAG
CATGCCGTGTCTGAGGGCACTAAGGCCGTCACCAAATTCACTTCATCCTG
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig7358:10384..10734+

>mRNA_F-serratus_M_contig7358.18587.1 ID=mRNA_F-serratus_M_contig7358.18587.1|Name=mRNA_F-serratus_M_contig7358.18587.1|organism=Fucus serratus male|type=CDS|length=702bp|location=Sequence derived from alignment at F-serratus_M_contig7358:10384..10734+ (Fucus serratus male)
ATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCGG
CGACAAGAAGAAAGCCAACAAGAGGACCGAGTCCTATTCGTCTTACATTT
ACAAGGTACTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCGG
CGAGTCGGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCAC
GTGAGGTGCAGACGGCCGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAAG
CATGCCGTGTCTGAGGGCACTAAGGCCGTCACCAAATTCACTTCATCCTG
AATGGCCAAGACCCCCTCAAAGAAGTCCGCCAAAGTGCCCAAGAAGGCCG
GCGACAAGAAGAAAGCCAACAAGAGGACCGAGTCCTATTCGTCTTACATT
TACAAGGTACTCAAACAAGTTCACCCAGATACGGGTATCTCGAAGCGCGG
CATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGTGTGGCCG
GCGAGTCGGGCAAGCTCACCCGCTATAACAAGAAAGCTACCCTGTCCTCA
CGTGAGGTGCAGACGGCCGTGCGCCTGATGCTTCCAGGAGAGCTCGCCAA
GCATGCCGTGTCTGAGGGCACTAAGGCCGTCACCAAATTCACTTCATCCT
GA
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