mRNA_F-serratus_M_contig735.18578.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig735.18578.1
Unique NamemRNA_F-serratus_M_contig735.18578.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig735.18578.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 6.540e-31
Identity = 69/143 (48.25%), Postives = 80/143 (55.94%), Query Frame = 3 
Query:    6 CHYDQREADVERDLTFCSMD*ASEGVCCTEEQETALEETFNAVGN----PTTECADYYKQVLCGVCGSYSGHLYERLTGDLGTEDGLSMKNELCTELTAACEEQIDLPVYGNLVNGEVDYYCTMHTGGGEEDLFWSYPYELSE 422
            C  D +  D ++ LT+C    A  G CCT E+E  +E  FNA       P+T CA  YKQV+CGVC SYS HLYE LT D G  DGL+MK+E C EL   C   I+ P Y          YC  HTGGG  D FWSYPYE  E
Sbjct:   21 CFIDDKPTDYDQVLTYCDNSIAMSGACCTNEEEDIVEANFNAAFGVGVVPSTACAALYKQVVCGVCHSYSAHLYEYLT-DGGMLDGLTMKSEFCEELVDECAAYIEFPTYDGTS------YCDHHTGGGN-DFFWSYPYEEPE 155
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BLAST of mRNA_F-serratus_M_contig735.18578.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.790e-22
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 3 
Query:    6 CHYDQREADVERDLTFCSMD*ASEGVCCTEEQETALEETFNAVGNPTTECADYYKQVLCGVCGSYSGHLYERLTGDLGTEDGLSMKNELCTELTAACEEQIDLPVYGNLVNGEVDYYCTMHT 371
            C+ D R  D +  L FC    A  G CCT+ +E  ++    AVGN T +C D YKQV+CGVCGSYSGHLYERL  +LG  DG++MK++ C ELT        +   G +   ++D   TM T
Sbjct:   28 CYVDDRPTDPDEILEFCPE--AQSGACCTDAEEALVQLRHEAVGNLTGDCDDLYKQVVCGVCGSYSGHLYERLGAELGVLDGMTMKSDFCEELTPDSSMYWLVGQAGEIKMVDLDDLSTMTT 147
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BLAST of mRNA_F-serratus_M_contig735.18578.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.090e-17
Identity = 48/84 (57.14%), Postives = 51/84 (60.71%), Query Frame = 3 
Query:  171 QVLCGVCGSYSGHLYERLTGDLGTEDGLSMKNELCTELTAACEEQIDLPVYGNLVNGEVDYYCTMHTGGGEEDLFWSYPYELSE 422
            QV+CGVC SYS HLYE LT D G  DGL+MKNE C  L  AC   ID P Y  +       YC  HTGGG  D FWSYPYE  E
Sbjct:   35 QVVCGVCHSYSAHLYEYLT-DGGMLDGLTMKNEFCESLVDACAAYIDFPTYDGVS------YCDHHTGGGA-DFFWSYPYEEPE 110
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig735.18578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4P3_ECTSI6.540e-3148.25Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
D7G6T7_ECTSI1.790e-2244.26WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZF5_9PHAE1.090e-1757.14GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig735contigF-serratus_M_contig735:230483..231701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue7.1e-09
Seed eggNOG ortholog2880.D7G962
KEGG koko:K21430
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0031224,GO:0031225,GO:0031226,GO:0044425,GO:0044459,GO:0044464,GO:0046658,GO:0071944
EggNOG free text desc.scavenger receptor activity
EggNOG OGs2QQKP@2759,COG2133@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size753
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig735.18578.1prot_F-serratus_M_contig735.18578.1Fucus serratus malepolypeptideF-serratus_M_contig735 231206..231373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932228.826878-UTR-F-serratus_M_contig735:230482..2306551622932228.826878-UTR-F-serratus_M_contig735:230482..230655Fucus serratus maleUTRF-serratus_M_contig735 230483..230655 +
1690964208.3281808-UTR-F-serratus_M_contig735:230482..2306551690964208.3281808-UTR-F-serratus_M_contig735:230482..230655Fucus serratus maleUTRF-serratus_M_contig735 230483..230655 +
1622932228.8432987-UTR-F-serratus_M_contig735:231121..2312051622932228.8432987-UTR-F-serratus_M_contig735:231121..231205Fucus serratus maleUTRF-serratus_M_contig735 231122..231205 +
1690964208.3427248-UTR-F-serratus_M_contig735:231121..2312051690964208.3427248-UTR-F-serratus_M_contig735:231121..231205Fucus serratus maleUTRF-serratus_M_contig735 231122..231205 +
1622932228.8797853-UTR-F-serratus_M_contig735:231373..2317011622932228.8797853-UTR-F-serratus_M_contig735:231373..231701Fucus serratus maleUTRF-serratus_M_contig735 231374..231701 +
1690964208.3618758-UTR-F-serratus_M_contig735:231373..2317011690964208.3618758-UTR-F-serratus_M_contig735:231373..231701Fucus serratus maleUTRF-serratus_M_contig735 231374..231701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932228.8618393-CDS-F-serratus_M_contig735:231205..2313731622932228.8618393-CDS-F-serratus_M_contig735:231205..231373Fucus serratus maleCDSF-serratus_M_contig735 231206..231373 +
1690964208.3521426-CDS-F-serratus_M_contig735:231205..2313731690964208.3521426-CDS-F-serratus_M_contig735:231205..231373Fucus serratus maleCDSF-serratus_M_contig735 231206..231373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig735.18578.1

>prot_F-serratus_M_contig735.18578.1 ID=prot_F-serratus_M_contig735.18578.1|Name=mRNA_F-serratus_M_contig735.18578.1|organism=Fucus serratus male|type=polypeptide|length=56bp
MKNELCTELTAACEEQIDLPVYGNLVNGEVDYYCTMHTGGGEEDLFWSYP
YELSE*
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mRNA from alignment at F-serratus_M_contig735:230483..231701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig735.18578.1 ID=mRNA_F-serratus_M_contig735.18578.1|Name=mRNA_F-serratus_M_contig735.18578.1|organism=Fucus serratus male|type=mRNA|length=1219bp|location=Sequence derived from alignment at F-serratus_M_contig735:230483..231701+ (Fucus serratus male)
TGCATTGCCACTATGATCAGCGAGAGGCCGATGTCGAAAGAGATCTGACG
TTTTGCTCCATGGACTAGGCCTCCGAAGGCGTTTGCTGCACCGAAGAGCA
AGAGACAGCGCTAGAAGAAACGTTCAACGCTGTCGGCAATCCTACTACAG
AGTGTGCCGACTACTACAAACAGGTGTCGTGTCATTGGCAGAACGTTGTC
TCATGATTGTTATGTAATGCAACATCGAGGGTTAGATGTAGAAAACATAA
TCTGCCACCCCGTGCCCCCGACGATTATTATTTCCAGGCAGCGTTGAGTT
ATTCAATGTGTCGGTCCACTGTTCGCCTTGTGTGTGTGTCGGCTTTTTAT
AGTATTTCGTTGAAGGTATCAAGCAGTGGACCCTCCTGCTCACGATGCCT
GGCGGAGACTACTCACAAGTCGAGTGTCCATCGTACCTTGCCTTTGTTTT
AAAGTATACGCCACCGACCAAATATACGAGGTATCGTGTTTAGGGAACAT
ATGACAACGAACTACACATGTTTCCCGGACTTCGAAAAAAGTTATAGTGA
GGTGGTGCGCGGTGTGAGTAATATGAATAGTTTAAGTGTGAAGTGCGTGA
GAGACGTCTTCTTTTGATTTATTCTCCTTCATGCCCCAGGTACTGTGCGG
CGTATGTGGATCTTACAGCGGACACCTCTACGAGCGCTTGACAGGTGACC
TCGGGACGGAAGATGGTCTGTCGATGAAGAATGAATTATGTACGGAGCTT
ACCGCAGCATGCGAGGAGCAAATTGATCTTCCTGTATACGGCAACCTGGT
AAACGGGGAGGTGGACTATTATTGCACGATGCACACTGGAGGCGGGGAAG
AAGATCTGTTTTGGTCCTATCCGTACGAATTGAGTGAGTAGCAGTAATGC
ACAGCAATACGGGTACAAGTTGAAGGCTCGAAGTTTTAGCCTTAAGAACC
CGGGCTATTTTTTCTGAATACGGTCGAGCCTTCAAAATACTATACTGGTG
GTGCATTTTGTATAATATCTCTTTATGGTCATGACTGGCTTGATGCAGCA
AATTAAGAGTTGAACTTTCCTCGACTTGATCGAATACACTGAGTGAGTAA
CAACGCGCAGTGTACAGGGTTCAACTTGAAGGCGCGCAGGTTTCGCTTGA
AGAGCACGGGCTATCTATGGCCCGAGAGTTTTAATGGCATACAGTATATG
ATACCACTGATGCCTGGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig735:230483..231701+

>mRNA_F-serratus_M_contig735.18578.1 ID=mRNA_F-serratus_M_contig735.18578.1|Name=mRNA_F-serratus_M_contig735.18578.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig735:230483..231701+ (Fucus serratus male)
ATGAAGAATGAATTATGTACGGAGCTTACCGCAGCATGCGAGGAGCAAAT
TGATCTTCCTGTATACGGCAACCTGGTAAACGGGGAGGTGGACTATTATT
GCACGATGCACACTGGAGGCGGGGAAGAAGATCTGTTTTGGTCCTATCCG
TACGAATTGAGTGAGTAGATGAAGAATGAATTATGTACGGAGCTTACCGC
AGCATGCGAGGAGCAAATTGATCTTCCTGTATACGGCAACCTGGTAAACG
GGGAGGTGGACTATTATTGCACGATGCACACTGGAGGCGGGGAAGAAGAT
CTGTTTTGGTCCTATCCGTACGAATTGAGTGAGTAG
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