mRNA_F-serratus_M_contig734.18568.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig734.18568.1 vs. uniprot
Match: D8LQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ90_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.540e-53 Identity = 177/495 (35.76%), Postives = 233/495 (47.07%), Query Frame = 1
Query: 271 LFLTHCGIVVGVGVTLWIRASPPQPLQPGPLSYDPDASRHPRRAQPWVDAE-------EYDGMKGIAESSGRRSRRKVGVISVENTRRLLMALVLTWFAVDAVSVLCFFRLARSIESPWLALTLFQASVVYAVWVGASVASKGSKKLEE-KTTFRYLVASWHLVLILVVAAARMTAPAAVGSPGWDKAAFREGVGSVLVAAAAWQLARVGRRRVERSARYGMVAALGKVLESVDHDRQLTRESMLELAFGRWLVDYWSQPPRFSAVDMRSMLGQAASSIANGEL------------------RGRST-PLMNVFGSDAALDWRDRSPMEAASATSELIGALMGFMKERPSNSPPTRLEAALE---PLNPSWW--SSWAALLLMACPCLCALALLLLDHALRGLAVSWTTAGFMLSLAGPVGVEVLRFKMLRGEVMQIKAGEESSARAPPMASRASTDGS----LSFLLHRTSPELSCVLSNARLALESLRRDRPG 1647
LFL GIV+ G LW+R+ P + E D KG+ G R +S R L++ L L A+DA + CF RLA S WLA+ LF AS VYA VGASV G +L+ + FR LVASWH +L+L TA A+ WD+ R+G+GSVL++ AAWQL + RRVE + RYG+VA + K L + +L+ ES+LELA GRWLV+YWSQPP FSA ++R ML QA SSIA L RGRS+ + + F D RD + A + + + AL G+++ R S P +L +E +P W SS A LL ACP LCA LLL + G W F+++LAGP VEV R ++LR E+ + K LS LL ++P L V NA E L D G
Sbjct: 2 LFLALWGIVLLAGAALWVRSEPMRTTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVESDDGKGVV-GGGHREGESTAAVSARKWRDLVVLLALAPPALDATAQFCFLRLAARSCSAWLAVGLFIASTVYACLVGASVVVAGVAELKGGEAKFRCLVASWHALLLL-------TAVGALSQQQWDRTVVRQGLGSVLLSLAAWQLGGLSARRVEGAVRYGLVATVQKALGEASNHEKLSPESLLELAAGRWLVEYWSQPPTFSAPEVREMLVQAVSSIARERLLGSTSRRGGXXXXXXXXXRGRSSGDIQDTFVKDGV---RDSPELSEAPSPAGGVEALTGWLEGRGSEPPVPKLWHPVENPASASPGWVLVSSEAPLLWRACPTLCASVFLLLRSLVGG--APWMEWAFLVALAGPAAVEVWRLRVLRKELTRKKRDHRXXXXXXXXXXXXXXXXXAADRLSLLLRESNPPLENVWKNAVRLAEKLGEDPAG 483
BLAST of mRNA_F-serratus_M_contig734.18568.1 vs. uniprot
Match: A0A6H5JPX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX7_9PHAE) HSP 1 Score: 198 bits (504), Expect = 2.370e-47 Identity = 172/480 (35.83%), Postives = 227/480 (47.29%), Query Frame = 1
Query: 271 LFLTHCGIVVGVGVTLWIRASPPQP-LQPGPLSYDPDASRHPRR---AQPWVDAEEYDGMKGI-AESSGRRSRRKVGVISVENTRRLLMALVLTWFAVDAVSVLCFFRLARSIESPWLALTLFQASVVYAVWVGASVASKGSKKLEE-KTTFRYLVASWHLVLILVVAAARMTAPAAVGSPGWDKAAFREGVGSVLVAAAAWQLARVGRRRVERSARYGMVAALGKVL-ESVDHD----------------------------------------------RQLTRESMLELAFGRWLVDYWSQPPRFSAVDMRSMLGQAASSIANGEL-------------------RGRSTPLMN-VFGSDAALDWRDRSPMEAASATSELIGALMGFMKERPSNSPPTRLEAALEPL---NPSWW--SSWAALLLMACPCLCALALLLLDHALRGLAVSWTTAGFMLSLAGPVGVEVLRFKMLRGEV 1476
LFL GIV+ G LW+R+ P + L P P S + SR RR AQ W A E + G A G S R L++ L L A+DA + CF R+A S WLA+ LF AS VYA VGASV G +L+ + FR LVASWH +L+L TA + WD+ R+G+GS+L++ AAWQL + RRVE + RY +V + K L E+ +H+ + + ES+LELA GRWL++YWSQPP FSA+++R ML QA SSI L RGRS+ M+ F D RD + A + + AL G+++ R S P R +E L +P W SS A LLL ACP CA A LLL + G SW F+L+LAGP VE+ R ++LR EV
Sbjct: 2 LFLALWGIVLLAGAALWVRSEPMRTTLLPYPAS-ELTGSRFRRRGGAAQLWAAAAEVESDDGKGAVGGGNHEGESTVAESARKWRDLVVLLALAPPALDATAQFCFLRMAARSCSAWLAVGLFIASTVYACLVGASVVLAGVAELKGGEGKFRCLVASWHALLLL-------TAVGTLSQQQWDRTVVRQGLGSMLLSLAAWQLGGLSARRVEGAVRYSLVVTVQKALGEASNHEVIAALEVVCLSFSLPALTAEPPYPWPNHPPSGQPRPKHATHKHPCIEKFSPESLLELAAGRWLIEYWSQPPTFSALELREMLVQAVSSITRERLVGSTSGRGXXXXXXXXXXXRGRSSGDMHDTFVKDGV---RDSPELTEAPSPGRGVEALTGWLEGRGSEPPVPRFWRPVETLASASPGWVLVSSEAPLLLRACPTSCASAFLLLRSLVGG--ASWMEWAFLLALAGPAAVELWRLRVLRKEV 468 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig734.18568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig734.18568.1 >prot_F-serratus_M_contig734.18568.1 ID=prot_F-serratus_M_contig734.18568.1|Name=mRNA_F-serratus_M_contig734.18568.1|organism=Fucus serratus male|type=polypeptide|length=1132bp MARRRAQGVTMGSRREQGKGPRRISGAVVTYQAAKHAVEDLCSATPMRLGback to top mRNA from alignment at F-serratus_M_contig734:197037..210533- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig734.18568.1 ID=mRNA_F-serratus_M_contig734.18568.1|Name=mRNA_F-serratus_M_contig734.18568.1|organism=Fucus serratus male|type=mRNA|length=13497bp|location=Sequence derived from alignment at F-serratus_M_contig734:197037..210533- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig734:197037..210533- >mRNA_F-serratus_M_contig734.18568.1 ID=mRNA_F-serratus_M_contig734.18568.1|Name=mRNA_F-serratus_M_contig734.18568.1|organism=Fucus serratus male|type=CDS|length=6792bp|location=Sequence derived from alignment at F-serratus_M_contig734:197037..210533- (Fucus serratus male)back to top |