mRNA_F-serratus_M_contig734.18564.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig734.18564.1
Unique NamemRNA_F-serratus_M_contig734.18564.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig734.18564.1 vs. uniprot
Match: A0A6H5L313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L313_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 8.940e-46
Identity = 92/161 (57.14%), Postives = 111/161 (68.94%), Query Frame = 2 
Query:   20 PRHGVEHLTCVYCGEETGPAVAGHLEDCYLQAAAARNERLESATLLTASERHSFFPGGS---ASSKRRTGVIGPILPSDTAVAVGRQLLSRTVCYADFDNLPDPGLFQLHDDLKGWMGATSRLDLLWKELVRQRNAAIQELHDIDKEEAALEMHLRRGWME 493
            P  GV++ TCVYCGEETGP V+ HLE CY +  A RNERL+ ATL    + H F  GGS   A+S      + P    D+  A+GRQLLSR + YA+FD+LPDP  FQLH DLKGW  + SRLD L+KELVRQRNAAI EL  +D+EEA LE+HLR  WM+
Sbjct: 1096 PSGGVQNFTCVYCGEETGPRVSEHLERCYRKTTAMRNERLKHATLRPLPDNH-FLQGGSRLGAASVTEPVSLPPSACLDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMK 1255
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BLAST of mRNA_F-serratus_M_contig734.18564.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.220e-45
Identity = 94/167 (56.29%), Postives = 113/167 (67.66%), Query Frame = 2 
Query:    2 PPPEKIPRHGVEHLTCVYCGEETGPAVAGHLEDCYLQAAAARNERLESATLLTASERHSFFPGGS---ASSKRRTGVIGPILPSDTAVAVGRQLLSRTVCYADFDNLPDPGLFQLHDDLKGWMGATSRLDLLWKELVRQRNAAIQELHDIDKEEAALEMHLRRGWME 493
            PPP   P  GV++  CVYCGEETGP V+ HLE CY +  A RNERL+ ATL    + H F  GGS   A+S      + P    D+  A+GRQLLSR + YA+FD+LPDP  FQLH DLKGW  + SRLD L+KELVRQRNAAI EL  +D+EEA LE+HLR  WM+
Sbjct: 1119 PPP---PSGGVQNFMCVYCGEETGPWVSEHLERCYRKTTAMRNERLKHATLRPLRDNH-FLQGGSRLGAASVTEPVSVPPSAALDSPAAIGRQLLSRRIAYANFDSLPDPSRFQLHHDLKGWRESPSRLDFLYKELVRQRNAAIYELQALDREEAELEVHLRHDWMK 1281
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig734.18564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L313_9PHAE8.940e-4657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQA3_ECTSI1.220e-4556.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig734contigF-serratus_M_contig734:80565..83539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size830
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig734.18564.1prot_F-serratus_M_contig734.18564.1Fucus serratus malepolypeptideF-serratus_M_contig734 80890..83539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932225.3951876-UTR-F-serratus_M_contig734:80564..808891622932225.3951876-UTR-F-serratus_M_contig734:80564..80889Fucus serratus maleUTRF-serratus_M_contig734 80565..80889 -
1690964206.7163644-UTR-F-serratus_M_contig734:80564..808891690964206.7163644-UTR-F-serratus_M_contig734:80564..80889Fucus serratus maleUTRF-serratus_M_contig734 80565..80889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932225.412877-CDS-F-serratus_M_contig734:80889..809721622932225.412877-CDS-F-serratus_M_contig734:80889..80972Fucus serratus maleCDSF-serratus_M_contig734 80890..80972 -
1690964206.726618-CDS-F-serratus_M_contig734:80889..809721690964206.726618-CDS-F-serratus_M_contig734:80889..80972Fucus serratus maleCDSF-serratus_M_contig734 80890..80972 -
1622932225.432342-CDS-F-serratus_M_contig734:82602..829111622932225.432342-CDS-F-serratus_M_contig734:82602..82911Fucus serratus maleCDSF-serratus_M_contig734 82603..82911 -
1690964206.7365286-CDS-F-serratus_M_contig734:82602..829111690964206.7365286-CDS-F-serratus_M_contig734:82602..82911Fucus serratus maleCDSF-serratus_M_contig734 82603..82911 -
1622932225.4477212-CDS-F-serratus_M_contig734:83427..835391622932225.4477212-CDS-F-serratus_M_contig734:83427..83539Fucus serratus maleCDSF-serratus_M_contig734 83428..83539 -
1690964206.7466652-CDS-F-serratus_M_contig734:83427..835391690964206.7466652-CDS-F-serratus_M_contig734:83427..83539Fucus serratus maleCDSF-serratus_M_contig734 83428..83539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig734.18564.1

>prot_F-serratus_M_contig734.18564.1 ID=prot_F-serratus_M_contig734.18564.1|Name=mRNA_F-serratus_M_contig734.18564.1|organism=Fucus serratus male|type=polypeptide|length=168bp
AAAREDPASWGGALDVRVLWRRDRAGSSGPPGGLLPSGGSRAQRAPRVGN
LTHGLGTTQLFPWWIRELQAADGSHRPYPAVRHRGRRWKAAAKPHRLLRR
LRQSPRPWIVPAPRRLEGLDGGHLEARFAVEGAGPATERGDPRAPRYRQR
GGRAGDAPSSGLDGGGL*
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mRNA from alignment at F-serratus_M_contig734:80565..83539-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig734.18564.1 ID=mRNA_F-serratus_M_contig734.18564.1|Name=mRNA_F-serratus_M_contig734.18564.1|organism=Fucus serratus male|type=mRNA|length=2975bp|location=Sequence derived from alignment at F-serratus_M_contig734:80565..83539- (Fucus serratus male)
GCCGCCGCCCGAGAAGATCCCGCGTCATGGGGTGGAGCACTTGACGTGCG
TGTACTGTGGAGAAGAGACCGGGCCGGCAGTAGCGGGCCACCTGGAGGAC
TGTTACCTTCAGGTGGGGGAAAAAAAAAAAGACACGTTCTGGATTTTGTC
CCCGACTGGGTTGTTTTCGCTGTTGTAATACCTCGGATTGCGCGCACCCA
TTTTCGCAAGAACGTCGCGGCGAAGGACTTTTCGTCAGGGAGCTGCACGC
GGAACCGTGGCTTGCGACCGAGTTGCAAGATCTTGCGCTACATAAACATA
AGAAAGCACACGCGAAGTCAGTTTACTGCAGCATGTTTTGGGTGGGTAGT
CGGGGGTAAGACGAGAGGGTCTATGTGACCGAAACGGATAGTCTTGTGAC
GATGGCCTCCGCTGAATCCTTCCTTCCGACTAAAGAAGCGACACCTCCCG
GGCACGCTCGTTCTCCCACATGATATCTAGCGCACTTTTCTTTTGGAGTA
AACGACGATAATGAATGCCTCTCTCCCCAAGTGGCGTTCGCTCATCGCGA
ACTCCTGCGATTGTTTTCCTTTTTTATTTCCAATAAAATGAAGCAGCCCG
TTTTGTCGTCGTCGTTGTTGCTGAGCAGGCGGCAGCCGCGCGCAACGAGC
GCCTCGAGTCGGCAACCTTACTCACGGCCTCGGAACGACACAGCTTTTTC
CCTGGTGGATCCGCGAGCTCCAAGCGGCGGACGGGAGTCATCGGCCCTAT
CCTGCCGTCAGACACCGCGGTCGCCGTTGGAAGGCAGCTGCTAAGCCGCA
CCGTCTGCTACGCCGACTTCGACAATCTCCCCGACCCTGGATTGTTCCAG
CTCCACGACGACTTGAAGGGCTGGATGGGGGCCACCTCGAGGCTAGATTT
GCTGTGGAAGGAGCTGGTCCGGCAACGGAACGCGGCGGTGAGAATTATGG
CTCCGTTGTCCGTGTCTTCGGAGAGCCTCGAGAAAACCTCGCCGCAGACT
TACTGGTACCGCAAGTATCGGAGTCTTGGTACACCCCCTAGACCGACTTT
CCAGGCTCGGTTGCTCCACAACCAAGAGGGTTATAAGGGTTATAGTTATA
GGTGACAATGCCGAAAAGGGCGGTTTTCGAAAGATTGATGATCTCGTCCA
GAGCTTTCTTTAGACGTTCTGGTCGGTGTTCACATCCTCTTGGTTGTGGA
GCAATCGAGCCTGGAAAGTCAGTCTAGGGTGTGTGCCAAGATTTCGATAC
TTACGGTTTGTACGAGTATTTGTTTGGGAAGTCGTTGGGCCGTTCCCGTT
GCGGAGCTGCGGGGTACGCAAACGGTGTCGGTTTTGCTTATGGCTACATG
CACGCCGCGAGACGATTGGCTCGAGGTTTGTGCTGACGCGGCTCTTGCTT
GCCGTCCCCCCGATGCGACGAAAAACTATATTGCTGCATATACCAACTCT
GGTTCGTTACAACCCGATTAATATAGGTTTTAATAAAATAACTCTCCTAG
TATAACGACGGTGCTGTTGTACGAGTATTTGGTTGCTGTTGCTCCCATGG
CAGTCGTTCTATGATGTAGGTCGTCGAGGGCCAAAACGGTGGTCTGCCAC
GTTGATTTCGCTAAAAGGCGGATTGTGATGTGTTCTAGTTAGCAGTTGAT
ACCTCGAAACCTTCTGACGTTGGGGACTTGAGTTCGGATCTCGGTGCAGT
CACACGAACTGGAATTTTTCCTCACACACACAAAAAAAAAAAAAAAAAGT
AGTGGAGAACGATTGATTCGTTGGTACACAAAATTCGACGTAACGGTCGA
CGAGGGAAAGGAACGGCGGAATTCTTCTCGCGAGAAAAATTAAGTCAAGC
GCCGCAGAAGGAAGGCGAAGAAATCCTGTGTGATCTTCATCCTGTGTGAC
CCCGGCTGGTGCGTCCACAGTTTGACTTCCAGAATAAATGGAATGATAAC
ACACACACACACACACACACACAGAGCGTGTCCCCTTTGTCGCGTCTGAT
CAGAGGTTTTCGTAATAAGTATCATTGATCCCCCCTCGGGAGGATCAATG
CGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGCGGTTATGT
GCAATTTGATAAATATACATACATACATACATACATACACAAATAAGTAT
CATTGATCCCCCTCGGGATATCAATACATACATAGAATGACTAGGATGAC
AGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAATACACCACACACGG
TATCATTGATCCCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGACT
AGGATCACAGGGCCGGATTGCGCGGTTATGTGCAATTTTTTAATAAATAC
ACACACACACACACGCACATACACACAAAATAAAAATTATACTGGTAGCT
CTTTACACGAAAGCAATTATTGTAGGCCGTTCCTATTTTTTTCACGGCAT
CTCAAGTATTTTTTCAAGTATTTTTCTCGTCGTAAATATTCACCAAGTCT
ATAAACAAGAACGTCGTATTCCGCCCCCTCTCCCGCCCCCTGCCCGTCTT
CTTTAATGCCTCCCAAGATCCAAGAGCTCCACGATATCGACAAAGAGGAG
GCCGCGCTGGAGATGCACCTTCGTCGGGGTTGGATGGAGGTGGGTTATAA
GCGTCAGGCTGGCCCGTGGGATCCGCCGCGTACAGGCTGATCAACGCCAG
CGGGTGTGGGTTTTGTGTAGAGTTTCTTTTTTCGTGTATAAAATATGCGT
GTCTTTTTTGAGCCGTAGGGCGAAAAACAAAACGAAAAATATCCACGTTC
CTGACGGTATGGTAGTCTTTTTGTTGTCCCCTGTCCCCATCGTGAAATTA
TTTTTACTGGTAAATGGTCGTGGTCTTAGATGCTTGTACTGAAGTCTGGT
AGACGGATAGATGAGAAGTTGTGTTTCATTTTTCTTCCGGCTCTTTTTGT
TTTGTTTTTGTTTGTACGGTACAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig734:80565..83539-

>mRNA_F-serratus_M_contig734.18564.1 ID=mRNA_F-serratus_M_contig734.18564.1|Name=mRNA_F-serratus_M_contig734.18564.1|organism=Fucus serratus male|type=CDS|length=1008bp|location=Sequence derived from alignment at F-serratus_M_contig734:80565..83539- (Fucus serratus male)
GCCGCCGCCCGAGAAGATCCCGCGTCATGGGGTGGAGCACTTGACGTGCG
TGTACTGTGGAGAAGAGACCGGGCCGGCAGTAGCGGGCCACCTGGAGGAC
TGTTACCTTCAGGCCGCCGCCCGAGAAGATCCCGCGTCATGGGGTGGAGC
ACTTGACGTGCGTGTACTGTGGAGAAGAGACCGGGCCGGCAGTAGCGGGC
CACCTGGAGGACTGTTACCTTCAGGCGGCAGCCGCGCGCAACGAGCGCCT
CGAGTCGGCAACCTTACTCACGGCCTCGGAACGACACAGCTTTTTCCCTG
GTGGATCCGCGAGCTCCAAGCGGCGGACGGGAGTCATCGGCCCTATCCTG
CCGTCAGACACCGCGGTCGCCGTTGGAAGGCAGCTGCTAAGCCGCACCGT
CTGCTACGCCGACTTCGACAATCTCCCCGACCCTGGATTGTTCCAGCTCC
ACGACGACTTGAAGGGCTGGATGGGGGCCACCTCGAGGCTAGATTTGCTG
TGGAAGGAGCTGGTCCGGCAACGGAACGCGGCGGCGGCAGCCGCGCGCAA
CGAGCGCCTCGAGTCGGCAACCTTACTCACGGCCTCGGAACGACACAGCT
TTTTCCCTGGTGGATCCGCGAGCTCCAAGCGGCGGACGGGAGTCATCGGC
CCTATCCTGCCGTCAGACACCGCGGTCGCCGTTGGAAGGCAGCTGCTAAG
CCGCACCGTCTGCTACGCCGACTTCGACAATCTCCCCGACCCTGGATTGT
TCCAGCTCCACGACGACTTGAAGGGCTGGATGGGGGCCACCTCGAGGCTA
GATTTGCTGTGGAAGGAGCTGGTCCGGCAACGGAACGCGGCGATCCAAGA
GCTCCACGATATCGACAAAGAGGAGGCCGCGCTGGAGATGCACCTTCGTC
GGGGTTGGATGGAGGTGGGTTATAAATCCAAGAGCTCCACGATATCGACA
AAGAGGAGGCCGCGCTGGAGATGCACCTTCGTCGGGGTTGGATGGAGGTG
GGTTATAA
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