mRNA_F-serratus_M_contig733.18551.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig733.18551.1
Unique NamemRNA_F-serratus_M_contig733.18551.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig733.18551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig733contigF-serratus_M_contig733:2811..3555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size282
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig733.18551.1prot_F-serratus_M_contig733.18551.1Fucus serratus malepolypeptideF-serratus_M_contig733 2886..3489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.467234-UTR-F-serratus_M_contig733:2810..28851622932224.467234-UTR-F-serratus_M_contig733:2810..2885Fucus serratus maleUTRF-serratus_M_contig733 2811..2885 +
1690964206.4066646-UTR-F-serratus_M_contig733:2810..28851690964206.4066646-UTR-F-serratus_M_contig733:2810..2885Fucus serratus maleUTRF-serratus_M_contig733 2811..2885 +
1622932224.5238845-UTR-F-serratus_M_contig733:3489..35551622932224.5238845-UTR-F-serratus_M_contig733:3489..3555Fucus serratus maleUTRF-serratus_M_contig733 3490..3555 +
1690964206.4408958-UTR-F-serratus_M_contig733:3489..35551690964206.4408958-UTR-F-serratus_M_contig733:3489..3555Fucus serratus maleUTRF-serratus_M_contig733 3490..3555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.4831538-CDS-F-serratus_M_contig733:2885..30021622932224.4831538-CDS-F-serratus_M_contig733:2885..3002Fucus serratus maleCDSF-serratus_M_contig733 2886..3002 +
1690964206.4184804-CDS-F-serratus_M_contig733:2885..30021690964206.4184804-CDS-F-serratus_M_contig733:2885..3002Fucus serratus maleCDSF-serratus_M_contig733 2886..3002 +
1622932224.5067556-CDS-F-serratus_M_contig733:3465..34891622932224.5067556-CDS-F-serratus_M_contig733:3465..3489Fucus serratus maleCDSF-serratus_M_contig733 3466..3489 +
1690964206.4293644-CDS-F-serratus_M_contig733:3465..34891690964206.4293644-CDS-F-serratus_M_contig733:3465..3489Fucus serratus maleCDSF-serratus_M_contig733 3466..3489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig733.18551.1

>prot_F-serratus_M_contig733.18551.1 ID=prot_F-serratus_M_contig733.18551.1|Name=mRNA_F-serratus_M_contig733.18551.1|organism=Fucus serratus male|type=polypeptide|length=47bp
MTPGKIDEKADAEYIRSLEWYHTLPDVLASGAEGDDQRNVQNGRSW*
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mRNA from alignment at F-serratus_M_contig733:2811..3555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig733.18551.1 ID=mRNA_F-serratus_M_contig733.18551.1|Name=mRNA_F-serratus_M_contig733.18551.1|organism=Fucus serratus male|type=mRNA|length=745bp|location=Sequence derived from alignment at F-serratus_M_contig733:2811..3555+ (Fucus serratus male)
GCAAGGGTTCCCGATCTGGGCTTCGGCGACGTCTTAGATGCTGTGCGCCA
CCTTCTGTGGTTTGCGCTTGACCTCATGACGCCGGGGAAAATTGATGAGA
AGGCCGATGCCGAGTACATCCGTTCATTGGAATGGTATCATACGCTGCCC
GATGTTTTAGCTAGTGGAGCTGAGGGCGACGATCAGCGGAACGTGAGGAA
GACACATGCGTAGTGTACAGAAGCTTAGCGAAGGATGTCGAATCGTTGTC
GTCACGGACTCAGCCGTGAAGGGCCTCTGGTGCCTCGTGAGGTGGCCAAG
CATTCGATGGAGCCAACAATGGCTTGGGTGGAGGCTATACGTTGCATATA
TTATTCCGATACGAGTACGACCTGGAGCCTATGTCCAGCACGAGTGAGTA
AGCTCTCCCATTCTATAAAAGAACGGCATACTTTTCTGCACGTAGCGAAG
TCATGACCTAGGAGATGTTTTTGATCCATTCCTATCCGTAGCGCTCGATG
AGCGCACCAGAAACTCTGGAAAGCTGGAATACCTGAAAGGCCCCGTGTAC
ATTCAGCGAACCCTAACCGAGCGTGTTCCCCCTTCCACGTTCGTCCAAAC
CCCTTGCTATACTATGCTTTACTGTACGGTACGCCGACGACGACTGTGGT
ACTAGGTTCAAAATGGACGGAGCTGGTGATTTGAGGCGGGGAACCGACCT
CGCAATTCTCGAGAGCTGAGGGGTGGCGAAAGAGTTGATTCAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig733:2811..3555+

>mRNA_F-serratus_M_contig733.18551.1 ID=mRNA_F-serratus_M_contig733.18551.1|Name=mRNA_F-serratus_M_contig733.18551.1|organism=Fucus serratus male|type=CDS|length=282bp|location=Sequence derived from alignment at F-serratus_M_contig733:2811..3555+ (Fucus serratus male)
ATGACGCCGGGGAAAATTGATGAGAAGGCCGATGCCGAGTACATCCGTTC
ATTGGAATGGTATCATACGCTGCCCGATGTTTTAGCTAGTGGAGCTGAGG
GCGACGATCAGCGGAACATGACGCCGGGGAAAATTGATGAGAAGGCCGAT
GCCGAGTACATCCGTTCATTGGAATGGTATCATACGCTGCCCGATGTTTT
AGCTAGTGGAGCTGAGGGCGACGATCAGCGGAACGTTCAAAATGGACGGA
GCTGGTGAGTTCAAAATGGACGGAGCTGGTGA
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