mRNA_F-serratus_M_contig1242.1853.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: D7G1V9_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V9_ECTSI) HSP 1 Score: 189 bits (481), Expect = 7.530e-61 Identity = 86/102 (84.31%), Postives = 94/102 (92.16%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGEMV +WAQMWGAKVKMPTDMRDD+LRDAIET R AL C DF+AEGL AAEKIKKHFDARW+PSWHVIIGRNFGSFVTHETTCFVYFY+ DKA+M++KAG
Sbjct: 1 MGEMVPDWAQMWGAKVKMPTDMRDDMLRDAIETCRDALDHCADFEAEGLAAAEKIKKHFDARWDPSWHVIIGRNFGSFVTHETTCFVYFYLADKAIMMYKAG 102
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A836CJA1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJA1_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.700e-48 Identity = 68/102 (66.67%), Postives = 84/102 (82.35%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
M M +W MWGAKVK+P DM DD+L+DAI+TSR L C+DF+AEGL +AEKIK+H D +W+P WHV+IGRNFGSFVTHET F+YFY+GDKAVM++KAG
Sbjct: 1 MPSMGDDWRMMWGAKVKLPLDMPDDILKDAIDTSREVLDKCHDFEAEGLASAEKIKRHLDEQWDPHWHVVIGRNFGSFVTHETRMFLYFYIGDKAVMMYKAG 102
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A7S2W886_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W886_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.680e-43 Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGE V EW MWGAKVK P D+ DD+L+DAI TS+ + DF+AEG+ AEKIK+ FD RW P WHVIIG+NFGSFVTHET F+YFY DKAVMI+KAG
Sbjct: 1 MGEEVPEWQMMWGAKVKTPVDVPDDMLKDAILTSQRLIGEATDFEAEGVDVAEKIKREFDERWTPYWHVIIGKNFGSFVTHETKRFLYFYFDDKAVMIYKAG 102
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A7S1TPD3_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPD3_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.270e-41 Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 13 VSEWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
+ EW+ MWGA+VK+P DM DD+L+DA+ET+R+ DF+ +GL AAE IK FD +W P+WHV++GR FGSFVTHET CFVYFY+ DKAVM++KAG
Sbjct: 6 IQEWSTMWGARVKVPCDMGDDMLKDAVETTRSVFEEFPDFENDGLKAAEAIKLAFDEKWTPNWHVVVGRGFGSFVTHETKCFVYFYLDDKAVMMYKAG 103
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A7S1CI82_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI82_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.330e-37 Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 1
Query: 1 MGEMVS-EWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGE EW MWGAKVK P+D+ DD+L DAI +R AL D+++EG +K+KK FD +W P WH ++G NFGSFVTHE FVYFYV DKAV++FKAG
Sbjct: 1 MGESAPVEWKHMWGAKVKWPSDLPDDMLEDAITVTRAALEGIEDWESEGDAVVDKLKKTFDEKWGPHWHAVVGTNFGSFVTHEARRFVYFYVADKAVLLFKAG 103
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A7S2WLS4_9STRA (Dynein light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WLS4_9STRA) HSP 1 Score: 123 bits (308), Expect = 1.880e-34 Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGE V EW +WGAKVK P +M DD+L+DAI T L+ C +F++ G +A + IK H D +W+P W IGRNFGS V+HET FV+FY DKAVM++K G
Sbjct: 3 MGEEVREWQTIWGAKVKTPVEMPDDILKDAITTVTNELAACENFESNGNLAVQNIKDHMDHKWSPHWCCFIGRNFGSKVSHETRRFVFFYHNDKAVMLYKIG 104
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A5D6XID8_9STRA (Dynein light chain n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XID8_9STRA) HSP 1 Score: 120 bits (300), Expect = 3.020e-33 Identity = 60/104 (57.69%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIE--TSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGE W MWGAKVKMP DM DDVL DAI+ TSR A +++ +GL E+IK H D W P W V IGRNFGS+VTH T FVYFY +KAVM++KAG
Sbjct: 1 MGE-APNWQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLAKYDTEEWEKQGLTVCEEIKAHMDELWEPHWVVCIGRNFGSYVTHVTRNFVYFYFNEKAVMVYKAG 103
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: H3GHN7_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3GHN7_PHYRM) HSP 1 Score: 119 bits (298), Expect = 6.080e-33 Identity = 61/104 (58.65%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIE--TSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGE S W MWGAKVKMP DM DDVL DAI+ TSR +++ GL E+IK H D W+P W V IGRNFGSFVTH T FV+FY +KAVMI+KAG
Sbjct: 1 MGEAPS-WQHMWGAKVKMPCDMEDDVLEDAIKHVTSRLTKYDTEEWEKNGLAVCEEIKAHLDEAWDPHWVVCIGRNFGSFVTHVTRNFVFFYYNEKAVMIYKAG 103
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: K3WRF9_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF9_GLOUD) HSP 1 Score: 115 bits (287), Expect = 2.870e-31 Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 1 MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIE--TSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
MGE S W MWGAKVKMP DM DDVL D I+ T+R A +++ +GL E++K H D W P W V IGRNFGS+VTH T FV+FY +KA+M++KAG
Sbjct: 1 MGEAPS-WQYMWGAKVKMPCDMEDDVLEDVIKHVTTRLAKFDTEEWEKKGLAVCEELKAHMDTLWEPHWVVCIGRNFGSYVTHVTRNFVFFYYNEKAIMVYKAG 103
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Match: A0A2D4BQP4_PYTIN (Dynein light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQP4_PYTIN) HSP 1 Score: 112 bits (279), Expect = 4.730e-30 Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 1
Query: 22 WAQMWGAKVKMPTDMRDDVLRDAIE--TSRTALSLCNDFDAEGLVAAEKIKKHFDARWNPSWHVIIGRNFGSFVTHETTCFVYFYVGDKAVMIFKAG 306
W MWGAKVKMP DM DDVL D I+ TSR +++ +GL E+IK H D W P W V IGRNFGSFVTH T V+FY +KA+M++KAG
Sbjct: 7 WQHMWGAKVKMPCDMEDDVLEDTIKIVTSRLTKYDTEEWETKGLSVCEEIKAHLDETWEPHWVVCIGRNFGSFVTHVTRNXVFFYFNEKAIMVYKAG 103 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1242.1853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1242.1853.1 >prot_F-serratus_M_contig1242.1853.1 ID=prot_F-serratus_M_contig1242.1853.1|Name=mRNA_F-serratus_M_contig1242.1853.1|organism=Fucus serratus male|type=polypeptide|length=103bp MGEMVSEWAQMWGAKVKMPTDMRDDVLRDAIETSRTALSLCNDFDAEGLVback to top mRNA from alignment at F-serratus_M_contig1242:79498..89029- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1242.1853.1 ID=mRNA_F-serratus_M_contig1242.1853.1|Name=mRNA_F-serratus_M_contig1242.1853.1|organism=Fucus serratus male|type=mRNA|length=9532bp|location=Sequence derived from alignment at F-serratus_M_contig1242:79498..89029- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1242:79498..89029- >mRNA_F-serratus_M_contig1242.1853.1 ID=mRNA_F-serratus_M_contig1242.1853.1|Name=mRNA_F-serratus_M_contig1242.1853.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1242:79498..89029- (Fucus serratus male)back to top |