mRNA_F-serratus_M_contig7324.18547.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7324.18547.1
Unique NamemRNA_F-serratus_M_contig7324.18547.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A6H5KK32_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK32_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.160e-52
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 1
Query:    1 RRFPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLE 312
            RRFPN LLE VA+YG++LSAGQRQ VCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAF DCTVLTIAHRLNTIMDSDRILVMDDG+VAELDSPAALLE
Sbjct: 1562 RRFPNSLLEHVAEYGESLSAGQRQLVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFRDCTVLTIAHRLNTIMDSDRILVMDDGKVAELDSPAALLE 1665          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: UPI000D0C7A1E (multidrug resistance-associated protein 1-like n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI000D0C7A1E)

HSP 1 Score: 144 bits (363), Expect = 2.140e-41
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1
Query:    1 RRFPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLEVR 318
            R  P GL   V++ G+N+S GQRQ +CLARALLRKT++L+LDEAT++VD ETD+ IQ T+RS F DCTVLTIAHR+NTIMDSDR+LV+D GRV E DSP+ LL+ R
Sbjct:   91 RGLPAGLQHEVSEGGENISVGQRQLICLARALLRKTKILILDEATAAVDLETDDFIQRTIRSEFADCTVLTIAHRINTIMDSDRVLVLDQGRVVEFDSPSDLLKNR 196          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A1B6L838_9HEMI (ABC transporter domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6L838_9HEMI)

HSP 1 Score: 142 bits (357), Expect = 1.190e-40
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    1 RRFPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLEV 315
            R  P GL  ++ + GDNLS GQRQ VCLARALLRKT+VL+LDEAT+++D ETD++IQ T+R  F DCTVLTIAHRLNTIMDSDR++V+D G V E DSP  LL +
Sbjct:   78 RNLPAGLSYTITEGGDNLSVGQRQLVCLARALLRKTQVLILDEATAAIDLETDDLIQQTIRKEFRDCTVLTIAHRLNTIMDSDRVVVLDKGMVKEFDSPGNLLNI 182          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: UPI0008114D54 (canalicular multispecific organic anion transporter 2-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008114D54)

HSP 1 Score: 140 bits (353), Expect = 1.490e-40
Identity = 69/101 (68.32%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   16 GLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLEVR 318
            GL   VA+ G+NLS GQR  +CL RALLRKT++L+LDEAT+++DYETD +IQ+T+RS F DCTVLTIAHRLNTI+D+D+ILV+D GRVAE DSP+ALL  R
Sbjct:   43 GLDYVVAENGENLSVGQRALICLGRALLRKTKILVLDEATAAIDYETDALIQATIRSEFADCTVLTIAHRLNTILDADKILVLDQGRVAEFDSPSALLADR 143          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A835YZ25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ25_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.000e-40
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 1
Query:    1 RRFPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLE 312
            R  P GL E VA+YG+NLS GQRQ +C+ARALLR++R+LLLDEATSSVD +TD +IQ T+RSAF DCTVLTIAHRLNTI DSDRILVMDDGRVAE   PA LL+
Sbjct: 1430 RGLPEGLNEPVAEYGENLSVGQRQLLCMARALLRRSRLLLLDEATSSVDPQTDALIQKTIRSAFKDCTVLTIAHRLNTITDSDRILVMDDGRVAEFAPPAELLK 1533          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A0B6ZXC1_9EUPU (ABC transporter domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZXC1_9EUPU)

HSP 1 Score: 140 bits (354), Expect = 9.790e-40
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    4 RFPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLE 312
            +F  GL  SV + GDNLS GQRQ VCL RALLRKT++L+LDEAT++VD ETD++IQ T+RS F  CTVLTIAHRLNTIMD DRILV+D GRV E D P+ LLE
Sbjct:  110 KFSEGLDFSVGEGGDNLSIGQRQLVCLGRALLRKTKILVLDEATAAVDVETDDLIQKTIRSEFKSCTVLTIAHRLNTIMDYDRILVLDQGRVVEFDPPSVLLE 212          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A182TH28_9DIPT (ABC transporter domain-containing protein n=1 Tax=Anopheles melas TaxID=34690 RepID=A0A182TH28_9DIPT)

HSP 1 Score: 137 bits (344), Expect = 1.100e-39
Identity = 67/101 (66.34%), Postives = 84/101 (83.17%), Query Frame = 1
Query:   16 GLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLEVR 318
            GL   +A+ G+NLS GQRQ +CLARA+LRKT+VL+LDEAT++VD ETD++IQ T+R+ F DCT+LTIAHRLNTI+DSDR+LV+D G VAE DSP  LL  R
Sbjct:    4 GLDHEIAENGENLSVGQRQLICLARAVLRKTKVLILDEATAAVDLETDDLIQKTIRTEFADCTILTIAHRLNTILDSDRVLVLDKGLVAECDSPQNLLANR 104          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A1B6M9K1_9HEMI (ABC transporter domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M9K1_9HEMI)

HSP 1 Score: 139 bits (349), Expect = 1.380e-39
Identity = 66/99 (66.67%), Postives = 84/99 (84.85%), Query Frame = 1
Query:   16 GLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLE 312
            GLL ++ + G+NLS GQRQ +CLARALLRKT+VL+LDEAT+++D +TDN+IQ+T+R  F DCTVLTIAHRLNTIMDSDR+LV+D G + E DSP  LL+
Sbjct:   71 GLLHTITEGGENLSVGQRQLICLARALLRKTKVLILDEATAAIDLDTDNLIQATIRREFRDCTVLTIAHRLNTIMDSDRVLVLDKGFIKEFDSPQNLLK 169          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: UPI000771BBDF (multidrug resistance-associated protein 1 isoform X1 n=6 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771BBDF)

HSP 1 Score: 148 bits (374), Expect = 2.550e-39
Identity = 68/104 (65.38%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    7 FPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLEVR 318
             PNGL+  V++ GDNLS GQRQ +CLARALLRKTRVL+LDEAT++VD ETD++IQ T+R  F DCT+LTIAHRLNTI+DSD+++V+D GR+ E D+P ALL+++
Sbjct: 1410 LPNGLMHEVSEGGDNLSVGQRQLICLARALLRKTRVLILDEATAAVDLETDDLIQRTIRQEFHDCTILTIAHRLNTILDSDKVIVLDKGRIIEYDAPDALLQIK 1513          
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Match: A0A2R7VYZ7_ONCFA (ABC transporter domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7VYZ7_ONCFA)

HSP 1 Score: 138 bits (348), Expect = 4.440e-39
Identity = 67/99 (67.68%), Postives = 85/99 (85.86%), Query Frame = 1
Query:   16 GLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDYETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPAALLE 312
            GL   +++ G+NLS GQRQ +CLARALLRKT++L+LDEAT++VD ETD++IQ T+R+ F DCTVLTIAHRLNTI+DSDR+LV+D G VAE DSPA LL+
Sbjct:  100 GLQHELSEGGENLSVGQRQLICLARALLRKTKILVLDEATAAVDLETDDLIQKTIRTEFKDCTVLTIAHRLNTIIDSDRVLVLDKGMVAEYDSPAELLK 198          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7324.18547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KK32_9PHAE1.160e-5292.31ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
UPI000D0C7A1E2.140e-4166.04multidrug resistance-associated protein 1-like n=1... [more]
A0A1B6L838_9HEMI1.190e-4065.71ABC transporter domain-containing protein (Fragmen... [more]
UPI0008114D541.490e-4068.32canalicular multispecific organic anion transporte... [more]
A0A835YZ25_9STRA4.000e-4074.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0B6ZXC1_9EUPU9.790e-4068.93ABC transporter domain-containing protein (Fragmen... [more]
A0A182TH28_9DIPT1.100e-3966.34ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1B6M9K1_9HEMI1.380e-3966.67ABC transporter domain-containing protein (Fragmen... [more]
UPI000771BBDF2.550e-3965.38multidrug resistance-associated protein 1 isoform ... [more]
A0A2R7VYZ7_ONCFA4.440e-3967.68ABC transporter domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7324contigF-serratus_M_contig7324:1426..1899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue6.8e-45
Seed eggNOG ortholog2880.D8LB41
KEGG koko:K05665,ko:K05666
KEGG TC3.A.1.208.2,3.A.1.208.8
KEGG Pathwayko01523,ko01524,ko02010,ko04071,ko04976,ko04977,ko05206,map01523,map01524,map02010,map04071,map04976,map04977,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932224.1303937-CDS-F-serratus_M_contig7324:1425..16071622932224.1303937-CDS-F-serratus_M_contig7324:1425..1607Fucus serratus maleCDSF-serratus_M_contig7324 1426..1607 +
1690964206.303816-CDS-F-serratus_M_contig7324:1425..16071690964206.303816-CDS-F-serratus_M_contig7324:1425..1607Fucus serratus maleCDSF-serratus_M_contig7324 1426..1607 +
1622932224.1469634-CDS-F-serratus_M_contig7324:1763..18991622932224.1469634-CDS-F-serratus_M_contig7324:1763..1899Fucus serratus maleCDSF-serratus_M_contig7324 1764..1899 +
1690964206.3180404-CDS-F-serratus_M_contig7324:1763..18991690964206.3180404-CDS-F-serratus_M_contig7324:1763..1899Fucus serratus maleCDSF-serratus_M_contig7324 1764..1899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7324.18547.1prot_F-serratus_M_contig7324.18547.1Fucus serratus malepolypeptideF-serratus_M_contig7324 1426..1899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7324.18547.1

>prot_F-serratus_M_contig7324.18547.1 ID=prot_F-serratus_M_contig7324.18547.1|Name=mRNA_F-serratus_M_contig7324.18547.1|organism=Fucus serratus male|type=polypeptide|length=106bp
RRFPNGLLESVAKYGDNLSAGQRQQVCLARALLRKTRVLLLDEATSSVDY
ETDNVIQSTLRSAFWDCTVLTIAHRLNTIMDSDRILVMDDGRVAELDSPA
ALLEVR
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mRNA from alignment at F-serratus_M_contig7324:1426..1899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7324.18547.1 ID=mRNA_F-serratus_M_contig7324.18547.1|Name=mRNA_F-serratus_M_contig7324.18547.1|organism=Fucus serratus male|type=mRNA|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig7324:1426..1899+ (Fucus serratus male)
AGACGCTTCCCGAACGGTCTGCTGGAGTCAGTGGCGAAGTACGGGGATAA TCTCTCAGCCGGGCAGCGACAGCAGGTGTGTCTTGCTAGGGCGCTCCTGC GTAAGACGCGGGTTTTGCTGCTGGATGAGGCTACATCGTCCGTGGACTAC GAAACAGACAACGTTATCCAGTCCACCCTCAGGTACGACGGGGGCGTACT CGCTATTACAGTATTGTAGGTTTTTTCGTTGTTATATTATTATTTTTTAG TTCATACTTCTATCGTGGGGTCATTTTTTGTGACACAAGATAAGAGACGT GCATGTGTGCATGCGCCGCGCCCCCTGTTTTACTCCAGGTCGGCCTTCTG GGACTGCACCGTCCTCACTATTGCACACCGCCTCAATACCATCATGGACT CCGACCGCATCCTTGTCATGGACGACGGAAGGGTTGCAGAGCTTGACTCC CCCGCCGCGCTGCTTGAGGTACGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig7324:1426..1899+

>mRNA_F-serratus_M_contig7324.18547.1 ID=mRNA_F-serratus_M_contig7324.18547.1|Name=mRNA_F-serratus_M_contig7324.18547.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig7324:1426..1899+ (Fucus serratus male)
AGACGCTTCCCGAACGGTCTGCTGGAGTCAGTGGCGAAGTACGGGGATAA
TCTCTCAGCCGGGCAGCGACAGCAGGTGTGTCTTGCTAGGGCGCTCCTGC
GTAAGACGCGGGTTTTGCTGCTGGATGAGGCTACATCGTCCGTGGACTAC
GAAACAGACAACGTTATCCAGTCCACCCTCAGAGACGCTTCCCGAACGGT
CTGCTGGAGTCAGTGGCGAAGTACGGGGATAATCTCTCAGCCGGGCAGCG
ACAGCAGGTGTGTCTTGCTAGGGCGCTCCTGCGTAAGACGCGGGTTTTGC
TGCTGGATGAGGCTACATCGTCCGTGGACTACGAAACAGACAACGTTATC
CAGTCCACCCTCAGGTCGGCCTTCTGGGACTGCACCGTCCTCACTATTGC
ACACCGCCTCAATACCATCATGGACTCCGACCGCATCCTTGTCATGGACG
ACGGAAGGGTTGCAGAGCTTGACTCCCCCGCCGCGCTGCTTGAGGTACGT
GTCGGCCTTCTGGGACTGCACCGTCCTCACTATTGCACACCGCCTCAATA
CCATCATGGACTCCGACCGCATCCTTGTCATGGACGACGGAAGGGTTGCA
GAGCTTGACTCCCCCGCCGCGCTGCTTGAGGTACGT
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