mRNA_F-serratus_M_contig7311.18543.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7311.18543.1
Unique NamemRNA_F-serratus_M_contig7311.18543.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7311.18543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7311contigF-serratus_M_contig7311:11038..16504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size633
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7311.18543.1prot_F-serratus_M_contig7311.18543.1Fucus serratus malepolypeptideF-serratus_M_contig7311 11038..16363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932223.2543228-CDS-F-serratus_M_contig7311:11037..112881622932223.2543228-CDS-F-serratus_M_contig7311:11037..11288Fucus serratus maleCDSF-serratus_M_contig7311 11038..11288 -
1690964205.8320029-CDS-F-serratus_M_contig7311:11037..112881690964205.8320029-CDS-F-serratus_M_contig7311:11037..11288Fucus serratus maleCDSF-serratus_M_contig7311 11038..11288 -
1622932223.2746751-CDS-F-serratus_M_contig7311:16122..163631622932223.2746751-CDS-F-serratus_M_contig7311:16122..16363Fucus serratus maleCDSF-serratus_M_contig7311 16123..16363 -
1690964205.842811-CDS-F-serratus_M_contig7311:16122..163631690964205.842811-CDS-F-serratus_M_contig7311:16122..16363Fucus serratus maleCDSF-serratus_M_contig7311 16123..16363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932223.2891772-UTR-F-serratus_M_contig7311:16363..165041622932223.2891772-UTR-F-serratus_M_contig7311:16363..16504Fucus serratus maleUTRF-serratus_M_contig7311 16364..16504 -
1690964205.8533354-UTR-F-serratus_M_contig7311:16363..165041690964205.8533354-UTR-F-serratus_M_contig7311:16363..16504Fucus serratus maleUTRF-serratus_M_contig7311 16364..16504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7311.18543.1

>prot_F-serratus_M_contig7311.18543.1 ID=prot_F-serratus_M_contig7311.18543.1|Name=mRNA_F-serratus_M_contig7311.18543.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MNKRARSEQSSDSGSASSVDPSVDVVADPSSSSSRRGSISRSSAAAARAR
ARERRSSCPAATRQPGIATEDLAGATAYHRAGTSEQVPQSWAAAAAAAAT
AAAAMVATTTGSSRRHSTLTLPRGGALSSSAAGGEAWAPPGRFAATTGAR
ASGVIEEDCWLEAT
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mRNA from alignment at F-serratus_M_contig7311:11038..16504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7311.18543.1 ID=mRNA_F-serratus_M_contig7311.18543.1|Name=mRNA_F-serratus_M_contig7311.18543.1|organism=Fucus serratus male|type=mRNA|length=5467bp|location=Sequence derived from alignment at F-serratus_M_contig7311:11038..16504- (Fucus serratus male)
CGGTACTCGAACAGGGTACACTTCTTCCAGTACGAATACCAGTTGCTCAT
TTTGCAAGTTCGACCGTTTCGACTACTGTAGTACACGTCCACCCCAGTCT
CTTTGGTGCCTCAGAGGGCTTTGACGACGGTGCCGGAGACAATGAACAAG
CGAGCACGGTCGGAGCAGAGCTCGGACAGCGGCTCGGCCTCGAGCGTGGA
TCCAAGCGTCGACGTCGTCGCTGACCCATCCTCATCATCCTCCAGACGTG
GGAGTATTTCCCGGAGTAGTGCCGCGGCCGCGCGTGCCCGGGCTCGGGAG
CGAAGGAGCTCGTGCCCCGCGGCAACGAGACAGCCCGGTATCGCCACGGA
AGATCTCGCCGGGGCGACAGCTTACCATCGAGGTCAGTCTCAACAGGGCA
GATCATCATCCTACAGCAAGCAGTACAGTGCTATTTTTTAAGAAGACGCG
AAGAAAAGAGACTGGTGAAGAAAAATATTTCAAAAAGTTCTTTATATATA
TGTTCTCACAACAAGTATCAGGTACCGGTATCCTTTTGGGGGTTGAATGG
TTGCTTCAGATGTTTTCCGTCCTGCACTGTCTGTGCAGGGGGGACCAACA
AAAAAAAAGTTCGACTGACTTCTATTCTCGTGGTTGCGGGGTGCGATATA
CACATTCGAGCCGGTGCTCTGGAATCGGCGCGATATGTATTTACTATGCC
GCGTGGGCGATTTCAGAGCATGAAGCGCACGCATGCGCGCTTGTCAATAT
TATTAGCATAATAATATGCGCGTACGATGCCTTCCCACTATTAATAGGAA
ATCTGCTCCCAAATAAAATAAAAGCCTCGGCTCGGCACATCCCCTACCGC
CCGCTAATTGAATCCAAGTTGGGTATACCCCCACAGGTGCATGCGCACAC
CGTTTGACGCGAGAGGAAAGATTCTAATATGTACAGTAGTATTATACTCG
TAGTAGTATTCGGTATTTCTACTGCTGTGTACGAGTACGGCTACATAATA
TGAGAGGTATCTATCTACCCAGTATTATTTATATACATAACAGTACAACA
GTACTCACAGCAGTGTAGGCTACCGGACGAACTTATACTTACAGTATATC
GTATTATGTATTTTCACACATATACTACAGTTGTAGCAAGAGAATGGATC
AACCGGGCAAGGCTGCCAACCCTGCTCGTGGTCAGCAGAACAGGGAAAAG
AATATGGGAATATTCCCCTGTCCGCGTTCGTGCCTGAGAATTTGGTCTCG
CGAGACGGTTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCAGCATCTCCA
TGCTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGC
GACGGCGTTCATATATTTAGGGTATGGCCATTTGGCCCACCGGTGGGATA
TTCTCTTGTTTACCCCCCCACCTGGATCTCGCGTCAGAAGACTTGATTGG
TCACAGTACATGCATGGGTGTGTTGGGGTTAGGGTTAGCTATTATCGGGT
CTATCGTGCAGCCCAAACGGTCCCGTCTACGTGCGATGTTACGGCCGGTG
GGGTGGTTGGTGTTTTCTGGTATGTATGGCTATTTGCCCTTACATACCAG
AAAGCACCAACCACCCCACCGGCCGTAACATCGCGTAGACAGGACCGTTT
GGGCTGCACGAATGACCCCACGATAGCCCTGCAACGCGCCAACACACTCG
TGCATGTATTGTGACCAACCGTGTCTTCTGACGCGAGATCCAGATGGTGG
GGTAAATTTGGGTATGGCCCACCGGTGGGGCAAATAGCCGTTCCCATATA
TTTATATTAAACCGCCATACGCCATCGGGTAAGTCCCGAGTTTATCGGGT
CACGCAATTGTGCACCGATGGCGTTCACTGCCGAAAGTCCGCCGATACAG
GGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTGCCTTAGCAGGTCA
CCATGGACTATGACCAATTAATACATGCCTCTCTTTTTTCCACACCCACT
ATGCTATAATTGGTATGAAGTGGGCATGTTGAAAGTACCGGCGATACTTT
TGCGAAGTACCAAGTATACTACTCTTACAAAGTATCTACTACCGGGTACA
TGTTACAGATACCTGTAGTTCGATCCTTGCAGCCAAAAGCTTGCTGTACT
CGAATACTCTGTTCAGCAGATGTATATGTACCTTGCAGCCTTTTTGAATA
ACTTATAGACGAGAGTAGACGTGGCAGCACGCTCCAGGCCCTCTGCTTTG
CTTTGCTCTTACCATGTTGTAGTATAGGAGCACTGTACCGCAGTATAGCT
TTTTGCTGTTTGTTCGTTTATGATCCCTCTCCTCGTACGAGAGCGTTCCG
CGTTTACTCAAACCGACAAAACAGAAAGAACCTAGTAATAGTATACAACT
CGAGAAAATAAAAAACGGCTTGACGGTATTTAGAGCTGGTTTTTCGTTAA
ATACTTTACTTTTCAGCGAATAAACATAGTCTACATGAATAACTGTCGCT
CATCATCATCGAGGAGGTGCAGCGACGACCGGCAGCACCAACCACCGGAG
ATTCGATTCCGCTTGGGTCAGCTCCAACACTGGAGGAGACAAGACGAGCA
GTCCGGGGATGCACAACTGGAAAGCGCCTGGCCCTGACTCCCTCGTGGTA
GAGCTACTCAAGATCGATGAACCCGCCGAGCCCATCGTTCTCGAACGTTT
CCATGCCATTCTTGTCGAAGTGTGGAACGGAGGGGAAGTCCCGCAGCAGT
GGAAAGACGCCACCATCAAGGTGCTCTACAAGAAGTCTGACCGATCCAAC
TGTAATAACTACAGGGGGATCTCACTTCTCTCGCACGCGGGCAAAGTGCT
CCTGAAGATCGTAGCCAACCGCCTCAGTGACTACTGCGAAGCCCACGGCA
TTCTACCAGACGAACAGTACGGCTTCCGACCGGAACGATCCACCGTAGAC
ATGCTGTTCGTAGTGCGTCGACTCCAGGAACTGGCGCGACGGCGGAGAAT
ACCGCTGTATATGTGCTTCGTTGACCTCCAGAAGGCTTACGATTCGGTCG
ACCGAGAACTGTTGTGGAAAGTGCTGGCCCGAGCCGGTGTCCCGGAGGAG
ATGATCGCAGTTATCCGCCAGTTCCATGACGGCATGCAGGCTCAGGTGCG
CATGGACGACGGGGAACTCTCGGACTGGTTCGACGTAACGCAGGGACTGA
GGCAAGGATGTGTGCTATCTCCGCTACTGTTCAACATTTTCTTTGCAGCG
GCGATCGAGGTCGTTCTTGTGCGTTTCAGCGAGGACGACACCGTTCTAAA
GGATATGGTATACCTCGAAGAGGAGGATGGAGTGGGGGCGGGGACACCGT
TAGAACGCGCGCGGAGGGCGGTATGGGGAATGCTCTATGCCGACGACGCC
GGCGTCGTATCGAGATCCCAACAAGGGTTGACGAGGATGATGACCATAAT
CGTGGAAGTGCTTGGGTCATTCGGCCTGACTGTGTCGGAGAAGAAGACAG
AGACTCTCTTGATGCGGGCACCGGAGAAGCAGCCGACGAAAGGGAGAACG
CCACCACCACCACTGGTCATCGAAGCAGCGGGACAGAAGTACGCCCAAAC
CGCCCAGTTCCGATACTTGGGCGGCCTTGTCAACGAGGATGGCGAGCTCA
CGCAGGAGATAAACCACCGGAGCAGAGCAGCGTGGGCATGCATCAGGAGG
TTCTCCCGGGAGCTCTTCGACAGGCCGAGAGCACCGTGGAGACTTAAGGT
CCGACTGTTGAGAGCGGAGGCGATGGAGGCCCTACTCTACGGATGCATGA
CGTGGGCCCCCGCCGCGACCACTACCGGTTGCTGAGGCGGACACACCACC
GGCTACTCCTGCGAGTCATCGGGTACCGCCGCGAACGCGGCACCTATCGA
CAACTCTCGTATGCTCAGGCCCTCAAGAAGACTGGGTGCCAAAGCGTGGA
AGCTACCATCCGACAACGGCGACTTCTGTTCGCGGGAGCCATGGCCAGAC
AACCCGCCGGGCGCCTCCCAAAGCGGCTGATGGAAGGGAAATTAGTTGGG
GGAAGACCCGGGCAAGGGACGCCCGGAGCAGAACTGGATGGATTGTCTCA
AGGACGACTTCCAAGCGTTTGGAGCCACGGACGGCTCTACGGTGGACAAC
CGGCTCACATTCGGAGTTGACAGAGCCGTATGGACCCTTGCGGCGAAGAT
GGACGATGGGGCGCCGTGGCACAGGGGTGTTGCAGGGAGCGGAAAAGTTC
ATGGCCTCCTGGCACAAGGAAGAAGAGGAGGCCAGCCGACGACGTGCTGC
TAAAAGAGATGCTCGGGATCTTGAGCCCCCACACATTTGTAGGTATGTGT
AGGGAATGGCCTGGCCGGTGCAAACCCGGCGGCGAATACACCCCGGCCTA
GTAGGGGTACAAGGATAGAATCAAGTGTGTCTTGGTTGGTGATCCTTGAT
TCTTTTCGTTTGTTTTAATTTTTGCTTGGCCTCGCGCGTCGAGTGGGAGC
GATGGGCTCTATCTATCCCCTTTTTTTTTATTGTTTTATTATTTTATTTT
ATTTTATTTTTTTTCGGAGGGAGGGGGTTCCTATTATCGCCTGTGTGTTG
ACTCCTCTGGGTCCTTTTATTTCTCGTTTCATTTCTCATAATATATACCC
TTTTGGGGGGGAAGTTAGCCTGTGACCACGGAAGGCGTTCGCTTCAGTTG
GACCAGTACGGATGTTGGAAGGTACTGAGCAGAGAGCGGAACGGTTTTTT
AATGTGAAGACAACAACAACAACAACAACAGAAGGTCAAGGTGAGATGCT
TTCATATTTTTCTTTTAAACAACTGGTTGGGAAAGGAATCAGCCCTCCCA
GGAATACCAAATAAAAACTCCCATACTGTACTACAATGCAATTCGCTAGA
ACCATGAGGACAACAAGAAGACGTGGGTGGTAAAACCAAAACGTCCCCAC
CCCCACATACATATATATATATATATATATATATATTTAACATGGTTTAT
TTTTGCTCATTAGATTTTCTTCGTTCAAACGTCGCACTGCTGCACACCAC
GTGCACAGCAGCAGCACAGCCTCTGTTACTTGCAGCCTTCTTTTTTTATC
ACGTTGATTGCTTCTTCGGAGTAACATACATAAAGAATGAATGAATGCTG
CGACTCTTTCGCGCCTCTCCTGCTGCTCCCGTGGGCGCCACACCATCACT
GCTGTATACTCTATAGCGGGCACCAGCGAACAGGTCCCGCAATCATGGGC
AGCAGCAGCAGCAGCAGCAGCAACAGCCGCAGCAGCGATGGTAGCGACGA
CAACGGGATCCTCTCGACGTCATTCGACGCTGACACTCCCCCGCGGAGGA
GCGTTGTCGTCATCAGCAGCCGGGGGTGAAGCATGGGCACCACCAGGTCG
CTTCGCTGCCACGACAGGAGCACGTGCTAGTGGCGTCATCGAAGAAGACT
GCTGGCTCGAGGCAACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7311:11038..16504-

>mRNA_F-serratus_M_contig7311.18543.1 ID=mRNA_F-serratus_M_contig7311.18543.1|Name=mRNA_F-serratus_M_contig7311.18543.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig7311:11038..16504- (Fucus serratus male)
ATGAACAAGCGAGCACGGTCGGAGCAGAGCTCGGACAGCGGCTCGGCCTC
GAGCGTGGATCCAAGCGTCGACGTCGTCGCTGACCCATCCTCATCATCCT
CCAGACGTGGGAGTATTTCCCGGAGTAGTGCCGCGGCCGCGCGTGCCCGG
GCTCGGGAGCGAAGGAGCTCGTGCCCCGCGGCAACGAGACAGCCCGGTAT
CGCCACGGAAGATCTCGCCGGGGCGACAGCTTACCATCGAGATGAACAAG
CGAGCACGGTCGGAGCAGAGCTCGGACAGCGGCTCGGCCTCGAGCGTGGA
TCCAAGCGTCGACGTCGTCGCTGACCCATCCTCATCATCCTCCAGACGTG
GGAGTATTTCCCGGAGTAGTGCCGCGGCCGCGCGTGCCCGGGCTCGGGAG
CGAAGGAGCTCGTGCCCCGCGGCAACGAGACAGCCCGGTATCGCCACGGA
AGATCTCGCCGGGGCGACAGCTTACCATCGAGCGGGCACCAGCGAACAGG
TCCCGCAATCATGGGCAGCAGCAGCAGCAGCAGCAGCAACAGCCGCAGCA
GCGATGGTAGCGACGACAACGGGATCCTCTCGACGTCATTCGACGCTGAC
ACTCCCCCGCGGAGGAGCGTTGTCGTCATCAGCAGCCGGGGGTGAAGCAT
GGGCACCACCAGGTCGCTTCGCTGCCACGACAGGAGCACGTGCTAGTGGC
GTCATCGAAGAAGACTGCTGGCTCGAGGCAACACGGGCACCAGCGAACAG
GTCCCGCAATCATGGGCAGCAGCAGCAGCAGCAGCAGCAACAGCCGCAGC
AGCGATGGTAGCGACGACAACGGGATCCTCTCGACGTCATTCGACGCTGA
CACTCCCCCGCGGAGGAGCGTTGTCGTCATCAGCAGCCGGGGGTGAAGCA
TGGGCACCACCAGGTCGCTTCGCTGCCACGACAGGAGCACGTGCTAGTGG
CGTCATCGAAGAAGACTGCTGGCTCGAGGCAACA
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