mRNA_F-serratus_M_contig1242.1855.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1242.1855.1
Unique NamemRNA_F-serratus_M_contig1242.1855.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1242.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1242contigF-serratus_M_contig1242:145414..147542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size546
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1242.1855.1prot_F-serratus_M_contig1242.1855.1Fucus serratus malepolypeptideF-serratus_M_contig1242 145526..147542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.7827675-UTR-F-serratus_M_contig1242:145413..1455251622929169.7827675-UTR-F-serratus_M_contig1242:145413..145525Fucus serratus maleUTRF-serratus_M_contig1242 145414..145525 +
1690962734.1550097-UTR-F-serratus_M_contig1242:145413..1455251690962734.1550097-UTR-F-serratus_M_contig1242:145413..145525Fucus serratus maleUTRF-serratus_M_contig1242 145414..145525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.7996786-CDS-F-serratus_M_contig1242:145525..1459171622929169.7996786-CDS-F-serratus_M_contig1242:145525..145917Fucus serratus maleCDSF-serratus_M_contig1242 145526..145917 +
1690962734.1704097-CDS-F-serratus_M_contig1242:145525..1459171690962734.1704097-CDS-F-serratus_M_contig1242:145525..145917Fucus serratus maleCDSF-serratus_M_contig1242 145526..145917 +
1622929169.81293-CDS-F-serratus_M_contig1242:147502..1475421622929169.81293-CDS-F-serratus_M_contig1242:147502..147542Fucus serratus maleCDSF-serratus_M_contig1242 147503..147542 +
1690962734.1781485-CDS-F-serratus_M_contig1242:147502..1475421690962734.1781485-CDS-F-serratus_M_contig1242:147502..147542Fucus serratus maleCDSF-serratus_M_contig1242 147503..147542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1242.1855.1

>prot_F-serratus_M_contig1242.1855.1 ID=prot_F-serratus_M_contig1242.1855.1|Name=mRNA_F-serratus_M_contig1242.1855.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MDGIAAGVTEGGADCGAASFVRAPSKVKGQFPRYDETTEPEVLAEAASAN
TKVNAVDDMAFLRLDGAVAFSSSCEDDDDVDEDEDDDERSYNTHPDTEGI
GPRGSTSVALQGSPVDENTRQLSRRKRSGDRTRRGGWTREEDNI
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mRNA from alignment at F-serratus_M_contig1242:145414..147542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1242.1855.1 ID=mRNA_F-serratus_M_contig1242.1855.1|Name=mRNA_F-serratus_M_contig1242.1855.1|organism=Fucus serratus male|type=mRNA|length=2129bp|location=Sequence derived from alignment at F-serratus_M_contig1242:145414..147542+ (Fucus serratus male)
GTGGATCTTGACTTGATCCAGAGCGTGGACCAAAACGTTCGAGAGACGAC
GCAGTCAACCAAATCAAAGGTAACGAGATACACTACATGAGCCAAGTCCT
GCGTTTCTAGCGATGGACGGTATTGCTGCGGGGGTCACGGAAGGAGGTGC
CGATTGCGGCGCAGCTTCTTTCGTTCGAGCTCCATCAAAGGTTAAGGGGC
AGTTTCCACGCTACGACGAGACTACCGAGCCCGAGGTTCTTGCTGAAGCC
GCAAGTGCCAACACAAAGGTCAACGCAGTGGACGACATGGCGTTCTTAAG
GCTTGATGGTGCTGTTGCTTTCTCGTCGTCGTGCGAAGATGATGATGATG
TAGATGAGGATGAGGATGATGATGAGCGATCCTACAACACGCACCCTGAT
ACCGAGGGCATTGGGCCTCGGGGATCTACGAGTGTCGCTCTCCAGGGATC
ACCCGTGGACGAAAATACACGACAGCTTAGTAGGAGGAAAAGATCTGGCG
ACAGGTATGTTATTCTCCTTATTAATAATTAAAACATGAACATTGCTGAG
GCACGAAGACATCGTCGAGGGCGGAGGTGCTTTGTTTTATAGCCCGGTAT
AAAACGGACGTGACAAAACTGTTTATAGAGCTTTCTGCTGCAAACAGTGG
TCGGTGGTGATGACGACATAACACGCACTAAAGACTACTGGTATAGACTA
GAGCATGATGCAGTAGTAATGTAGTCTAGACGTCTTCTTTACTTACTTGT
AGATGTGTACCAGCTGCTGATGCTGCTGCTCTTGTAGAAGACCGTCTGCT
GTAAGCGGTGCAGGATGTTGTAATACGATGTAGCCCTCAGTTTACAGTAA
GTACAGGAATACTCTCGTGTTCTGTGCCAGGTATCAAATAGTATTACGTA
CTTCCGGTTGCTTCCGGTGCTTACTACAACCACCGTGTAATGTGTGCAAA
TACAGTTGTTGCTGAATTATAAACCGTGTTAGATTGCGGTCAGAACGTTG
TATGTGTAATCACAACAAAAAGCACCGGTAGCATTTTACGCACTGGTATA
ATCGATGTATAAACTTGCGGTACTAAACTGTTGTGAGGTACAACAGTGTA
GAGCAGGTATCATAGCCACTCGTATCTGTATGCTGGGTACTGTATGCAAC
CTGATGTTAAAGTTATAGAGCGGGTAGGTCCGTGAACAAACATATGTTTA
TCAATGTAATACGTACTGTACGTACTTCGAAGACCACCATAATTTAATGT
CATCGACTAACTGGGCATCCTGCCAGTATGGACGCAATCTAATCCGTACC
GTCCCCCGGTACTTTCAACATGCCCCCTTCATGCATGCCAATAGTGGGTG
TGGGAAAGAGAGGCGCATTTTAATTGGTCCAAGGTGACCTGCCAAGGTAG
CATTCGTTCGGAAGTACCTTGAGGTTAGGTTTACTGGACTTGTGCCGGCA
GACCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGAAAAACT
CGGGACTGATCCGATGGCGTATGGCGGTTTTTAAATAAATAAATGGACGC
CGCCGCGGAACTCGAGAGAAATCCCGTAAGTAAGCACCAGATTCAGCCTT
GGTACAGAGATGAGCAGGCTGACGCGGGACGCGACTGCCGGAGCCGTCTC
GCGAGATCAATTCTCAGGCGCGAACGCGGACGGGGAAAAAACATTTTCCC
TGTTAAGCTGACCACGAGCAGGACTGGCAACCTTACCCGGTCGATCCATA
CTCTTGCTATATGTGTGGCCTTACGAGTGAAGTATTTCACAGTAGTACTG
TCTGGTTCCCCATAATATCCCAAACCGGGCAATAACTGAATGAAGCTGCG
TCGAGCGGTCACGTCCCGAACCCAACCCCAAATAATGCCAGTAATCCGTC
GATATTACATTTCGTGGTTCATTTTGAAAGACGACACGTGGTCAACTGAA
TTGCCTCTACTCTACAGTGCCGAGCTGAGGACTCCAACTGGTCGCCATTG
ATCTGGCGTGGTGTCATGTGCTTCCTGCGTTGCCTTGTTGTGTGCTATGT
TCGCTGCGGGACATCGACGGCGTTATGGCAACGAACCAGAACCCGCCGAG
GAGGGTGGACCCGCGAAGAGGACAACATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1242:145414..147542+

>mRNA_F-serratus_M_contig1242.1855.1 ID=mRNA_F-serratus_M_contig1242.1855.1|Name=mRNA_F-serratus_M_contig1242.1855.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig1242:145414..147542+ (Fucus serratus male)
ATGGACGGTATTGCTGCGGGGGTCACGGAAGGAGGTGCCGATTGCGGCGC
AGCTTCTTTCGTTCGAGCTCCATCAAAGGTTAAGGGGCAGTTTCCACGCT
ACGACGAGACTACCGAGCCCGAGGTTCTTGCTGAAGCCGCAAGTGCCAAC
ACAAAGGTCAACGCAGTGGACGACATGGCGTTCTTAAGGCTTGATGGTGC
TGTTGCTTTCTCGTCGTCGTGCGAAGATGATGATGATGTAGATGAGGATG
AGGATGATGATGAGCGATCCTACAACACGCACCCTGATACCGAGGGCATT
GGGCCTCGGGGATCTACGAGTGTCGCTCTCCAGGGATCACCCGTGGACGA
AAATACACGACAGCTTAGTAGGAGGAAAAGATCTGGCGACAGATGGACGG
TATTGCTGCGGGGGTCACGGAAGGAGGTGCCGATTGCGGCGCAGCTTCTT
TCGTTCGAGCTCCATCAAAGGTTAAGGGGCAGTTTCCACGCTACGACGAG
ACTACCGAGCCCGAGGTTCTTGCTGAAGCCGCAAGTGCCAACACAAAGGT
CAACGCAGTGGACGACATGGCGTTCTTAAGGCTTGATGGTGCTGTTGCTT
TCTCGTCGTCGTGCGAAGATGATGATGATGTAGATGAGGATGAGGATGAT
GATGAGCGATCCTACAACACGCACCCTGATACCGAGGGCATTGGGCCTCG
GGGATCTACGAGTGTCGCTCTCCAGGGATCACCCGTGGACGAAAATACAC
GACAGCTTAGTAGGAGGAAAAGATCTGGCGACAGAACCCGCCGAGGAGGG
TGGACCCGCGAAGAGGACAACATCAACCCGCCGAGGAGGGTGGACCCGCG
AAGAGGACAACATC
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