mRNA_F-serratus_M_contig73.18525.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig73.18525.1
Unique NamemRNA_F-serratus_M_contig73.18525.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig73.18525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig73contigF-serratus_M_contig73:458904..465752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig73.18525.1prot_F-serratus_M_contig73.18525.1Fucus serratus malepolypeptideF-serratus_M_contig73 459067..465752 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932216.3264644-UTR-F-serratus_M_contig73:458903..4590661622932216.3264644-UTR-F-serratus_M_contig73:458903..459066Fucus serratus maleUTRF-serratus_M_contig73 458904..459066 +
1690964202.7896154-UTR-F-serratus_M_contig73:458903..4590661690964202.7896154-UTR-F-serratus_M_contig73:458903..459066Fucus serratus maleUTRF-serratus_M_contig73 458904..459066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932216.3439548-CDS-F-serratus_M_contig73:459066..4592291622932216.3439548-CDS-F-serratus_M_contig73:459066..459229Fucus serratus maleCDSF-serratus_M_contig73 459067..459229 +
1690964202.802791-CDS-F-serratus_M_contig73:459066..4592291690964202.802791-CDS-F-serratus_M_contig73:459066..459229Fucus serratus maleCDSF-serratus_M_contig73 459067..459229 +
1622932216.3724194-CDS-F-serratus_M_contig73:465621..4657521622932216.3724194-CDS-F-serratus_M_contig73:465621..465752Fucus serratus maleCDSF-serratus_M_contig73 465622..465752 +
1690964202.8120522-CDS-F-serratus_M_contig73:465621..4657521690964202.8120522-CDS-F-serratus_M_contig73:465621..465752Fucus serratus maleCDSF-serratus_M_contig73 465622..465752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig73.18525.1

>prot_F-serratus_M_contig73.18525.1 ID=prot_F-serratus_M_contig73.18525.1|Name=mRNA_F-serratus_M_contig73.18525.1|organism=Fucus serratus male|type=polypeptide|length=98bp
MDGAPILLLGFSNTKQQLHHQEDQPKQKRRRRLSKSSLRYIGILAVATLS
TSASCCAAAPGTLAFAPSAGGPLLKRSAFSWTSSSPYLSCDHANRRLP
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mRNA from alignment at F-serratus_M_contig73:458904..465752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig73.18525.1 ID=mRNA_F-serratus_M_contig73.18525.1|Name=mRNA_F-serratus_M_contig73.18525.1|organism=Fucus serratus male|type=mRNA|length=6849bp|location=Sequence derived from alignment at F-serratus_M_contig73:458904..465752+ (Fucus serratus male)
CGCTGTCGATGGCTCTGACGGTGTCCTGCTGGGTCAGTGGTTGATAGCAC
AGGTGTCCACATCATCTAGCTACCGTTCGGCTGCAGCGCATCGTTGATTT
TCACGCGAGGAGTTGTGGCGGTACGCATCAGTGGGCGAGGGTTGCCGAGA
AGCTGTGGTTAACATGGACGGGGCTCCCATCCTACTGCTTGGTTTCTCCA
ACACCAAGCAGCAGCTGCATCATCAGGAAGATCAACCAAAGCAGAAGCGT
CGTCGTCGATTATCCAAAAGCTCTTTGAGATACATCGGTATTTTGGCGGT
GGCAACGCTGTCGACCAGCGCCTCATGTGAGTTTTTTTCATTCTTGAGTC
TGACCGTTCCGTGATTTCTGTTAGCAGAGTACTGTTGTGCATCCTTCGTT
TTTTCTCTCGATATTGGACCTTTCCAAGCACGTTTCGCGGTCTTCCTTCG
AGAGAGGTTCGGGTTCGTTGAGGTGCATGTCGAGGAGAAGAGAGCTAATT
GTGGAGGGATTACGATGCATGCAGCCGATGAGTGGGGGAAGCGCTGCAGA
TCAATCTGCGTGCCCTGTCATTTTGTGCTTTGTGCATTACTTTTTCGCGG
GATGAGTGAGCAGCTGTCGTTTGGTTTCCCAAATCAAGGCGCGGCACGAC
CATCATCGAAGCGAGGATTTGAGGCTTTTCTACGAATACACTTTGATATC
CGGAGCCCTGTGCCCATGATGAATCAGTTACTTGCTGTCAATGAAGCAAG
CAGTGTACGAGCACTTGTCTGTGCAGTACGGATTTGGTTGCCAATCCGTC
TTGTGGTCAGCTGAACAGGAAACAGTTTGTTCCCTCTCTGTCCCCGTTCG
CGCCTGATGATTTGGTCTCCGCGCTCAGGCCGAAACTGATGCTTACTCAC
GGGATTGCTTCCGCTTTCCTCGACAGCGTCCACAATACCTTCAACCACCA
TCACGACGGCGTCCACAGTACACCGTTTCTGTTTCGCCTCTGCCAACAGA
GAGACTCCGGACGTTTCCTCTTCATACTTTTCCCCAGATCTTCCCATTTA
AATACAAAATAGATGACATTTATTTTGCTGGATGGTATGAAAACTTGGCG
CCCAAAACAGTACCTTTCGTATTTTGACCCTACAAGCTGGGCTGGCCAAG
AAACTGACTCATGTTCGTTCATGTCTCGCTCTGCCGTTTCTACGAATTAA
AGCTTGAAATTTGGAGGCTGCTCCTATACGGCAAAAAGGGAAGCGCAGGC
GCCGGAATTTTTCGCATCCGAGTTGATTTTGGTAAACAATGACCAAATGG
CGGCGTAGTGGAGGATATTTCCTATACTAAAATCAGTATGAAAAAAGTGT
CACGGATCAAGCTGAAATTTGGTGTACACGTACCCAGGAGAACCGCAAGA
GCGTGGGTGGTAGTTACAAGGCTCGCCTCGTTTTCTATCAAGAGTTGCGG
CCTCGTAAAGATTCCGATACAAAACACAAGTGAACTGAGGAAATGTGGGG
GTATCGCGATTTGCCACGCTGGTTTTAGGTACGATTTTTCACCTGAACTT
TCGACACGTGATTTAGACCGCTCTTGCGGAGAGGACCACCCCTGCACATT
TTTTTTTTTTTTTTTTTCCCATAATTTCGTCGCGAAACAAATATTCCCAC
ATCTACTTATATCCGGCTATCATACCATAACTTACGAAAAAAAACTAAAA
CCAAAATGTGCAGGGGTGGTCCTCTCCGCAAGAGCGGTCTAAATCACGTG
TCAAAATTTCTGGTGAAAAATCGTAAAAACCGCGTGGCAAATCCCATTCC
GCCATGTGTACAGCGTCTTGGCCAGCCCAGCCTGTAGATCAGTCCGGCGA
ACAACTCAACTGACTTTTGGCGTCACAACCTCTAGTAGATCAAAACATAC
TCGGCGTGTCTTCTAGGGGATAAAGGATGGGTGTGAGCTGCGATTTAGGT
GCTTAAAGAAAATCAGAACAGCACCTAGACCTTTTGAGCATCCCCCGGTT
AGAGGGGAAACACCCCAACCCTCATGGCAAAATTCCACTCTTTTCCGTAT
TTGTACGCACCGGGTCTAGCAGATTAATACTGGTACTAGATTACTATATA
CTTCCAAACTTTCTGGTCGGGGTTCTCAATGGAAAGGCAGCAGAATGGAT
TTTAACGACATGTCCGGTCCAGTAGGACGATACACCATTATAGAAGAGTA
AATTTGTTTGACTCGGTCTGTCTTCCGACTTTAGTCACAGCTATACAGCC
GTGGGTAAAATCTAGCCCGTTTCCTTACACCACTCCAGATTCAATCTGTT
GAACGTGATAACGAACAGCACGTGCGATGACCTTGTCAGAGGCGTGGCAA
CGTTCGCACCGTGTGAATTGTTCCGCAACCAGCACTGCCTTACTGCGATA
GGATTCCTGAAATCGATGCTCCTCTGTTTGGAGAGGAGGCGCGTACCACG
ACTGCCTGTAGTGTAGCGACTACGCTGGAGGAGGATACACACCGACGTAC
TTGTACTAAAGTTACCCCCGCGTGCTAAGAATACTGCAGATTTTCCCTTC
ATTTATTTTATACTTTTCATTCTCTTGGAAGGAAAAGCTGAACTCATCTA
TGATAGACCTTCTGAGCTTCCCAGTCAGGGGGAAAATGTCAAAACGTTTA
GGTGGGATCATCGTACCGGGGCAGGTTTGTAGCGTCATCGACCCTTGCAC
AATAAGGGCTTGTAGTCTAGAACACGAGCTGTTACAACATTGTAATTGGT
GAAGAAAAATGTTTTACAAGTCCGCAGGGACATTCTACTGTATAACATTT
GTTGTTTCGCAGTCTAAAAATACAACCTCTTCATGGCATTACTGTCCATT
CAAATTAATCACCATGCAGGGACACCAAAACACATCAATTACAAAAGGCA
CGATAAGTCGGGATACGGATCAATTTGTTACATTGGGTCTGAGATCGGAT
GGGTGTCAATGAAGGAAGTCTGCAAGTTGAAGATCTAGTCTATAGAGGTA
ATTGGAAAATTTACCTATACTAATACTATACGGCACATACCGGTACTTGC
CAGTAGCGCTTGTGTGTGTAGTTCACACTATATCTTACCTGGTACATATT
TATTTGTGACAGCATTAGTAAGAGATAGGAAGAGATCGTTCGTAGTACAT
ACACCAGTTTTACAGGGGTAAGGCCGTTTCTTATGCTGGCGTTTTTGCCG
AGCGGAAATTGCCCATTTCCGCTCGAGTATTTCTCCGTTGGAGATTTTCG
CTTCGCATGTCTTACAATTTTTTTCGTTAGAGTTATGGGAATGTCGAAGG
CGTGTGCTCAAAGGACTGTCAACAGTTTTTGAAAAGATGGCGCGTCCATA
CGAACGCTGGCGTTACCAATTTCCCCACACCGAACGACAGCGTACACCTG
CTGCTAGACCGCGtacaTACAACTGACCACACTGAGTTTGGGAGCAAAAT
CTTGTAGAAAAATCTTACATTTTTCGACAAGATTTTCGTGCGAAAATCTT
GCCGTCGAAGATTTCGTCACGCTCATTATGGGGAAAAAATCTTGTTGATG
GGGAAATAATCTTGTTGATGGGGAAATGTTTAGTTTTGGCATTGTTTCGA
TAAGCTTGTAGATGCTCTTCTATGCGGTAGAGATACAAAATTCAAATTGC
CGAAGGCTGGAAATAGCAACGTATTTTTTCTGAATGAGAAGATGAAGTTT
TCAAGAGGAGACAAAGCTGTAGCTCTACAGTAGTACCACTACCAGTAGAG
CATAGACACCATCGTATGTGGAGGTTTTCATCCTAGTCATTGTCGGTAGA
TGAACACAAACACAGCCCGGCAAGAATGCGCCACTCTAATAATTTTTGTA
AACTACCTACAGAACTACAGGCAAACGCCGCACCGATGTTGTGGTTTACT
GTCTCCAAAATTCCACGACTTTTAAACTCGCTCCACCGGACAAGAGAGGT
TCACTCGGATTAGAATGATTAGAAGGCCTATTGTATCAAACACCTGGCAC
TTTATCTCTACAAACCCTTCTCGAAGCGTTGATTGGTCCATAGTGACGGG
AGCAAGCGCTTCCTGTTTGGGTGAACAATACTGAGTATAGGGTAGGGACC
TAGTCTACTGCTGTTGTACTTGCACCAGAAATTAGACGAAAACAACAGTA
AATCAACAAGTACATACTGCTGTACAACAGTAGTATACCTGGTACAGTAT
ACAGTACATGTAGTCATGTGGCATCAAACTCTGTACTTTTTGCAGAATCT
GATGATGATGCTACTTTTCGCCAACAAGGAGAGGAGCTCCACGGAGAGAC
GAATGGAAGGCGGGATCACCGACGAAACGTCTATATACCCCCCATACCCC
CCTTGAAGTGTTAACGCTTGGGCTTTGCTGCTCGAGGACAACCACCGTCA
TGGGTACACACGGACTTGACCGCTTCCACGGTGAATGTGATAAGATGTCA
CACGAAACACGGAAATTGGCGCGAAGTCTCTATTATACTGCCCGTCCTCT
GGCCATCAAAAATCCGTTTCTGCTGATGACAAATCAAAACACAACAAACC
CAGCCCTTCATTGCCAGAACCAACCTCCTGACTCTGGCTCTGTACGTGAG
TCACAGCGGCAGCAGCTTTGGCTATCGCTGCATCGCAGTCACCGCCATAC
ATGCTATGTGCGTTTTTGTTTGAAGTGTTTTACGATTTCCCGTGGAGACA
AGCGGCGCAATCGATATGTCTCGCCGCTCCCAGATTTTCGTGGAAGCTGC
CATTTGAAAATCTCGGGCCAAGATTTTGCCAAGAGGGCACATTTTTCAGG
CAACATTTGTCCCCATAAAAAGTGAACAAAATCTTGTTGGGAAAATCTTG
GGTAAGATCAAGATTTTTGTACTTTTTTTGTACAAGATTTTGTTCCCATA
AGAACCGCCCTCAGAAGACAAATATTCAACGCACGATGATTCAATCTCTC
GTCGACGCTTATCCGCTGACAGAAAGAAATAATGATACCGTTAACGATGT
TGGTGTCATTGAGCCTGCCTTCCCCAAATATGTACTTGTGTGTGTTGTAT
CACACACCAGCAGTAGTACAACATCAGAAAGGTCCCTCCCTCCCTACCTG
ATCCATAAAGCGCATGGGCGATGTGTCTGTGCTTCGTACACAACAGTCAA
ACCCAGAAACTGCTGTATTTTTGTGTCATTAATCTACCTTCGTTTCGATC
AACAGCCAATACTATATTGACGCGGGACGGGACTGCCGAACCCGTCTCGC
GAGACGAAATTCTCAGGCGCGAATGGGGACAGGGAAATATTCATTTTCCC
TGTTCAGCTGACCACGAGCAGGATTGGCAACTTTACCCGGTTGATCCATA
CTCTTGCTATATGTGATGACCATACATACACACATACGTTGTATTGTGTG
GTTTGTGCGGTGCAATCAGTCTCAAAAAAAAATtcCGCGCAGCGATTTCC
GCCCGCGAATCCGGGCGGAAATTATTCCAATTTCCGTCCGGATTCTCGGC
GATAATCGTTGGGCGGAAATTTCCGATCGGAAATTGCCTATTTCCGCCAG
CGTAAGACATGGATTGTTTCTCCCGAGCGGAAATAGGCAATTTCCGATCG
AAAAAACGCCCGCATAAGAAACGGTTTCAAGACGTACAAAGCATAAGAGA
AAGAGTTTTGTTTTTTGGGTTGTGGTGCATACTTTATAGGGACAATACAG
GACAAAACAGTTTAGCAGTGATAAGTTGCGATAATACCTACCTTACATTC
AATGTGCACACCCGACCCTCGTTATTATTGAAGAGGTTTAGCTATGTTCT
GATTTTCTCTAGTGTCATCAATATAGACTACAAATACACAACCTCTTCAT
AGCATTTAAATGGGTTCCCCAATGGTGGCGACCTTGGTTCAACAGTACGA
TGTCGGGGAGGTTCTTGTTGTTCCGGTCGCTTTGGTGGTCCAGTTGGTAA
CCTCGAAAACCTTCTGACGGTGGGACGTGAGTTCGAATCCGGTGTCGTCC
CAAGAACTGGGTTTTTTCCTCACAATATATATATATGTATATATATATGC
CCAACAAGTGGAAAACGATGAAGTCGTAGTACACAAAAGTCGATTTCACG
GCCGACGAGGGTAAAGAACGACTGAATCCTTCTCGCAAGAAAAATTAAGG
AAGCACCGCACAAGAAAGGTGGAAAAATCTCGTGTGACCTTCCTCCTGTG
TGACTCCGGCTGGTACGTCCACAAACCTGACGTCCAGAATAAATGAGATG
ACAACACATACATACACACACACACACAGAATGTAGGGAAACATCGACGA
AGGCAGCAGCAGACGGGCCCCCAGCCCCCAGCCCGAAAAACGCCTTCACG
TTTTTTTATACCGTCAACTTATCCGCTCGTCAAGAAAAACCTTAACGGTG
TCGGTGTGAGTTGGAACGGGGGGGCAATTACAATCCGACCCTTCTCAGGA
GAGAGAGAGGCTTTCCAAGGAGTTTTATCACCTGTGCCGACAGTTTTATG
CGCCCTCTATTAACCGACCGGTATACATTTGACCCACTTCTAGTCGCTGG
GGTCTCCCTGCCCCCAAGTTGTGGCTCGTTTCGATATGGGCGCGGCATGT
GTCCTCGCGGCCTTACGAATAGTGCACTTATCCTCGATCTGCCTTCTCTC
TTCGAGGGCAACAAAACCCCCCGTGAACCTTCCTAACCCCCTTCTTTGCC
CGTCCTCTTCCTAACCAGGTTGCGCCGCCGCCCCCGGTACGCTGGCGTTC
GCGCCTTCGGCAGGAGGCCCACTTCTGAAACGATCCGCATTCTCTTGGAC
CTCATCCTCTCCTTACTTATCCTGCGATCATGCCAATCGTCGATTGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig73:458904..465752+

>mRNA_F-serratus_M_contig73.18525.1 ID=mRNA_F-serratus_M_contig73.18525.1|Name=mRNA_F-serratus_M_contig73.18525.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig73:458904..465752+ (Fucus serratus male)
ATGGACGGGGCTCCCATCCTACTGCTTGGTTTCTCCAACACCAAGCAGCA
GCTGCATCATCAGGAAGATCAACCAAAGCAGAAGCGTCGTCGTCGATTAT
CCAAAAGCTCTTTGAGATACATCGGTATTTTGGCGGTGGCAACGCTGTCG
ACCAGCGCCTCATATGGACGGGGCTCCCATCCTACTGCTTGGTTTCTCCA
ACACCAAGCAGCAGCTGCATCATCAGGAAGATCAACCAAAGCAGAAGCGT
CGTCGTCGATTATCCAAAAGCTCTTTGAGATACATCGGTATTTTGGCGGT
GGCAACGCTGTCGACCAGCGCCTCATGTTGCGCCGCCGCCCCCGGTACGC
TGGCGTTCGCGCCTTCGGCAGGAGGCCCACTTCTGAAACGATCCGCATTC
TCTTGGACCTCATCCTCTCCTTACTTATCCTGCGATCATGCCAATCGTCG
ATTGCCCGTTGCGCCGCCGCCCCCGGTACGCTGGCGTTCGCGCCTTCGGC
AGGAGGCCCACTTCTGAAACGATCCGCATTCTCTTGGACCTCATCCTCTC
CTTACTTATCCTGCGATCATGCCAATCGTCGATTGCCC
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