mRNA_F-serratus_M_contig7272.18505.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7272.18505.1
Unique NamemRNA_F-serratus_M_contig7272.18505.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: D8LCF8_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.350e-29
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  307 YRIPTKIPEKVRINSEVKDISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQFGQWKKVVKQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            YR+P +I  KV +  EVK++S+K+ERF   K F+GGYRHR TGR+FHHASTQFGQ ++ VK T HLR RDTQTCK+K+TTMQTTNE GTQ
Sbjct:    2 YRMPEEIAVKVLVEGEVKEMSIKLERFEGTKVFQGGYRHRGTGRLFHHASTQFGQRERPVKNTDHLRTRDTQTCKIKTTTMQTTNECGTQ 91          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A836CKY2_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.720e-16
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  283 WPDYCDPAYRIPTKIPEKV-RINSEVKDISVKVERFTEK--KAFEGGYRHRQTGRIFHHASTQFGQWKKVVKQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            +P YCDP YR+PT++  +V R + + + I V VE+  E   K + GGY+ R TG+ FHHASTQFG  K+VVK T +LR+RDTQT ++++   QT  E GTQ
Sbjct:    4 YPTYCDPFYRMPTELAVRVERGDGDAEVIVVMVEKCPEGGCKPYLGGYKARATGKTFHHASTQFGSRKRVVKDTSNLRSRDTQTVQLRTVRAQTRRECGTQ 104          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A7S4DG95_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG95_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 1.370e-14
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  283 WPDYCDPAYRIPTKIPEKVRINS--EVKDISVKVERFTEKKAFEGGYRHRQTGRIFHHAS--TQFGQWKKVVKQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            WP+YC+PAY++P  I  KV I    E + I V +ER   +K + GGYRH++TG +FHHA   T+    KK  K T +L +RDTQT +  +   QT  E GTQ
Sbjct:   31 WPEYCNPAYKMPNLIEVKVVIEETGEERYIPVAIERAEYRKKYLGGYRHKKTGAVFHHAQSQTEISTGKKAPKDTSNLFSRDTQTAQFLTRGQQTKREAGTQ 132          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A7S2CMW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMW8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.120e-9
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  268 PATPEWPDYCDPAYRIPTKIPEKV-RINSEVKDISVKVERFTEK-KAFEGGYRHRQTGRIFHHASTQFGQWKKVVKQTGHLRA-----RDTQTCKVKSTTMQTTNEYGTQ 576
            P  PEWP YCDP Y +P  +   V R N  +    + +E+  EK K + GGYRH+ TG ++HHAS+Q      + K+ G +       RDTQT  +K+ +  T  E+GTQ
Sbjct:   27 PIQPEWPSYCDPDYIMPNSMSVSVKRQNGTIFKFDISIEKTAEKNKPYLGGYRHKGTGFVYHHASSQTPAG--LDKRIGWINPENKTHRDTQTYDMKTRSQMTVREHGTQ 134          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A8J2SZI2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZI2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.960e-9
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  262 PTPATPEWPDYCDPAYRIPTKIPEKV-RINSEVKDISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQFGQWKKVVKQTGHL---------RARDTQTCKVKSTTMQTTNEYGTQ 576
            P   T EWP Y DP+Y++P  I   V + N +   ++V +E+   +K + GGYRH++TGR++HHAS+Q      VV   G L         R RD+QT    S + Q+  EYGTQ
Sbjct:   13 PAAPTEEWPPYADPSYKMPASIEVTVQKRNEDDVTLTVNIEKENTRKPYLGGYRHKKTGRVYHHASSQ-----SVV--LGCLPRYPDPDTRRHRDSQTVVAISRSQQSLREYGTQ 120          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A7S2UXR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXR8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.970e-8
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  271 ATPEWPDYCDPAYRIPTKIPEKVRINS--EVKDISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQ 462
            +T +WP YC+P Y++P+ I  +V I    E + + V V +F  +K + GGYRHR+T +++HHAS Q
Sbjct:   54 STGDWPPYCNPTYKMPSVIEVQVHIEETGETRYLPVFVNKFQGRKRYLGGYRHRETQKVYHHASCQ 119          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A7J7KSB8_BUGNE (IQUB n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KSB8_BUGNE)

HSP 1 Score: 58.2 bits (139), Expect = 1.600e-6
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  307 YRIPTKIPEKVRINSE-VKDISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQFGQWKKVVKQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            Y +P  I  KV    +  KD+ V+VER T KK + GGYRH+QTG  FHHAS Q G   + +        RDTQT ++K    QT+ +  TQ
Sbjct:  366 YVMPDVITVKVETEPQRYKDVVVEVERSTRKKPYLGGYRHKQTGVEFHHASAQTGPKSRAISNVERY-CRDTQTYQMKHIRQQTSEDTYTQ 455          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: K1QE72_CRAGI (IQ and ubiquitin-like domain-containing protein n=5 Tax=Crassostrea gigas TaxID=29159 RepID=K1QE72_CRAGI)

HSP 1 Score: 56.2 bits (134), Expect = 7.140e-6
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  307 YRIPTKIPEKVRIN-SEVKDISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQFGQWKKVVKQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            Y +P  I  +V+ + ++ KD+ V++ER T KK + GGYRH++TG ++HHA+ Q  + +    Q      RDTQT + K    QTTN+  TQ
Sbjct:  271 YHMPDVITVRVQTDENQSKDVVVEIERATRKKPYLGGYRHKKTGVLYHHATAQTVKKQPPPSQIPK-NCRDTQTVQQKHRVQQTTNDTSTQ 360          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: A0A8J1YVP8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1YVP8_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 1.170e-5
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  358 KDISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQFGQWKKVV-KQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            + ISV+VER  E K + GG+RH+ TG IFHH STQ  + +++V K+  H   RDTQT   ++ ++Q+T E GTQ
Sbjct:  139 RQISVQVERQAEIKPYIGGFRHKGTGAIFHHGSTQTAKTEQIVHKEKTH---RDTQTVDQRTRSVQSTRETGTQ 209          
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Match: F0Y8I3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8I3_AURAN)

HSP 1 Score: 55.1 bits (131), Expect = 1.370e-5
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  364 ISVKVERFTEKKAFEGGYRHRQTGRIFHHASTQFGQWKKVV--KQTGHLRARDTQTCKVKSTTMQTTNEYGTQ 576
            ++V V + T +K + GGYRH++TG+++HHAS Q  ++  +   K    LR RDTQT + K+ + Q+  EYGTQ
Sbjct:    1 VTVDVAKCTTRKPYLGGYRHKKTGKVYHHASCQSAEFGLLPQRKNVECLRNRDTQTYETKTRSAQSNREYGTQ 73          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7272.18505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LCF8_ECTSI3.350e-2966.67Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A836CKY2_9STRA3.720e-1649.50Flagellar associated protein n=1 Tax=Tribonema min... [more]
A0A7S4DG95_HETAK1.370e-1445.10Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2CMW8_9STRA3.120e-939.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J2SZI2_9STRA3.960e-939.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UXR8_9STRA3.970e-842.42Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7J7KSB8_BUGNE1.600e-642.86IQUB n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
K1QE72_CRAGI7.140e-639.56IQ and ubiquitin-like domain-containing protein n=... [more]
A0A8J1YVP8_9DINO1.170e-547.30Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
F0Y8I3_AURAN1.370e-542.47Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7272contigF-serratus_M_contig7272:19791..20370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue9.8e-26
Seed eggNOG ortholog2880.D8LCF8
Preferred nameIQUB
Hectar predicted targeting categoryother localisation
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
EggNOG free text desc.smoothened signaling pathway
EggNOG OGs28JBT@1,2QRQT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size580
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932215.3092263-CDS-F-serratus_M_contig7272:19791..203701622932215.3092263-CDS-F-serratus_M_contig7272:19791..20370Fucus serratus maleCDSF-serratus_M_contig7272 19792..20370 -
1690964202.4045832-CDS-F-serratus_M_contig7272:19791..203701690964202.4045832-CDS-F-serratus_M_contig7272:19791..20370Fucus serratus maleCDSF-serratus_M_contig7272 19792..20370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7272.18505.1prot_F-serratus_M_contig7272.18505.1Fucus serratus malepolypeptideF-serratus_M_contig7272 19792..20370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7272.18505.1

>prot_F-serratus_M_contig7272.18505.1 ID=prot_F-serratus_M_contig7272.18505.1|Name=mRNA_F-serratus_M_contig7272.18505.1|organism=Fucus serratus male|type=polypeptide|length=193bp
LGDDTQGARRTAQTTEAKSEEATTRVATALDTNFDDDLARGDVDRDTPEV
YHSHDRAEDKRTGLTTTAENSSRRDEGGGDNPSNDPTPTPATPEWPDYCD
PAYRIPTKIPEKVRINSEVKDISVKVERFTEKKAFEGGYRHRQTGRIFHH
ASTQFGQWKKVVKQTGHLRARDTQTCKVKSTTMQTTNEYGTQA
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mRNA from alignment at F-serratus_M_contig7272:19791..20370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7272.18505.1 ID=mRNA_F-serratus_M_contig7272.18505.1|Name=mRNA_F-serratus_M_contig7272.18505.1|organism=Fucus serratus male|type=mRNA|length=580bp|location=Sequence derived from alignment at F-serratus_M_contig7272:19791..20370- (Fucus serratus male)
CTAGGGGATGATACCCAAGGTGCTCGAAGAACGGCTCAGACCACAGAGGC TAAAAGTGAAGAAGCAACAACCCGAGTGGCAACAGCTTTAGATACAAATT TCGACGATGACCTCGCGAGAGGAGACGTGGACAGGGATACTCCAGAGGTG TACCACAGTCATGATCGAGCAGAAGATAAGCGCACAGGACTCACCACGAC TGCTGAAAACAGCTCCAGAAGAGACGAAGGAGGCGGTGATAACCCATCTA ATGACCCGACACCCACGCCGGCAACGCCAGAGTGGCCCGATTACTGCGAT CCTGCTTACAGGATACCCACCAAGATCCCAGAGAAAGTGCGCATCAACAG CGAGGTGAAGGATATATCTGTTAAGGTAGAACGCTTCACCGAAAAGAAGG CGTTCGAGGGTGGGTATCGGCATCGGCAAACCGGCAGGATTTTTCACCAC GCATCGACTCAATTCGGGCAGTGGAAGAAGGTAGTGAAGCAGACAGGACA TCTCCGTGCCCGAGATACGCAAACATGCAAGGTTAAGTCCACTACCATGC AGACAACAAACGAGTACGGGACCCAGGCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7272:19791..20370-

>mRNA_F-serratus_M_contig7272.18505.1 ID=mRNA_F-serratus_M_contig7272.18505.1|Name=mRNA_F-serratus_M_contig7272.18505.1|organism=Fucus serratus male|type=CDS|length=1158bp|location=Sequence derived from alignment at F-serratus_M_contig7272:19791..20370- (Fucus serratus male)
CTAGGGGATGATACCCAAGGTGCTCGAAGAACGGCTCAGACCACAGAGGC
TAAAAGTGAAGAAGCAACAACCCGAGTGGCAACAGCTTTAGATACAAATT
TCGACGATGACCTCGCGAGAGGAGACGTGGACAGGGATACTCCAGAGGTG
TACCACAGTCATGATCGAGCAGAAGATAAGCGCACAGGACTCACCACGAC
TGCTGAAAACAGCTCCAGAAGAGACGAAGGAGGCGGTGATAACCCATCTA
ATGACCCGACACCCACGCCGGCAACGCCAGAGTGGCCCGATTACTGCGAT
CCTGCTTACAGGATACCCACCAAGATCCCAGAGAAAGTGCGCATCAACAG
CGAGGTGAAGGATATATCTGTTAAGGTAGAACGCTTCACCGAAAAGAAGG
CGTTCGAGGGTGGGTATCGGCATCGGCAAACCGGCAGGATTTTTCACCAC
GCATCGACTCAATTCGGGCAGTGGAAGAAGGTAGTGAAGCAGACAGGACA
TCTCCGTGCCCGAGATACGCAAACATGCAAGGTTAAGTCCACTACCATGC
AGACAACAAACGAGTACGGGACCCAGGCACTAGGGGATGATACCCAAGGT
GCTCGAAGAACGGCTCAGACCACAGAGGCTAAAAGTGAAGAAGCAACAAC
CCGAGTGGCAACAGCTTTAGATACAAATTTCGACGATGACCTCGCGAGAG
GAGACGTGGACAGGGATACTCCAGAGGTGTACCACAGTCATGATCGAGCA
GAAGATAAGCGCACAGGACTCACCACGACTGCTGAAAACAGCTCCAGAAG
AGACGAAGGAGGCGGTGATAACCCATCTAATGACCCGACACCCACGCCGG
CAACGCCAGAGTGGCCCGATTACTGCGATCCTGCTTACAGGATACCCACC
AAGATCCCAGAGAAAGTGCGCATCAACAGCGAGGTGAAGGATATATCTGT
TAAGGTAGAACGCTTCACCGAAAAGAAGGCGTTCGAGGGTGGGTATCGGC
ATCGGCAAACCGGCAGGATTTTTCACCACGCATCGACTCAATTCGGGCAG
TGGAAGAAGGTAGTGAAGCAGACAGGACATCTCCGTGCCCGAGATACGCA
AACATGCAAGGTTAAGTCCACTACCATGCAGACAACAAACGAGTACGGGA
CCCAGGCA
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