mRNA_F-serratus_M_contig7261.18499.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7261.18499.1
Unique NamemRNA_F-serratus_M_contig7261.18499.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7261.18499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7261contigF-serratus_M_contig7261:17625..18449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size190
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932214.632694-CDS-F-serratus_M_contig7261:17625..177351622932214.632694-CDS-F-serratus_M_contig7261:17625..17735Fucus serratus maleCDSF-serratus_M_contig7261 17626..17735 -
1690964202.154234-CDS-F-serratus_M_contig7261:17625..177351690964202.154234-CDS-F-serratus_M_contig7261:17625..17735Fucus serratus maleCDSF-serratus_M_contig7261 17626..17735 -
1622932214.6515548-CDS-F-serratus_M_contig7261:18370..184491622932214.6515548-CDS-F-serratus_M_contig7261:18370..18449Fucus serratus maleCDSF-serratus_M_contig7261 18371..18449 -
1690964202.1741245-CDS-F-serratus_M_contig7261:18370..184491690964202.1741245-CDS-F-serratus_M_contig7261:18370..18449Fucus serratus maleCDSF-serratus_M_contig7261 18371..18449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7261.18499.1prot_F-serratus_M_contig7261.18499.1Fucus serratus malepolypeptideF-serratus_M_contig7261 17626..18449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7261.18499.1

>prot_F-serratus_M_contig7261.18499.1 ID=prot_F-serratus_M_contig7261.18499.1|Name=mRNA_F-serratus_M_contig7261.18499.1|organism=Fucus serratus male|type=polypeptide|length=63bp
KEGDKSPWVWPESFIEFIVHLPLHLQGDHTFCSSDCAGAEKHIIVEEDCE
GGILPSANAAGRV
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mRNA from alignment at F-serratus_M_contig7261:17625..18449-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7261.18499.1 ID=mRNA_F-serratus_M_contig7261.18499.1|Name=mRNA_F-serratus_M_contig7261.18499.1|organism=Fucus serratus male|type=mRNA|length=825bp|location=Sequence derived from alignment at F-serratus_M_contig7261:17625..18449- (Fucus serratus male)
AAGGAGGGAGATAAATCGCCATGGGTTTGGCCCGAGTCTTTCATCGAATT
TATCGTTCACCTCCCATTGCATCTACAAGGTAAAAATGATACTTTTTCAT
TATGCGTTTCGCTTTTTCCTTGTCGCGTGCAAAAAGTAGCCAAGCGCACA
AAAACAAATAGCTCACAAATGGATGAATGGTGTGGTTGCCTCCTGTGCAC
ACGTTATCACCACGGTTCCTGGTCGTTGGGTGTTACTATAGTCAGACTTG
TTTGGAACCGTGAGCGTTCTATAGTTGTGTGCGTGCACACGTACGCCTAC
ACTATATGAGTGGTTCATCCAATGGGGGGGACGGGGATGTCGAAAATGTT
TACTCGTTTTGGTAGGGAACGGCGCGATAAATAGACCCGGCTACATATAT
GCCCAACTCCTTGCGGAAATGAATTGTATTCGGGGCAAGCTTGCCGACCA
TGAATACCTGGAAGGTGGGACGTCTTGGTGACCACCCCGGGGACGGAATC
GACGTACCCCCGCCCCCCTCAATCGTTGAACGAATCATATACAGTACTCT
GGGGGCCGGGCGCATGGGAACTGAGTTTTTGGGTCGACGATTTCAGGCCG
TCAAAATGCCCCATATCACGTGCTCCGTATCATTGGGCAACTGTAAAGTG
AGAGTCTGTAATACCTTGCAAAACGTACACCGCCTGCCCCTTTTCTTGCG
CGATCTCCTGACAGGAGACCACACGTTCTGCTCTTCCGATTGTGCAGGTG
CTGAAAAGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGCCG
TCCGCCAACGCTGCCGGAAGGGTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7261:17625..18449-

>mRNA_F-serratus_M_contig7261.18499.1 ID=mRNA_F-serratus_M_contig7261.18499.1|Name=mRNA_F-serratus_M_contig7261.18499.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig7261:17625..18449- (Fucus serratus male)
AAGGAGGGAGATAAATCGCCATGGGTTTGGCCCGAGTCTTTCATCGAATT
TATCGTTCACCTCCCATTGCATCTACAAGAAGGAGGGAGATAAATCGCCA
TGGGTTTGGCCCGAGTCTTTCATCGAATTTATCGTTCACCTCCCATTGCA
TCTACAAGGAGACCACACGTTCTGCTCTTCCGATTGTGCAGGTGCTGAAA
AGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCTGCCGTCCGCC
AACGCTGCCGGAAGGGTCGAGACCACACGTTCTGCTCTTCCGATTGTGCA
GGTGCTGAAAAGCATATCATCGTTGAAGAAGATTGCGAGGGCGGGATTCT
GCCGTCCGCCAACGCTGCCGGAAGGGTC
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