mRNA_F-serratus_M_contig7261.18498.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7261.18498.1
Unique NamemRNA_F-serratus_M_contig7261.18498.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7261.18498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7261contigF-serratus_M_contig7261:15629..15805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size141
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7261.18498.1prot_F-serratus_M_contig7261.18498.1Fucus serratus malepolypeptideF-serratus_M_contig7261 15629..15789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932214.560104-CDS-F-serratus_M_contig7261:15628..156981622932214.560104-CDS-F-serratus_M_contig7261:15628..15698Fucus serratus maleCDSF-serratus_M_contig7261 15629..15698 -
1690964202.106716-CDS-F-serratus_M_contig7261:15628..156981690964202.106716-CDS-F-serratus_M_contig7261:15628..15698Fucus serratus maleCDSF-serratus_M_contig7261 15629..15698 -
1622932214.577473-CDS-F-serratus_M_contig7261:15718..157891622932214.577473-CDS-F-serratus_M_contig7261:15718..15789Fucus serratus maleCDSF-serratus_M_contig7261 15719..15789 -
1690964202.1271513-CDS-F-serratus_M_contig7261:15718..157891690964202.1271513-CDS-F-serratus_M_contig7261:15718..15789Fucus serratus maleCDSF-serratus_M_contig7261 15719..15789 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932214.5910115-UTR-F-serratus_M_contig7261:15789..158051622932214.5910115-UTR-F-serratus_M_contig7261:15789..15805Fucus serratus maleUTRF-serratus_M_contig7261 15790..15805 -
1690964202.1399195-UTR-F-serratus_M_contig7261:15789..158051690964202.1399195-UTR-F-serratus_M_contig7261:15789..15805Fucus serratus maleUTRF-serratus_M_contig7261 15790..15805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7261.18498.1

>prot_F-serratus_M_contig7261.18498.1 ID=prot_F-serratus_M_contig7261.18498.1|Name=mRNA_F-serratus_M_contig7261.18498.1|organism=Fucus serratus male|type=polypeptide|length=47bp
MPLRSKRQVLPSFSFPGKTPEHPTTWQSPGEVSCYDASGSKHKRAEK
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mRNA from alignment at F-serratus_M_contig7261:15629..15805-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7261.18498.1 ID=mRNA_F-serratus_M_contig7261.18498.1|Name=mRNA_F-serratus_M_contig7261.18498.1|organism=Fucus serratus male|type=mRNA|length=177bp|location=Sequence derived from alignment at F-serratus_M_contig7261:15629..15805- (Fucus serratus male)
CAAAACAGGAAAGACAATGCCGCTGCGCTCAAAACGGCAAGTGCTGCCCA
GCTTTTCTTTCCCGGGAAAGACTCCGGAGCATCCAACGCGAGTGGTGCTG
TCGGGAGCACATGGCAATCACCCGGTGAGGTGTCCTGTTACGACGCAAGC
GGCAGCAAGCACAAGAGGGCGGAGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7261:15629..15805-

>mRNA_F-serratus_M_contig7261.18498.1 ID=mRNA_F-serratus_M_contig7261.18498.1|Name=mRNA_F-serratus_M_contig7261.18498.1|organism=Fucus serratus male|type=CDS|length=282bp|location=Sequence derived from alignment at F-serratus_M_contig7261:15629..15805- (Fucus serratus male)
ATGCCGCTGCGCTCAAAACGGCAAGTGCTGCCCAGCTTTTCTTTCCCGGG
AAAGACTCCGGAGCATCCAACATGCCGCTGCGCTCAAAACGGCAAGTGCT
GCCCAGCTTTTCTTTCCCGGGAAAGACTCCGGAGCATCCAACCACATGGC
AATCACCCGGTGAGGTGTCCTGTTACGACGCAAGCGGCAGCAAGCACAAG
AGGGCGGAGAAGCACATGGCAATCACCCGGTGAGGTGTCCTGTTACGACG
CAAGCGGCAGCAAGCACAAGAGGGCGGAGAAG
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