mRNA_F-serratus_M_contig7251.18486.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7251.18486.1
Unique NamemRNA_F-serratus_M_contig7251.18486.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.620e-41
Identity = 69/133 (51.88%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
            LWHRR+GH++ +SLD+L+KV  NGV + G +  CDVCAVG S+Q+ HPK A     R FQLV TDLMG F+P ALGG+ Y+ K  D+H +W  V+L+K K   +   Q F QS++ P  +R+E +RADKGGE+
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEY 400          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.080e-37
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
            LWHRRMGH+N KSLD+L++  ++G+ + G V DC  C +GKS Q+ HPK A   V   FQLVF D +G FTP ALGG+KY +K  D+HT+W  V L+K K  ++   + F +  VIP   R+  LRADKG EF
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEF 707          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.100e-37
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
            LWHRRMGH+N KSLD+L++  ++G+ + G V DC  C +GKS Q+ HPK A   V   FQLVF D +G FTP ALGG+KY +K  D+HT+W  V L+K K  ++   + F +  VIP   R+  LRADKG EF
Sbjct:  697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEF 829          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.100e-37
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
            LWHRRMGH+N KSLD+L++  ++G+ + G V DC  C +GKS Q+ HPK A   V   FQLVF D +G FTP ALGG+KY +K  D+HT+W  V L+K K  ++   + F +  VIP   R+  LRADKG EF
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEF 707          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.460e-37
Identity = 67/138 (48.55%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
            LWHRRMGH+N KSLD+L+K  +NGV     V DC  CA+GKS Q+ HPK A   V+R FQLVF D +G FTP ALGG+KY +K  D+ T+W  + L+K K  ++ +   F +  V+P+G  +  LR D G EF   +F
Sbjct:  528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEF 665          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.920e-35
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
            LWHRRMGH+N KSLD+L+K   NGV + G V DC VC +GKS Q+ HPK     V R FQ V  D +G FTP ALGG+KY +K  D+ T+W  + L+K +  ++ +   F +  V+P+G R+  LR D G EF   +F
Sbjct:  288 LWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEF 425          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.180e-33
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDG-ALHTFQSFVQSMVIPSGVRVERLRADKGGEF 399
            LWHRRMGH+N KSLD+L++  ++G+ + G V DC  C +GKS Q+ HPK A   V   FQLVF D  G FT   LGG+KY +K  D+HT+W  V L+K K   ++   + F +  VIP   R+  LRA KG EF
Sbjct:  480 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEF 613          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 2.230e-31
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    1 LWHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
            LWHRRMGH+N K+LD+L+K   NGV + G V  C VC +GKS Q+ HPK A   V R FQ    D +G F P ALGG KY +K  D+ T+W  + L+K +  ++ +   F +  V+P+G R+  LR D+G EF   +F
Sbjct:   48 LWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEF 182          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 9.230e-30
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    4 WHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
            WHR + HLN +S++LL+K   NGV F  ++  CD+CA+ KSRQ AHP+  ++      QLV+TD MG+ TP A GG+ YVSK +D ++    +YLLK+    +    ++   +  P G R+E +R + GGE + N+F
Sbjct:  311 WHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEF 447          
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.040e-28
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query:    4 WHRRMGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHVQRSFQLVFTDLMGQFTPEAL---GGYKYVSKISDEHTRWTGVYLLKSKDGALHTFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF 414
            WHRR+GHLN +SLD+L+K    GV +  ++  C VC + K +Q  HPK + + + R  QLV  D MG   P A    G + Y  KI+D++T+   VYLL+ K        ++   +    G R+E +R DKGGE  G++F
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEF 184          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7251.18486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.620e-4151.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN3_9PHAE1.080e-3750.38Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.100e-3750.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.100e-3750.38Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JBV6_9PHAE9.460e-3748.55Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE6.920e-3547.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE1.180e-3347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE2.230e-3144.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE9.230e-3040.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ34_9PHAE1.040e-2838.57Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7251contigF-serratus_M_contig7251:14674..15087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.0
Seed ortholog evalue6e-14
Seed eggNOG ortholog4530.OS08T0125300-01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.7154672-UTR-F-serratus_M_contig7251:14673..146881622932212.7154672-UTR-F-serratus_M_contig7251:14673..14688Fucus serratus maleUTRF-serratus_M_contig7251 14674..14688 +
1690964201.2261217-UTR-F-serratus_M_contig7251:14673..146881690964201.2261217-UTR-F-serratus_M_contig7251:14673..14688Fucus serratus maleUTRF-serratus_M_contig7251 14674..14688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932212.7283013-CDS-F-serratus_M_contig7251:14688..150871622932212.7283013-CDS-F-serratus_M_contig7251:14688..15087Fucus serratus maleCDSF-serratus_M_contig7251 14689..15087 +
1690964201.2497964-CDS-F-serratus_M_contig7251:14688..150871690964201.2497964-CDS-F-serratus_M_contig7251:14688..15087Fucus serratus maleCDSF-serratus_M_contig7251 14689..15087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7251.18486.1prot_F-serratus_M_contig7251.18486.1Fucus serratus malepolypeptideF-serratus_M_contig7251 14689..15087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7251.18486.1

>prot_F-serratus_M_contig7251.18486.1 ID=prot_F-serratus_M_contig7251.18486.1|Name=mRNA_F-serratus_M_contig7251.18486.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MGHLNRKSLDLLKKVNSNGVSFEGTVPDCDVCAVGKSRQRAHPKTADQHV
QRSFQLVFTDLMGQFTPEALGGYKYVSKISDEHTRWTGVYLLKSKDGALH
TFQSFVQSMVIPSGVRVERLRADKGGEFIGNDF
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mRNA from alignment at F-serratus_M_contig7251:14674..15087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7251.18486.1 ID=mRNA_F-serratus_M_contig7251.18486.1|Name=mRNA_F-serratus_M_contig7251.18486.1|organism=Fucus serratus male|type=mRNA|length=414bp|location=Sequence derived from alignment at F-serratus_M_contig7251:14674..15087+ (Fucus serratus male)
CTCTGGCATCGGCGGATGGGACACCTCAACCGGAAGAGTCTGGACCTCTT AAAGAAGGTGAATAGCAACGGAGTGAGTTTCGAAGGAACCGTGCCAGACT GTGACGTTTGCGCCGTGGGGAAAAGCCGTCAACGGGCCCACCCCAAGACA GCCGACCAACACGTTCAGCGCTCTTTCCAGCTGGTCTTCACAGATCTAAT GGGACAATTCACGCCTGAGGCGCTCGGTGGCTACAAGTATGTTTCCAAAA TCTCCGACGAGCACACCAGGTGGACTGGGGTATACCTTCTTAAGAGCAAG GATGGCGCCCTCCACACATTCCAGTCGTTCGTACAGTCGATGGTGATTCC TAGTGGGGTTCGCGTCGAGCGGTTGAGAGCGGACAAAGGAGGCGAGTTCA TCGGCAACGACTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7251:14674..15087+

>mRNA_F-serratus_M_contig7251.18486.1 ID=mRNA_F-serratus_M_contig7251.18486.1|Name=mRNA_F-serratus_M_contig7251.18486.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig7251:14674..15087+ (Fucus serratus male)
ATGGGACACCTCAACCGGAAGAGTCTGGACCTCTTAAAGAAGGTGAATAG
CAACGGAGTGAGTTTCGAAGGAACCGTGCCAGACTGTGACGTTTGCGCCG
TGGGGAAAAGCCGTCAACGGGCCCACCCCAAGACAGCCGACCAACACGTT
CAGCGCTCTTTCCAGCTGGTCTTCACAGATCTAATGGGACAATTCACGCC
TGAGGCGCTCGGTGGCTACAAGTATGTTTCCAAAATCTCCGACGAGCACA
CCAGGTGGACTGGGGTATACCTTCTTAAGAGCAAGGATGGCGCCCTCCAC
ACATTCCAGTCGTTCGTACAGTCGATGGTGATTCCTAGTGGGGTTCGCGT
CGAGCGGTTGAGAGCGGACAAAGGAGGCGAGTTCATCGGCAACGACTTCA
TGGGACACCTCAACCGGAAGAGTCTGGACCTCTTAAAGAAGGTGAATAGC
AACGGAGTGAGTTTCGAAGGAACCGTGCCAGACTGTGACGTTTGCGCCGT
GGGGAAAAGCCGTCAACGGGCCCACCCCAAGACAGCCGACCAACACGTTC
AGCGCTCTTTCCAGCTGGTCTTCACAGATCTAATGGGACAATTCACGCCT
GAGGCGCTCGGTGGCTACAAGTATGTTTCCAAAATCTCCGACGAGCACAC
CAGGTGGACTGGGGTATACCTTCTTAAGAGCAAGGATGGCGCCCTCCACA
CATTCCAGTCGTTCGTACAGTCGATGGTGATTCCTAGTGGGGTTCGCGTC
GAGCGGTTGAGAGCGGACAAAGGAGGCGAGTTCATCGGCAACGACTTC
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