mRNA_F-serratus_M_contig7221.18471.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7221.18471.1
Unique NamemRNA_F-serratus_M_contig7221.18471.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7221.18471.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.390e-31
Identity = 96/306 (31.37%), Postives = 152/306 (49.67%), Query Frame = 1 
Query:    1 LASVLKDSRVGTFTLPLSCFVHTTSGRLLRRAGIDDLYADIKQKGWLTTSLPTVCLVGDVP-EGGL-TAENADSRQYRMIDGNHRLAAIRLLKKEPDSCAPAAIDVDVHAGISRDTEKHIALNLNTSTELLVKTTLFDRIAWHKSWYDSMQ----------------------ASRKSKAPLSASTISSRFYA*AVEALKPRGYAALEDVTRLEGRPDGHPDLKECRLQYKRVTRKSLLRPEFINLTGIEQEAYVYRLASGILPGI--MTDDDFKKLDDMAKQVGRMMSSAEAAFPVVEWTDSFSQ 840
            ++ +L    +G+  + +     T+ GR  R+AGI  L   I+  G+  +  P VCLV  +P E  L T   A   + R+IDGNHR+AA++ + +E    +P  I V VH  + + TE+ +A   N  +  +VKT L D + W++S   ++Q                      A++  KAP  A+    ++   A+  + P G  AL D++ L GR   HPDL    L YKRVT K + R +F  +   +QEAYVYRLA G +     + D+  K LD  A+ + + +   E+  P  EW++ F +
Sbjct:   15 ISKLLAKFYLGSHRVSIRGLELTSIGRAQRQAGIVALKKHIESDGFDESYAPIVCLVNPLPQEQSLGTVLAAGDIKLRVIDGNHRVAALQQIDEETKPTSPRVISVRVHQPMPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFANQSQKAP--ANQTLKKWIGIALN-ITPYGLEALRDLSYLPGREPNHPDLTS--LDYKRVTLKLVERTKFQGMNKWQQEAYVYRLAKGAITTNKQLNDEQCKTLDSTAETIAQEIERVESIIPRAEWSEGFKR 315
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7221.18471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE2.390e-3131.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7221contigF-serratus_M_contig7221:18450..20614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size840
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7221.18471.1prot_F-serratus_M_contig7221.18471.1Fucus serratus malepolypeptideF-serratus_M_contig7221 19030..20386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932210.13058-UTR-F-serratus_M_contig7221:18449..185821622932210.13058-UTR-F-serratus_M_contig7221:18449..18582Fucus serratus maleUTRF-serratus_M_contig7221 18450..18582 -
1690964199.9289618-UTR-F-serratus_M_contig7221:18449..185821690964199.9289618-UTR-F-serratus_M_contig7221:18449..18582Fucus serratus maleUTRF-serratus_M_contig7221 18450..18582 -
1622932210.1510608-UTR-F-serratus_M_contig7221:18832..190291622932210.1510608-UTR-F-serratus_M_contig7221:18832..19029Fucus serratus maleUTRF-serratus_M_contig7221 18833..19029 -
1690964199.9407825-UTR-F-serratus_M_contig7221:18832..190291690964199.9407825-UTR-F-serratus_M_contig7221:18832..19029Fucus serratus maleUTRF-serratus_M_contig7221 18833..19029 -
1622932210.2364738-UTR-F-serratus_M_contig7221:20386..206141622932210.2364738-UTR-F-serratus_M_contig7221:20386..20614Fucus serratus maleUTRF-serratus_M_contig7221 20387..20614 -
1690964199.9861665-UTR-F-serratus_M_contig7221:20386..206141690964199.9861665-UTR-F-serratus_M_contig7221:20386..20614Fucus serratus maleUTRF-serratus_M_contig7221 20387..20614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932210.1708312-CDS-F-serratus_M_contig7221:19029..190301622932210.1708312-CDS-F-serratus_M_contig7221:19029..19030Fucus serratus maleCDSF-serratus_M_contig7221 19030..19030 -
1690964199.952435-CDS-F-serratus_M_contig7221:19029..190301690964199.952435-CDS-F-serratus_M_contig7221:19029..19030Fucus serratus maleCDSF-serratus_M_contig7221 19030..19030 -
1622932210.1987193-CDS-F-serratus_M_contig7221:19481..196291622932210.1987193-CDS-F-serratus_M_contig7221:19481..19629Fucus serratus maleCDSF-serratus_M_contig7221 19482..19629 -
1690964199.9668431-CDS-F-serratus_M_contig7221:19481..196291690964199.9668431-CDS-F-serratus_M_contig7221:19481..19629Fucus serratus maleCDSF-serratus_M_contig7221 19482..19629 -
1622932210.2189798-CDS-F-serratus_M_contig7221:20253..203861622932210.2189798-CDS-F-serratus_M_contig7221:20253..20386Fucus serratus maleCDSF-serratus_M_contig7221 20254..20386 -
1690964199.9769611-CDS-F-serratus_M_contig7221:20253..203861690964199.9769611-CDS-F-serratus_M_contig7221:20253..20386Fucus serratus maleCDSF-serratus_M_contig7221 20254..20386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7221.18471.1

>prot_F-serratus_M_contig7221.18471.1 ID=prot_F-serratus_M_contig7221.18471.1|Name=mRNA_F-serratus_M_contig7221.18471.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MIDGNHRLAAIRLLKKEPDSCAPAAIDVDVHAGISRDTEKHIALNLNTST
ELLVKTTLFDRIAWHKSWYDSMQASRKSKAPLSASTISSRFYA*
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mRNA from alignment at F-serratus_M_contig7221:18450..20614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7221.18471.1 ID=mRNA_F-serratus_M_contig7221.18471.1|Name=mRNA_F-serratus_M_contig7221.18471.1|organism=Fucus serratus male|type=mRNA|length=2165bp|location=Sequence derived from alignment at F-serratus_M_contig7221:18450..20614- (Fucus serratus male)
TTAGCGTCTGTACTCAAGGATTCTCGTGTGGGAACCTTTACTCTGCCATT
ATCTTGCTTCGTTCACACGACGAGCGGGCGCCTCCTTCGTAGAGCAGGTA
TCGATGACCTGTACGCAGACATCAAACAGAAAGGCTGGCTTACGACGAGT
CTTCCTACGGTATGCCTCGTTGGTGATGTTCCCGAGGGGGGGCTGACGGC
AGAGAACGCTGACTCGCGCCAGTATCGCATGATTGACGGCAATCATCGAC
TCGCCGCTATTCGCTTGCTCAAGAAGGAGCCCGATTCATGCGCCCCCGCG
GCGATCGATGTCGATGTCCATGCTGGGATATCCAGAGATACGGAGAAACA
CATCGCACTGAGTGAGCCTGTTGTTGTTATGTCTCGCGTTTCGTTGATTT
ACGTATAATATGGGTAGCTTGCACGAGTATGTGTAGATGTGTTCGTGGGG
ATATGACGTGCTGCGCTTCACAGCAGTGTGATGCTGCGATCGAGGTACAA
TCAGCGTATTGGTTGCCAACCCGAAAAAAACTACCGAAGTACTTGACGCG
CAGGCCAAACCCGCGTGCGCTGCGCGTGCGGAGAAAAACAAAAACAAATC
ACGCGACGCATCTAAATGCCTCGCCGCTGCGTAGGTCTCGGTCCGTCTCA
TCAATCAACATGATATTTGACGCAGCTCTTCTGTAGTTTAGGTGTTCCCA
CGCCCTTTGTATACGAATGTATGCGCTGCTGCTGTGTACTGTCTGGTTGT
GTGCGTTTGTGCGTTATGTTTGTGCTGTGGGTCGTGGTGTTTTTGTTTTG
TTTTTGTTTTGTGTCGTTAAAAATAAATTCTATACAGATCTTGATTCCTT
GTAGATGCCTGTGCATGGTGCATGCTCGCTGCCGGGCTAGACGTTGCGAC
GAAGGTGCTATAAAACTTAGCACATATATATATGTTCCCACACACCCTGG
CGATTGTACGATACGAACCCATTGTTGTATCTCAGATCTGAACACCTCTA
CAGAGCTTCTGGTGAAGACGACGTTATTCGACAGGATCGCTTGGCACAAA
TCTTGGTACGATTCAATGCAGGCATCACGGAAGTCGAAAGCCCCGTTGTC
TGCGAGTACAATCTCCTCCCGTTTTTACGCCTAGTCAAAGAAGGTATGTA
ATACTCCACTCGAACATCCACCTTGTAGTATGTACAAGTGCGTCATGTGG
AAGTAGTATGTTTTGGCTGCCATATCTCTACAGTGAATTCGTGTATGTAC
GAATATTTTCAACAGCAGTTGCTACCTGTTTGGTATAATGTTGATAGCAC
GTATCAGTATTATACAGTATTTGTTGTCTTGCTATTTCATACGTAAACAG
GCACGACGAACTCCAAAATTATTTTTTCAGGCAAGGATGTTAACGGCTAG
AGTTTGTGGTATTTTAACTGCAATGATGTCAAAGTCTAACCATGGCAACG
TGCTGGCCGTGTCGCTTCTGTCTCTGCCCGTTTTCTCGCCGCTCGTTCGC
CTCGCCGCCGCCCCCCCCGCCCCCCCGTTCTTGTCAGGACCGTGTTGCCT
GCCAATCCCTTCCCATGATAAAGGAGTGTATGAGAGCTGTAGAAGCGCTC
AAGCCACGAGGATACGCTGCCCTGGAGGATGTTACCCGCTTGGAGGGCCG
CCCGGATGGGCATCCCGATCTAAAGGAATGCCGCCTGCAGTACAAGCGGG
TGACTCGCAAGTCGTTGCTCCGCCCTGAATTCATCAACCTCACGGGCATA
GAACAAGAGGCGTACGTGTATCGATTGGCGAGGTGAGATGAAAGACTAGT
GGTGCCAGGTGCACGTGATATTCATACAAAAGCGTATCTTGGTAAGAAAT
GTCTATTATACAGCTTGACATCCTTTTAAATATCTTCATGAACACAATAT
AGGATGGCTTATTGCCAACACAGTAAAAGTTCTGAATCACAGGCTTAGTT
GGCACAGACAAAGTTGTTTCGATCCATTCCTTCTCTTACTGATGCTTGCT
TGCCTTGTCACCCCGGTAGGTAATATGCATAGCGGTATTCTCCCTGGAAT
CATGACTGATGACGACTTCAAGAAGCTCGACGACATGGCCAAGCAGGTCG
GCCGCATGATGTCTTCCGCCGAAGCGGCATTCCCTGTGGTCGAGTGGACC
GACTCTTTCAGCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig7221:18450..20614-

>mRNA_F-serratus_M_contig7221.18471.1 ID=mRNA_F-serratus_M_contig7221.18471.1|Name=mRNA_F-serratus_M_contig7221.18471.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig7221:18450..20614- (Fucus serratus male)
ATGATTGACGGCAATCATCGACTCGCCGCTATTCGCTTGCTCAAGAAGGA
GCCCGATTCATGCGCCCCCGCGGCGATCGATGTCGATGTCCATGCTGGGA
TATCCAGAGATACGGAGAAACACATCGCACTGAATGATTGACGGCAATCA
TCGACTCGCCGCTATTCGCTTGCTCAAGAAGGAGCCCGATTCATGCGCCC
CCGCGGCGATCGATGTCGATGTCCATGCTGGGATATCCAGAGATACGGAG
AAACACATCGCACTGAATCTGAACACCTCTACAGAGCTTCTGGTGAAGAC
GACGTTATTCGACAGGATCGCTTGGCACAAATCTTGGTACGATTCAATGC
AGGCATCACGGAAGTCGAAAGCCCCGTTGTCTGCGAGTACAATCTCCTCC
CGTTTTTACGCCTAATCTGAACACCTCTACAGAGCTTCTGGTGAAGACGA
CGTTATTCGACAGGATCGCTTGGCACAAATCTTGGTACGATTCAATGCAG
GCATCACGGAAGTCGAAAGCCCCGTTGTCTGCGAGTACAATCTCCTCCCG
TTTTTACGCCTAAA
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